Wall clock time and date at job start Tue Mar 31 2020 11:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86810 * 119.99718 * 2 1 4 4 H 1.48499 * 109.47021 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46901 * 300.00178 * 3 2 1 6 6 H 1.48496 * 109.47027 * 60.00161 * 3 2 1 7 7 C 1.37878 * 120.00619 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00409 * 184.94244 * 7 2 1 9 9 C 1.50706 * 119.99539 * 4.94142 * 7 2 1 10 10 H 1.08997 * 109.46878 * 329.58841 * 9 7 2 11 11 C 1.52992 * 109.46946 * 209.58159 * 9 7 2 12 12 C 1.50708 * 109.47026 * 65.00293 * 11 9 7 13 13 O 1.21276 * 119.99885 * 359.97438 * 12 11 9 14 14 N 1.34773 * 119.99658 * 179.71950 * 12 11 9 15 15 C 1.46501 * 119.99791 * 180.27672 * 14 12 11 16 16 C 1.53000 * 109.47199 * 180.02562 * 15 14 12 17 17 C 1.53003 * 109.47098 * 179.97438 * 16 15 14 18 18 C 1.53784 * 113.61190 * 274.13706 * 17 16 15 19 19 C 1.53956 * 87.01650 * 220.04546 * 18 17 16 20 20 O 1.42909 * 113.73926 * 139.94726 * 19 18 17 21 21 C 1.53777 * 113.61311 * 176.53170 * 17 16 15 22 22 C 1.50700 * 109.46726 * 89.58502 * 9 7 2 23 23 C 1.38233 * 120.00312 * 56.76701 * 22 9 7 24 24 C 1.38238 * 120.00068 * 179.80622 * 23 22 9 25 25 C 1.38236 * 119.99843 * 0.40255 * 24 23 22 26 26 C 1.38232 * 119.99848 * 359.85381 * 25 24 23 27 27 C 1.38231 * 120.00503 * 359.95420 * 26 25 24 28 28 H 0.96999 * 120.00139 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47694 * 305.00126 * 11 9 7 30 30 H 1.09002 * 109.47172 * 184.99827 * 11 9 7 31 31 H 0.96997 * 120.00578 * 0.27904 * 14 12 11 32 32 H 1.09001 * 109.47483 * 300.00401 * 15 14 12 33 33 H 1.09000 * 109.47282 * 60.00343 * 15 14 12 34 34 H 1.08994 * 109.47332 * 299.99829 * 16 15 14 35 35 H 1.09001 * 109.47244 * 60.00276 * 16 15 14 36 36 H 1.08996 * 112.85217 * 45.33037 * 17 16 15 37 37 H 1.08999 * 113.61826 * 334.56431 * 18 17 16 38 38 H 1.09005 * 113.61324 * 105.47065 * 18 17 16 39 39 H 1.08990 * 113.54302 * 270.80885 * 19 18 17 40 40 H 0.96686 * 114.00231 * 82.40167 * 20 19 18 41 41 H 1.08997 * 113.61361 * 254.52659 * 21 17 16 42 42 H 1.09004 * 113.61821 * 25.43445 * 21 17 16 43 43 H 1.08002 * 119.99807 * 359.97438 * 23 22 9 44 44 H 1.07998 * 119.99579 * 180.22920 * 24 23 22 45 45 H 1.07997 * 119.99442 * 179.83352 * 25 24 23 46 46 H 1.08004 * 119.99448 * 179.97438 * 26 25 24 47 47 H 1.07998 * 120.00260 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0816 -1.1956 0.0811 9 6 1.2553 -2.4968 -0.1113 10 1 0.2698 -2.3891 0.3416 11 6 2.0330 -3.5963 0.6146 12 6 2.0798 -3.2886 2.0892 13 8 1.5443 -2.2882 2.5172 14 7 2.7124 -4.1279 2.9329 15 6 2.7527 -3.8320 4.3671 16 6 3.5262 -4.9341 5.0937 17 6 3.5688 -4.6247 6.5916 18 6 4.7268 -3.6972 6.9962 19 6 4.8947 -4.5840 8.2435 20 8 6.2579 -4.8307 8.5946 21 6 4.2538 -5.7188 7.4273 22 6 1.1027 -2.8652 -1.5646 23 6 2.2213 -2.9906 -2.3671 24 6 2.0815 -3.3325 -3.6992 25 6 0.8225 -3.5409 -4.2308 26 6 -0.2963 -3.4103 -3.4296 27 6 -0.1563 -3.0723 -2.0966 28 1 -0.4850 0.8400 0.0004 29 1 3.0483 -3.6437 0.2210 30 1 1.5379 -4.5548 0.4590 31 1 3.1410 -4.9279 2.5906 32 1 3.2488 -2.8746 4.5268 33 1 1.7359 -3.7838 4.7569 34 1 3.0304 -5.8916 4.9342 35 1 4.5430 -4.9819 4.7040 36 1 2.6019 -4.3140 6.9873 37 1 5.5765 -3.7368 6.3147 38 1 4.4116 -2.6786 7.2228 39 1 4.2911 -4.2613 9.0916 40 1 6.6665 -4.1206 9.1080 41 1 3.5573 -6.3299 8.0014 42 1 4.9740 -6.3121 6.8639 43 1 3.2046 -2.8241 -1.9526 44 1 2.9556 -3.4341 -4.3251 45 1 0.7132 -3.8053 -5.2722 46 1 -1.2799 -3.5727 -3.8451 47 1 -1.0305 -2.9707 -1.4705 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357154427.