Wall clock time and date at job start Tue Mar 31 2020 11:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86810 * 119.99718 * 2 1 4 4 H 1.48499 * 109.47021 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46901 * 300.00178 * 3 2 1 6 6 H 1.48496 * 109.47027 * 60.00161 * 3 2 1 7 7 C 1.37878 * 120.00619 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00409 * 184.94244 * 7 2 1 9 9 C 1.50706 * 119.99539 * 4.94142 * 7 2 1 10 10 H 1.08997 * 109.46878 * 329.58841 * 9 7 2 11 11 C 1.52992 * 109.46946 * 209.58159 * 9 7 2 12 12 C 1.50708 * 109.47026 * 65.00293 * 11 9 7 13 13 O 1.21276 * 119.99885 * 359.97438 * 12 11 9 14 14 N 1.34773 * 119.99658 * 179.71950 * 12 11 9 15 15 C 1.46501 * 119.99791 * 180.27672 * 14 12 11 16 16 C 1.53000 * 109.47199 * 180.02562 * 15 14 12 17 17 C 1.53003 * 109.47098 * 179.97438 * 16 15 14 18 18 C 1.53784 * 113.61190 * 274.13706 * 17 16 15 19 19 C 1.53956 * 87.01650 * 220.04546 * 18 17 16 20 20 O 1.42909 * 113.73926 * 139.94726 * 19 18 17 21 21 C 1.53777 * 113.61311 * 176.53170 * 17 16 15 22 22 C 1.50700 * 109.46726 * 89.58502 * 9 7 2 23 23 C 1.38233 * 120.00312 * 56.76701 * 22 9 7 24 24 C 1.38238 * 120.00068 * 179.80622 * 23 22 9 25 25 C 1.38236 * 119.99843 * 0.40255 * 24 23 22 26 26 C 1.38232 * 119.99848 * 359.85381 * 25 24 23 27 27 C 1.38231 * 120.00503 * 359.95420 * 26 25 24 28 28 H 0.96999 * 120.00139 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47694 * 305.00126 * 11 9 7 30 30 H 1.09002 * 109.47172 * 184.99827 * 11 9 7 31 31 H 0.96997 * 120.00578 * 0.27904 * 14 12 11 32 32 H 1.09001 * 109.47483 * 300.00401 * 15 14 12 33 33 H 1.09000 * 109.47282 * 60.00343 * 15 14 12 34 34 H 1.08994 * 109.47332 * 299.99829 * 16 15 14 35 35 H 1.09001 * 109.47244 * 60.00276 * 16 15 14 36 36 H 1.08996 * 112.85217 * 45.33037 * 17 16 15 37 37 H 1.08999 * 113.61826 * 334.56431 * 18 17 16 38 38 H 1.09005 * 113.61324 * 105.47065 * 18 17 16 39 39 H 1.08990 * 113.54302 * 270.80885 * 19 18 17 40 40 H 0.96686 * 114.00231 * 82.40167 * 20 19 18 41 41 H 1.08997 * 113.61361 * 254.52659 * 21 17 16 42 42 H 1.09004 * 113.61821 * 25.43445 * 21 17 16 43 43 H 1.08002 * 119.99807 * 359.97438 * 23 22 9 44 44 H 1.07998 * 119.99579 * 180.22920 * 24 23 22 45 45 H 1.07997 * 119.99442 * 179.83352 * 25 24 23 46 46 H 1.08004 * 119.99448 * 179.97438 * 26 25 24 47 47 H 1.07998 * 120.00260 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0816 -1.1956 0.0811 9 6 1.2553 -2.4968 -0.1113 10 1 0.2698 -2.3891 0.3416 11 6 2.0330 -3.5963 0.6146 12 6 2.0798 -3.2886 2.0892 13 8 1.5443 -2.2882 2.5172 14 7 2.7124 -4.1279 2.9329 15 6 2.7527 -3.8320 4.3671 16 6 3.5262 -4.9341 5.0937 17 6 3.5688 -4.6247 6.5916 18 6 4.7268 -3.6972 6.9962 19 6 4.8947 -4.5840 8.2435 20 8 6.2579 -4.8307 8.5946 21 6 4.2538 -5.7188 7.4273 22 6 1.1027 -2.8652 -1.5646 23 6 2.2213 -2.9906 -2.3671 24 6 2.0815 -3.3325 -3.6992 25 6 0.8225 -3.5409 -4.2308 26 6 -0.2963 -3.4103 -3.4296 27 6 -0.1563 -3.0723 -2.0966 28 1 -0.4850 0.8400 0.0004 29 1 3.0483 -3.6437 0.2210 30 1 1.5379 -4.5548 0.4590 31 1 3.1410 -4.9279 2.5906 32 1 3.2488 -2.8746 4.5268 33 1 1.7359 -3.7838 4.7569 34 1 3.0304 -5.8916 4.9342 35 1 4.5430 -4.9819 4.7040 36 1 2.6019 -4.3140 6.9873 37 1 5.5765 -3.7368 6.3147 38 1 4.4116 -2.6786 7.2228 39 1 4.2911 -4.2613 9.0916 40 1 6.6665 -4.1206 9.1080 41 1 3.5573 -6.3299 8.0014 42 1 4.9740 -6.3121 6.8639 43 1 3.2046 -2.8241 -1.9526 44 1 2.9556 -3.4341 -4.3251 45 1 0.7132 -3.8053 -5.2722 46 1 -1.2799 -3.5727 -3.8451 47 1 -1.0305 -2.9707 -1.4705 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357154427.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:49 Heat of formation + Delta-G solvation = -80.467707 kcal Electronic energy + Delta-G solvation = -25761.662455 eV Core-core repulsion = 22101.253394 eV Total energy + Delta-G solvation = -3660.409062 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.74059 -40.25254 -39.63994 -36.75848 -35.84253 -35.31614 -33.41811 -31.68667 -31.48485 -30.09137 -27.57153 -26.66939 -25.55233 -24.17195 -23.12005 -22.50501 -21.68830 -20.84311 -20.34845 -18.53615 -18.37809 -17.83282 -17.13902 -16.89962 -16.55438 -16.38105 -16.12062 -15.68522 -15.48080 -15.28541 -15.21679 -14.55120 -14.30933 -14.08647 -13.95521 -13.60953 -13.47766 -13.36271 -13.21453 -13.16640 -12.87398 -12.64548 -12.49742 -12.47189 -12.31906 -11.91812 -11.83043 -11.68046 -11.60016 -11.28235 -11.12394 -10.97400 -10.69550 -10.54663 -10.34458 -9.88008 -9.53607 -9.18887 -8.02857 -6.05396 0.78512 0.84577 1.35300 1.37379 1.45962 2.01868 2.44549 2.46251 3.19115 3.34611 3.37063 3.56998 3.68063 3.84174 4.02005 4.12830 4.24666 4.26694 4.35693 4.38566 4.42487 4.47390 4.56821 4.65401 4.68276 4.73647 4.77628 4.85270 4.88410 4.93875 4.99591 5.00755 5.08411 5.17713 5.26979 5.31727 5.39091 5.52882 5.53259 5.67096 5.70480 5.79713 5.84445 5.97171 6.19157 6.43020 6.47362 6.84104 6.90483 7.02522 7.56457 7.65291 9.06934 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014452 B = 0.002767 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.988524 B =10118.035890 C =11319.701570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.020 3.980 3 Si 0.934 3.066 4 H -0.264 1.264 5 H -0.281 1.281 6 H -0.292 1.292 7 C -0.482 4.482 8 H 0.046 0.954 9 C 0.081 3.919 10 H 0.023 0.977 11 C -0.116 4.116 12 C 0.507 3.493 13 O -0.558 6.558 14 N -0.730 5.730 15 C 0.124 3.876 16 C -0.103 4.103 17 C -0.105 4.105 18 C -0.170 4.170 19 C 0.075 3.925 20 O -0.580 6.580 21 C -0.121 4.121 22 C -0.047 4.047 23 C -0.126 4.126 24 C -0.126 4.126 25 C -0.147 4.147 26 C -0.129 4.129 27 C -0.144 4.144 28 H 0.253 0.747 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.412 0.588 32 H 0.041 0.959 33 H 0.048 0.952 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.098 0.902 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.096 0.904 40 H 0.393 0.607 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.116 0.884 44 H 0.141 0.859 45 H 0.144 0.856 46 H 0.131 0.869 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.942 -14.180 8.434 18.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.178 4.178 3 Si 0.761 3.239 4 H -0.188 1.188 5 H -0.207 1.207 6 H -0.219 1.219 7 C -0.521 4.521 8 H 0.064 0.936 9 C 0.062 3.938 10 H 0.041 0.959 11 C -0.156 4.156 12 C 0.294 3.706 13 O -0.435 6.435 14 N -0.385 5.385 15 C 0.000 4.000 16 C -0.141 4.141 17 C -0.124 4.124 18 C -0.208 4.208 19 C 0.016 3.984 20 O -0.388 6.388 21 C -0.158 4.158 22 C -0.048 4.048 23 C -0.145 4.145 24 C -0.144 4.144 25 C -0.165 4.165 26 C -0.147 4.147 27 C -0.162 4.162 28 H 0.062 0.938 29 H 0.114 0.886 30 H 0.110 0.890 31 H 0.248 0.752 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.116 0.884 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.113 0.887 40 H 0.243 0.757 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.134 0.866 44 H 0.159 0.841 45 H 0.162 0.838 46 H 0.149 0.851 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 8.304 -13.874 8.433 18.236 hybrid contribution 0.227 1.813 0.398 1.870 sum 8.532 -12.060 8.831 17.211 Atomic orbital electron populations 1.70060 1.07118 1.26198 1.52359 1.25508 0.95350 1.01800 0.95191 0.85873 0.79629 0.81398 0.76975 1.18836 1.20710 1.21876 1.21012 0.92153 0.91092 1.47793 0.93608 1.17611 0.96396 0.92009 0.87787 0.95873 1.21662 1.03033 1.00232 0.90683 1.21084 0.77403 0.82422 0.89683 1.90746 1.45703 1.28068 1.78951 1.45969 1.57939 1.27185 1.07432 1.21238 0.99841 0.98730 0.80213 1.21641 1.00708 0.97830 0.93915 1.22240 0.98556 0.97338 0.94301 1.23804 0.98900 0.98926 0.99128 1.23466 0.82949 0.96873 0.95121 1.86471 1.26230 1.49218 1.76930 1.23085 0.98925 0.96296 0.97498 1.20585 0.93047 0.92917 0.98261 1.21050 0.98300 1.00781 0.94325 1.21380 0.98266 0.99906 0.94870 1.21267 0.92251 1.02625 1.00351 1.21283 0.99648 1.00421 0.93305 1.21107 0.96851 1.01964 0.96305 0.93843 0.88578 0.89012 0.75184 0.94022 0.93352 0.89544 0.90568 0.88370 0.90072 0.91458 0.88659 0.75733 0.89705 0.89601 0.86558 0.84082 0.83848 0.85068 0.88898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.26 12.85 21.45 0.28 -56.99 16 2 C 0.02 1.17 5.45 84.66 0.46 1.63 16 3 Si 0.93 47.06 29.54 68.60 2.03 49.09 16 4 H -0.26 -12.68 7.11 99.48 0.71 -11.98 16 5 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 6 H -0.29 -14.89 7.11 99.48 0.71 -14.18 16 7 C -0.48 -26.95 6.38 25.60 0.16 -26.79 16 8 H 0.05 2.53 7.82 -2.91 -0.02 2.51 16 9 C 0.08 4.05 1.69 -12.29 -0.02 4.03 16 10 H 0.02 1.37 6.95 -2.39 -0.02 1.35 16 11 C -0.12 -4.52 4.94 29.85 0.15 -4.37 16 12 C 0.51 20.80 7.58 87.66 0.66 21.46 16 13 O -0.56 -29.81 14.98 -3.02 -0.05 -29.86 16 14 N -0.73 -21.26 5.56 -463.06 -2.57 -23.83 16 15 C 0.12 3.30 5.67 86.38 0.49 3.79 16 16 C -0.10 -1.79 5.15 30.60 0.16 -1.64 16 17 C -0.11 -1.67 3.64 -10.27 -0.04 -1.71 16 18 C -0.17 -2.83 7.48 31.18 0.23 -2.60 16 19 C 0.07 1.08 5.21 31.18 0.16 1.24 16 20 O -0.58 -9.28 13.68 -148.98 -2.04 -11.31 16 21 C -0.12 -1.72 7.47 31.12 0.23 -1.49 16 22 C -0.05 -2.14 4.77 -19.86 -0.09 -2.23 16 23 C -0.13 -4.94 8.86 22.27 0.20 -4.74 16 24 C -0.13 -4.09 10.05 22.27 0.22 -3.87 16 25 C -0.15 -4.56 10.05 22.27 0.22 -4.34 16 26 C -0.13 -4.53 10.05 22.27 0.22 -4.31 16 27 C -0.14 -6.23 9.67 22.27 0.22 -6.01 16 28 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 29 H 0.10 3.33 7.76 -2.39 -0.02 3.31 16 30 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 31 H 0.41 8.68 8.47 -92.71 -0.79 7.89 16 32 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.08 1.26 7.87 -2.39 -0.02 1.24 16 36 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.08 1.50 7.92 -2.39 -0.02 1.48 16 38 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 39 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.39 3.05 9.12 -74.07 -0.68 2.38 16 41 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.09 1.32 8.10 -2.38 -0.02 1.30 16 43 H 0.12 4.36 7.75 -2.91 -0.02 4.34 16 44 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 45 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 46 H 0.13 3.85 8.06 -2.91 -0.02 3.83 16 47 H 0.09 4.28 7.95 -2.91 -0.02 4.25 16 Total: -1.00 -78.06 389.36 0.79 -77.27 By element: Atomic # 1 Polarization: 28.07 SS G_CDS: -0.50 Total: 27.58 kcal Atomic # 6 Polarization: -35.59 SS G_CDS: 3.64 Total: -31.94 kcal Atomic # 7 Polarization: -78.52 SS G_CDS: -2.30 Total: -80.82 kcal Atomic # 8 Polarization: -39.09 SS G_CDS: -2.08 Total: -41.17 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Total: -78.06 0.79 -77.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357154427.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.197 kcal (2) G-P(sol) polarization free energy of solvation -78.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds