Wall clock time and date at job start Tue Mar 31 2020 13:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46553 * 2 1 4 4 C 1.50699 * 109.47031 * 120.00223 * 2 1 3 5 5 H 1.07996 * 119.99554 * 125.23786 * 4 2 1 6 6 C 1.37869 * 120.00196 * 305.22801 * 4 2 1 7 7 N 1.31517 * 119.99911 * 159.63168 * 6 4 2 8 8 Si 1.86807 * 120.00077 * 339.63206 * 6 4 2 9 9 H 1.48499 * 109.47131 * 275.52335 * 8 6 4 10 10 H 1.48502 * 109.46816 * 35.52476 * 8 6 4 11 11 H 1.48501 * 109.47058 * 155.51993 * 8 6 4 12 12 C 1.52998 * 109.46906 * 240.00442 * 2 1 3 13 13 N 1.46504 * 109.47242 * 59.99870 * 12 2 1 14 14 C 1.34777 * 119.99798 * 180.02562 * 13 12 2 15 15 O 1.21283 * 120.00211 * 4.96822 * 14 13 12 16 16 C 1.50701 * 119.99977 * 184.96478 * 14 13 12 17 17 C 1.52995 * 109.43859 * 182.77733 * 16 14 13 18 18 C 1.53075 * 109.43588 * 302.64517 * 16 14 13 19 19 C 1.53401 * 108.30153 * 168.25830 * 18 16 14 20 20 O 1.42827 * 108.37662 * 295.28694 * 19 18 16 21 21 C 1.35848 * 117.85681 * 49.20173 * 20 19 18 22 22 C 1.39140 * 118.49722 * 163.02743 * 21 20 19 23 23 C 1.37969 * 120.21375 * 179.56390 * 22 21 20 24 24 C 1.38288 * 119.96031 * 0.04017 * 23 22 21 25 25 C 1.38108 * 119.98015 * 0.06093 * 24 23 22 26 26 C 1.38378 * 121.80454 * 342.74793 * 21 20 19 27 27 H 1.09007 * 109.47314 * 290.26867 * 1 2 3 28 28 H 1.08998 * 109.47832 * 50.26669 * 1 2 3 29 29 H 1.08998 * 109.47130 * 170.26914 * 1 2 3 30 30 H 1.09004 * 109.46406 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47701 * 299.99778 * 3 2 1 32 32 H 1.09001 * 109.47265 * 60.01070 * 3 2 1 33 33 H 0.97006 * 119.99721 * 180.02562 * 7 6 4 34 34 H 1.08999 * 109.46888 * 179.97438 * 12 2 1 35 35 H 1.09004 * 109.47362 * 299.99744 * 12 2 1 36 36 H 0.96998 * 119.99688 * 359.97438 * 13 12 2 37 37 H 1.08997 * 109.47173 * 59.99420 * 17 16 14 38 38 H 1.08998 * 109.47689 * 180.02562 * 17 16 14 39 39 H 1.09007 * 109.46845 * 299.99667 * 17 16 14 40 40 H 1.08997 * 109.69736 * 287.95947 * 18 16 14 41 41 H 1.09004 * 109.69631 * 48.55381 * 18 16 14 42 42 H 1.09000 * 109.68719 * 175.56784 * 19 18 16 43 43 H 1.08993 * 109.68568 * 55.01082 * 19 18 16 44 44 H 1.08000 * 119.89473 * 359.55883 * 22 21 20 45 45 H 1.08003 * 120.02145 * 180.02562 * 23 22 21 46 46 H 1.07997 * 120.00905 * 180.09124 * 24 23 22 47 47 H 1.08003 * 119.83561 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.7211 -1.5366 1.1335 6 6 1.6128 -0.3056 2.4798 7 7 1.7059 -1.1269 3.5028 8 14 0.9119 1.4093 2.7195 9 1 2.0225 2.3737 2.9243 10 1 0.1337 1.7987 1.5161 11 1 0.0224 1.4188 3.9086 12 6 2.0399 -0.7212 -1.2493 13 7 1.5515 -0.0305 -2.4454 14 6 1.8767 -0.4912 -3.6696 15 8 2.4972 -1.5271 -3.7825 16 6 1.4692 0.2808 -4.8980 17 6 1.8979 -0.4891 -6.1487 18 6 -0.0512 0.4587 -4.9067 19 6 -0.4100 1.4847 -5.9891 20 8 0.1465 2.7461 -5.6160 21 6 1.4533 2.7789 -5.2462 22 6 2.1073 4.0069 -5.2273 23 6 3.4318 4.0824 -4.8487 24 6 4.1133 2.9346 -4.4873 25 6 3.4679 1.7138 -4.5068 26 6 2.1385 1.6317 -4.8864 27 1 -0.3634 0.3560 0.9641 28 1 -0.3635 0.6569 -0.7903 29 1 -0.3633 -1.0129 -0.1737 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9563 0.8901 33 1 1.4104 -0.8421 4.3818 34 1 3.1299 -0.7208 -1.2495 35 1 1.6766 -1.7489 -1.2494 36 1 0.9936 0.7580 -2.3563 37 1 1.4156 -1.4665 -6.1568 38 1 1.6038 0.0690 -7.0376 39 1 2.9803 -0.6181 -6.1427 40 1 -0.5313 -0.4941 -5.1301 41 1 -0.3845 0.8194 -3.9336 42 1 -1.4936 1.5708 -6.0688 43 1 0.0050 1.1690 -6.9462 44 1 1.5763 4.9039 -5.5101 45 1 3.9363 5.0373 -4.8348 46 1 5.1497 2.9930 -4.1894 47 1 4.0024 0.8188 -4.2245 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822399607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:38 Heat of formation + Delta-G solvation = -43.295300 kcal Electronic energy + Delta-G solvation = -28194.884374 eV Core-core repulsion = 24536.087229 eV Total energy + Delta-G solvation = -3658.797145 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 2.36 seconds Orbital eigenvalues (eV) -41.43356 -39.25728 -37.63819 -36.84963 -35.17263 -33.29752 -31.47656 -30.87793 -30.45708 -28.40160 -26.60245 -26.34104 -25.12065 -24.41374 -23.66045 -22.72034 -20.81985 -19.30333 -18.99403 -18.12710 -17.24077 -16.41544 -16.32678 -16.07341 -15.37140 -15.15127 -15.00743 -14.74915 -14.29045 -14.04065 -13.74444 -13.70806 -13.37938 -13.08795 -12.90175 -12.68431 -12.59676 -12.26462 -12.22850 -12.10312 -12.00430 -11.94426 -11.59223 -11.31359 -11.19833 -10.86627 -10.76204 -10.45378 -10.33327 -10.22000 -10.04677 -9.55437 -9.21068 -8.90744 -8.71124 -8.53368 -8.37374 -8.30037 -6.18866 -4.11635 1.16221 1.31780 2.82999 3.08661 3.23569 3.32343 3.37387 3.47614 3.67101 4.34198 4.35292 4.39663 4.47191 4.69574 4.79608 4.96088 5.02091 5.07849 5.12001 5.19591 5.30060 5.31479 5.36882 5.58750 5.64582 5.66502 5.77843 5.80681 5.90367 6.04995 6.07439 6.08764 6.17067 6.34005 6.37806 6.44377 6.49661 6.52931 6.62650 6.63662 6.71335 6.77266 6.95601 7.23025 7.26380 7.41986 7.72553 7.89690 8.41961 8.53906 8.89457 9.48120 10.94037 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015728 B = 0.004357 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.820284 B = 6424.856692 C = 6885.089713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.031 3.969 3 C -0.146 4.146 4 C -0.517 4.517 5 H 0.075 0.925 6 C 0.081 3.919 7 N -0.884 5.884 8 Si 0.873 3.127 9 H -0.284 1.284 10 H -0.246 1.246 11 H -0.302 1.302 12 C 0.142 3.858 13 N -0.715 5.715 14 C 0.522 3.478 15 O -0.542 6.542 16 C -0.037 4.037 17 C -0.123 4.123 18 C -0.153 4.153 19 C 0.064 3.936 20 O -0.315 6.315 21 C 0.137 3.863 22 C -0.152 4.152 23 C -0.084 4.084 24 C -0.149 4.149 25 C -0.070 4.070 26 C -0.148 4.148 27 H 0.056 0.944 28 H 0.020 0.980 29 H 0.047 0.953 30 H 0.051 0.949 31 H 0.026 0.974 32 H 0.043 0.957 33 H 0.264 0.736 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.396 0.604 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.111 0.889 43 H 0.069 0.931 44 H 0.129 0.871 45 H 0.128 0.872 46 H 0.125 0.875 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.400 9.256 -20.597 22.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.030 3.970 3 C -0.203 4.203 4 C -0.555 4.555 5 H 0.094 0.906 6 C -0.123 4.123 7 N -0.520 5.520 8 Si 0.704 3.296 9 H -0.212 1.212 10 H -0.172 1.172 11 H -0.231 1.231 12 C 0.020 3.980 13 N -0.365 5.365 14 C 0.306 3.694 15 O -0.420 6.420 16 C -0.040 4.040 17 C -0.180 4.180 18 C -0.190 4.190 19 C -0.011 4.011 20 O -0.229 6.229 21 C 0.092 3.908 22 C -0.171 4.171 23 C -0.102 4.102 24 C -0.167 4.167 25 C -0.088 4.088 26 C -0.150 4.150 27 H 0.074 0.926 28 H 0.039 0.961 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.045 0.955 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.231 0.769 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.112 0.888 41 H 0.102 0.898 42 H 0.129 0.871 43 H 0.087 0.913 44 H 0.147 0.853 45 H 0.146 0.854 46 H 0.143 0.857 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.100 8.605 -20.451 22.287 hybrid contribution -0.504 1.105 0.547 1.332 sum -2.604 9.710 -19.904 22.299 Atomic orbital electron populations 1.22291 0.97854 0.99751 0.99912 1.18683 0.92425 0.92256 0.93670 1.22340 1.00993 0.98333 0.98603 1.20649 1.29292 1.17323 0.88236 0.90647 1.24919 0.94495 0.96842 0.96016 1.70025 1.46565 1.34333 1.01058 0.87529 0.79228 0.86172 0.76695 1.21163 1.17218 1.23071 1.21534 0.98406 0.95920 0.82158 1.46294 1.52497 1.31715 1.06014 1.20038 0.79829 0.85168 0.84346 1.90688 1.41058 1.23587 1.86676 1.19709 0.95524 0.92723 0.96064 1.21724 1.02913 0.99434 0.93960 1.22373 0.94103 1.01435 1.01124 1.23015 0.99355 0.81805 0.96971 1.85996 1.22344 1.32998 1.81557 1.18639 0.83210 0.93384 0.95540 1.20553 0.94768 0.95901 1.05832 1.20946 0.93465 0.98611 0.97138 1.21031 1.00532 0.92319 1.02830 1.20988 0.93097 0.98394 0.96330 1.19421 0.95539 0.92931 1.07062 0.92574 0.96073 0.93380 0.93007 0.95463 0.93892 0.92570 0.92139 0.91758 0.76869 0.91330 0.92291 0.91358 0.88822 0.89801 0.87116 0.91307 0.85261 0.85420 0.85721 0.85745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 7.48 37.16 0.28 -2.63 16 2 C 0.03 0.68 0.50 -155.66 -0.08 0.60 16 3 C -0.15 -3.00 7.64 37.16 0.28 -2.71 16 4 C -0.52 -13.87 8.60 -34.44 -0.30 -14.17 16 5 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 6 C 0.08 2.24 5.22 -17.82 -0.09 2.14 16 7 N -0.88 -26.29 13.96 55.43 0.77 -25.52 16 8 Si 0.87 20.94 22.97 -169.99 -3.90 17.03 16 9 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.25 -5.42 4.63 56.52 0.26 -5.16 16 11 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 12 C 0.14 2.86 4.49 -4.04 -0.02 2.84 16 13 N -0.72 -11.95 4.78 -60.29 -0.29 -12.24 16 14 C 0.52 8.43 5.20 -10.98 -0.06 8.37 16 15 O -0.54 -10.56 15.99 5.55 0.09 -10.47 16 16 C -0.04 -0.46 0.52 -156.74 -0.08 -0.54 16 17 C -0.12 -1.39 7.53 37.15 0.28 -1.11 16 18 C -0.15 -1.56 4.90 -26.48 -0.13 -1.69 16 19 C 0.06 0.55 6.96 37.36 0.26 0.81 16 20 O -0.31 -3.58 10.27 -19.26 -0.20 -3.78 16 21 C 0.14 1.67 6.47 -39.20 -0.25 1.42 16 22 C -0.15 -1.67 9.94 -39.35 -0.39 -2.07 16 23 C -0.08 -0.86 10.04 -39.66 -0.40 -1.26 16 24 C -0.15 -1.69 10.04 -39.61 -0.40 -2.09 16 25 C -0.07 -0.91 9.04 -39.53 -0.36 -1.27 16 26 C -0.15 -1.88 4.64 -104.44 -0.48 -2.36 16 27 H 0.06 1.23 4.02 -51.93 -0.21 1.03 16 28 H 0.02 0.37 7.14 -51.93 -0.37 -0.01 16 29 H 0.05 0.98 8.12 -51.93 -0.42 0.56 16 30 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.03 0.48 6.86 -51.93 -0.36 0.13 16 32 H 0.04 0.93 2.66 -51.93 -0.14 0.79 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 35 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.40 6.18 5.28 -40.82 -0.22 5.96 16 37 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 38 H 0.06 0.54 6.65 -51.93 -0.35 0.20 16 39 H 0.07 0.84 8.05 -51.92 -0.42 0.42 16 40 H 0.09 0.84 8.09 -51.93 -0.42 0.42 16 41 H 0.08 0.92 7.03 -51.93 -0.37 0.56 16 42 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.07 0.52 6.56 -51.93 -0.34 0.18 16 44 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 45 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 46 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 47 H 0.12 1.74 7.36 -52.48 -0.39 1.36 16 LS Contribution 355.03 15.07 5.35 5.35 Total: -1.00 -31.10 355.03 -7.18 -38.28 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -7.06 Total: 7.06 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: -1.94 Total: -15.71 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.49 Total: -37.76 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: -0.11 Total: -14.25 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -3.90 Total: 17.03 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.10 -7.18 -38.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822399607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.017 kcal (2) G-P(sol) polarization free energy of solvation -31.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.36 seconds