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:50 Heat of formation + Delta-G solvation = -57.608111 kcal Electronic energy + Delta-G solvation = -25760.671189 eV Core-core repulsion = 22101.253394 eV Total energy + Delta-G solvation = -3659.417795 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.75598 -38.94483 -38.13260 -35.86084 -34.43460 -33.76112 -31.47157 -30.50291 -29.98877 -28.63807 -26.03138 -25.75227 -24.29257 -22.64063 -21.67689 -21.52211 -20.23069 -19.69623 -19.11852 -17.71774 -16.60342 -16.21299 -15.94092 -15.65608 -15.31735 -15.08216 -14.60828 -14.42288 -14.18125 -13.95726 -13.81954 -13.23169 -12.96805 -12.69095 -12.55671 -12.41252 -12.21604 -11.98265 -11.91958 -11.77130 -11.58429 -11.37208 -11.10922 -10.89733 -10.87193 -10.65366 -10.52282 -10.42339 -10.24368 -10.03853 -9.98888 -9.40191 -9.07601 -8.77214 -8.48925 -8.29040 -8.02946 -7.59897 -5.89669 -3.88596 2.30441 2.36139 3.38440 3.45427 3.47778 3.62613 3.69785 3.98279 4.26000 4.35099 4.52911 4.54166 4.62869 4.76779 4.98602 5.19045 5.27788 5.41133 5.44172 5.49730 5.53155 5.62597 5.67503 5.70832 5.74744 5.78262 5.86277 5.90338 6.06389 6.13567 6.18563 6.24065 6.25942 6.32410 6.43017 6.56383 6.83228 6.93481 7.00525 7.06496 7.32615 7.34473 7.47509 7.56112 7.91868 7.96824 8.08124 8.17723 8.42382 9.10617 9.16943 9.72206 11.20523 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014452 B = 0.002767 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.988524 B =10118.035890 C =11319.701570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.076 3.924 3 Si 0.884 3.116 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.489 4.489 8 H 0.050 0.950 9 C 0.078 3.922 10 H 0.072 0.928 11 C -0.122 4.122 12 C 0.510 3.490 13 O -0.495 6.495 14 N -0.753 5.753 15 C 0.124 3.876 16 C -0.117 4.117 17 C -0.105 4.105 18 C -0.166 4.166 19 C 0.072 3.928 20 O -0.563 6.563 21 C -0.124 4.124 22 C -0.023 4.023 23 C -0.115 4.115 24 C -0.132 4.132 25 C -0.155 4.155 26 C -0.129 4.129 27 C -0.119 4.119 28 H 0.258 0.742 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.391 0.609 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.377 0.623 41 H 0.072 0.928 42 H 0.090 0.910 43 H 0.113 0.887 44 H 0.105 0.895 45 H 0.104 0.896 46 H 0.105 0.895 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.137 -12.177 9.653 17.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.127 4.127 3 Si 0.713 3.287 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.527 4.527 8 H 0.069 0.931 9 C 0.059 3.941 10 H 0.090 0.910 11 C -0.162 4.162 12 C 0.296 3.704 13 O -0.366 6.366 14 N -0.408 5.408 15 C -0.001 4.001 16 C -0.155 4.155 17 C -0.124 4.124 18 C -0.203 4.203 19 C 0.014 3.986 20 O -0.368 6.368 21 C -0.161 4.161 22 C -0.023 4.023 23 C -0.133 4.133 24 C -0.151 4.151 25 C -0.174 4.174 26 C -0.147 4.147 27 C -0.137 4.137 28 H 0.067 0.933 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.224 0.776 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.114 0.886 37 H 0.109 0.891 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.224 0.776 41 H 0.091 0.909 42 H 0.108 0.892 43 H 0.131 0.869 44 H 0.123 0.877 45 H 0.122 0.878 46 H 0.123 0.877 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 6.438 -11.815 9.645 16.555 hybrid contribution 0.760 1.298 0.036 1.504 sum 7.198 -10.517 9.681 16.004 Atomic orbital electron populations 1.69911 1.05869 1.26162 1.49848 1.24813 0.94660 0.98807 0.94397 0.86665 0.80207 0.84533 0.77316 1.19932 1.21225 1.21162 1.20716 0.92371 0.89658 1.49937 0.93140 1.17834 0.98802 0.91496 0.85924 0.90950 1.21765 1.02389 1.00638 0.91412 1.20903 0.77820 0.82767 0.88888 1.90766 1.42675 1.25157 1.77957 1.46218 1.59839 1.27667 1.07126 1.21151 0.99988 0.97875 0.81048 1.21724 1.01011 0.98896 0.93842 1.22244 0.98395 0.96864 0.94925 1.23797 0.99154 0.98827 0.98549 1.23421 0.82874 0.97364 0.94977 1.86519 1.25822 1.47988 1.76460 1.23113 0.98946 0.96426 0.97640 1.20775 0.91733 0.90524 0.99308 1.20957 0.99026 1.00112 0.93172 1.20979 0.96535 1.01841 0.95703 1.20794 0.93118 1.04738 0.98713 1.20983 0.97573 1.01554 0.94560 1.21101 0.97738 1.00085 0.94798 0.93254 0.90615 0.91716 0.77591 0.92063 0.92192 0.91179 0.91237 0.88617 0.89136 0.91097 0.90215 0.77623 0.90922 0.89156 0.86857 0.87671 0.87819 0.87651 0.86806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.13 12.85 55.43 0.71 -25.42 16 2 C 0.08 2.17 5.45 -17.82 -0.10 2.07 16 3 Si 0.88 22.36 29.54 -169.99 -5.02 17.33 16 4 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 6 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 7 C -0.49 -13.28 6.38 -34.44 -0.22 -13.50 16 8 H 0.05 1.37 7.82 -52.49 -0.41 0.96 16 9 C 0.08 1.89 1.69 -92.92 -0.16 1.73 16 10 H 0.07 2.01 6.95 -51.93 -0.36 1.65 16 11 C -0.12 -2.37 4.94 -27.88 -0.14 -2.50 16 12 C 0.51 10.25 7.58 -10.98 -0.08 10.17 16 13 O -0.49 -12.55 14.98 5.56 0.08 -12.47 16 14 N -0.75 -11.17 5.56 -60.29 -0.33 -11.51 16 15 C 0.12 1.65 5.67 -4.04 -0.02 1.63 16 16 C -0.12 -1.10 5.15 -26.73 -0.14 -1.24 16 17 C -0.11 -0.90 3.64 -89.81 -0.33 -1.23 16 18 C -0.17 -1.44 7.48 -25.83 -0.19 -1.63 16 19 C 0.07 0.58 5.21 -25.83 -0.13 0.45 16 20 O -0.56 -4.91 13.68 -35.23 -0.48 -5.40 16 21 C -0.12 -1.00 7.47 -25.92 -0.19 -1.20 16 22 C -0.02 -0.51 4.77 -104.62 -0.50 -1.00 16 23 C -0.11 -2.32 8.86 -39.58 -0.35 -2.68 16 24 C -0.13 -2.39 10.05 -39.58 -0.40 -2.78 16 25 C -0.16 -2.72 10.05 -39.58 -0.40 -3.12 16 26 C -0.13 -2.39 10.05 -39.59 -0.40 -2.79 16 27 C -0.12 -2.53 9.67 -39.58 -0.38 -2.92 16 28 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.08 1.36 7.76 -51.93 -0.40 0.95 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.39 4.52 8.47 -40.82 -0.35 4.17 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.64 7.87 -51.93 -0.41 0.23 16 36 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.09 0.86 7.92 -51.93 -0.41 0.45 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.38 1.72 9.12 45.56 0.42 2.14 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.09 0.78 8.10 -51.93 -0.42 0.36 16 43 H 0.11 2.21 7.75 -52.49 -0.41 1.81 16 44 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 45 H 0.10 1.51 8.06 -52.49 -0.42 1.09 16 46 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 47 H 0.11 2.45 7.95 -52.49 -0.42 2.03 16 LS Contribution 389.36 15.07 5.87 5.87 Total: -1.00 -34.05 389.36 -10.26 -44.31 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -6.95 Total: 7.82 kcal Atomic # 6 Polarization: -16.41 SS G_CDS: -4.13 Total: -20.54 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: 0.38 Total: -36.93 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -0.40 Total: -17.86 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.05 -10.26 -44.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357154427.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.302 kcal (2) G-P(sol) polarization free energy of solvation -34.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds