Wall clock time and date at job start Tue Mar 31 2020 13:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46502 * 120.00240 * 2 1 4 4 C 1.53006 * 109.46693 * 269.99946 * 3 2 1 5 5 H 1.09001 * 115.54854 * 29.33095 * 4 3 2 6 6 C 1.52998 * 117.49768 * 243.62029 * 4 3 2 7 7 C 1.52998 * 117.49622 * 174.99695 * 4 3 2 8 8 C 1.52999 * 117.49859 * 214.97958 * 7 4 3 9 9 C 1.52999 * 117.49946 * 359.97438 * 7 4 3 10 10 C 1.34780 * 119.99723 * 179.97438 * 2 1 3 11 11 O 1.21280 * 119.99713 * 180.02562 * 10 2 1 12 12 C 1.50696 * 119.99998 * 0.27532 * 10 2 1 13 13 C 1.50702 * 109.46745 * 179.72429 * 12 10 2 14 14 C 1.38298 * 119.92917 * 269.72286 * 13 12 10 15 15 C 1.38110 * 120.06470 * 179.72858 * 14 13 12 16 16 C 1.38871 * 119.92906 * 0.57170 * 15 14 13 17 17 O 1.35756 * 120.06687 * 179.68157 * 16 15 14 18 18 C 1.34827 * 116.99928 * 174.48653 * 17 16 15 19 19 H 1.07997 * 120.00174 * 5.06066 * 18 17 16 20 20 C 1.38653 * 120.00116 * 185.05990 * 18 17 16 21 21 N 1.31565 * 119.99777 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00382 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46785 * 60.00332 * 22 20 18 24 24 H 1.48500 * 109.47259 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47109 * 300.00333 * 22 20 18 26 26 C 1.38870 * 119.86787 * 359.70400 * 16 15 14 27 27 C 1.38099 * 119.92846 * 0.02562 * 26 16 15 28 28 H 1.09002 * 109.47159 * 270.00461 * 1 2 3 29 29 H 1.09000 * 109.47071 * 29.99785 * 1 2 3 30 30 H 1.08994 * 109.47135 * 150.00233 * 1 2 3 31 31 H 1.08995 * 109.46824 * 29.99316 * 3 2 1 32 32 H 1.08998 * 109.47458 * 150.00179 * 3 2 1 33 33 H 1.09000 * 117.49638 * 0.02562 * 6 4 3 34 34 H 1.09001 * 117.49744 * 145.02153 * 6 4 3 35 35 H 1.09001 * 109.47213 * 59.99991 * 8 7 4 36 36 H 1.09005 * 109.47155 * 180.02562 * 8 7 4 37 37 H 1.09001 * 109.47301 * 300.00112 * 8 7 4 38 38 H 1.08996 * 109.47385 * 59.99739 * 9 7 4 39 39 H 1.09002 * 109.47473 * 179.97438 * 9 7 4 40 40 H 1.09001 * 109.46903 * 299.99827 * 9 7 4 41 41 H 1.08998 * 109.47180 * 299.72376 * 12 10 2 42 42 H 1.08994 * 109.47378 * 59.72578 * 12 10 2 43 43 H 1.07993 * 119.96710 * 359.97438 * 14 13 12 44 44 H 1.08002 * 120.02889 * 180.27411 * 15 14 13 45 45 H 0.96997 * 119.99911 * 180.02562 * 21 20 18 46 46 H 1.08003 * 120.04415 * 180.02562 * 26 16 15 47 47 H 1.08002 * 119.96747 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 -1.4426 5 1 1.7095 1.3868 -2.1715 6 6 3.9075 1.7986 -1.9076 7 6 3.1052 3.0772 -1.6580 8 6 2.6654 3.8852 -2.8805 9 6 3.4523 3.8982 -0.4145 10 6 2.1389 -1.1673 0.0005 11 8 3.3517 -1.1673 0.0010 12 6 1.3853 -2.4723 -0.0052 13 6 2.3647 -3.6177 -0.0102 14 6 2.8087 -4.1407 -1.2110 15 6 3.7104 -5.1867 -1.2189 16 6 4.1622 -5.7211 -0.0193 17 8 5.0437 -6.7535 -0.0238 18 6 5.5289 -7.1493 1.1702 19 1 5.1527 -6.7053 2.0800 20 6 6.5108 -8.1264 1.2302 21 7 6.9695 -8.6669 0.1218 22 14 7.1826 -8.6753 2.8845 23 1 6.0775 -9.2263 3.7093 24 1 8.2145 -9.7229 2.6769 25 1 7.7894 -7.5135 3.5825 26 6 3.7101 -5.1975 1.1848 27 6 2.8127 -4.1479 1.1861 28 1 -0.3633 0.0001 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6085 2.0283 0.5137 32 1 3.1500 1.1384 0.5138 33 1 4.6829 1.5416 -1.1860 34 1 4.1219 1.5330 -2.9428 35 1 1.5953 4.0834 -2.8193 36 1 3.2092 4.8296 -2.9068 37 1 2.8786 3.3183 -3.7867 38 1 4.1527 3.3393 0.2061 39 1 3.9080 4.8411 -0.7170 40 1 2.5439 4.0990 0.1535 41 1 0.7587 -2.5339 0.8845 42 1 0.7587 -2.5262 -0.8953 43 1 2.4529 -3.7281 -2.1435 44 1 4.0602 -5.5918 -2.1570 45 1 7.6561 -9.3507 0.1638 46 1 4.0599 -5.6106 2.1194 47 1 2.4610 -3.7399 2.1222 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000856462248.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:12 Heat of formation + Delta-G solvation = -18.673986 kcal Electronic energy + Delta-G solvation = -25846.283725 eV Core-core repulsion = 22188.554240 eV Total energy + Delta-G solvation = -3657.729485 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.11161 -38.97605 -38.39995 -36.46760 -35.30787 -32.43593 -31.49965 -30.10036 -29.97203 -28.21699 -27.46714 -26.92004 -25.62569 -24.76845 -21.90465 -21.58106 -20.62116 -19.18294 -18.85586 -17.91468 -17.00563 -16.89440 -16.24070 -15.73716 -14.92996 -14.75289 -14.50451 -14.29441 -14.13277 -13.98259 -13.59846 -13.49159 -13.30594 -13.10463 -13.00705 -12.73976 -12.63793 -12.59355 -12.48699 -12.28455 -12.09157 -11.81860 -11.62149 -11.45698 -11.32950 -11.19928 -10.77811 -10.67805 -10.57955 -10.38890 -9.98963 -9.91240 -9.53435 -9.26580 -8.75835 -8.70112 -8.08004 -7.09320 -6.38902 -3.97443 2.31595 2.32879 2.81589 2.98664 3.16786 3.18983 3.20996 3.54946 4.02017 4.43090 4.47499 4.57707 4.64070 4.80118 4.85755 4.96880 5.11271 5.15027 5.19644 5.24449 5.28206 5.31950 5.35670 5.40339 5.42086 5.49347 5.56997 5.64517 5.65142 5.72460 5.73872 5.78992 5.79965 5.83559 5.91619 6.07114 6.09835 6.28163 6.47530 6.48683 6.77142 6.98321 7.11685 7.30276 7.37983 7.44142 7.51579 7.90963 8.06439 8.36441 9.06752 9.77904 10.79281 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019908 B = 0.002421 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.163182 B =11562.830125 C =11952.156563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.626 5.626 3 C 0.148 3.852 4 C -0.160 4.160 5 H 0.102 0.898 6 C -0.159 4.159 7 C -0.130 4.130 8 C -0.113 4.113 9 C -0.116 4.116 10 C 0.510 3.490 11 O -0.514 6.514 12 C -0.078 4.078 13 C -0.169 4.169 14 C -0.060 4.060 15 C -0.191 4.191 16 C 0.156 3.844 17 O -0.179 6.179 18 C -0.391 4.391 19 H 0.091 0.909 20 C 0.038 3.962 21 N -0.864 5.864 22 Si 0.941 3.059 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.270 1.270 26 C -0.232 4.232 27 C -0.057 4.057 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.107 0.893 44 H 0.116 0.884 45 H 0.270 0.730 46 H 0.126 0.874 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.250 22.596 -1.295 26.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.362 5.362 3 C 0.025 3.975 4 C -0.179 4.179 5 H 0.120 0.880 6 C -0.196 4.196 7 C -0.131 4.131 8 C -0.170 4.170 9 C -0.173 4.173 10 C 0.298 3.702 11 O -0.388 6.388 12 C -0.118 4.118 13 C -0.170 4.170 14 C -0.078 4.078 15 C -0.210 4.210 16 C 0.103 3.897 17 O -0.082 6.082 18 C -0.467 4.467 19 H 0.108 0.892 20 C -0.166 4.166 21 N -0.499 5.499 22 Si 0.765 3.235 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.195 1.195 26 C -0.251 4.251 27 C -0.075 4.075 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.116 0.884 34 H 0.109 0.891 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.125 0.875 44 H 0.134 0.866 45 H 0.080 0.920 46 H 0.144 0.856 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -13.305 22.247 -1.530 25.967 hybrid contribution 0.213 -0.219 0.791 0.848 sum -13.092 22.028 -0.739 25.636 Atomic orbital electron populations 1.21772 0.79805 1.03131 1.01712 1.47952 1.06700 1.05945 1.75584 1.20929 0.97834 0.84448 0.94247 1.22862 0.97099 0.99534 0.98420 0.88012 1.23272 0.94291 0.99613 1.02415 1.21619 1.04639 0.89079 0.97726 1.21339 1.00895 0.99334 0.95461 1.21349 1.01161 0.99317 0.95504 1.21058 0.88449 0.85061 0.75611 1.90733 1.13919 1.86943 1.47165 1.20439 0.97470 0.90351 1.03520 1.18657 1.04680 0.99966 0.93697 1.20386 0.96004 0.95136 0.96261 1.20148 1.03760 1.00903 0.96225 1.19371 0.89673 0.87433 0.93268 1.83977 1.50608 1.40719 1.32924 1.21273 1.20602 1.21655 0.83163 0.89172 1.25280 0.95876 0.96185 0.99214 1.70035 1.27403 1.25630 1.26877 0.85790 0.78796 0.78652 0.80242 1.19543 1.20309 1.19521 1.21096 1.03935 1.01735 0.98359 1.20499 0.95821 0.95040 0.96161 0.92710 0.91343 0.90802 0.90657 0.89789 0.88407 0.89089 0.92434 0.92168 0.92539 0.92215 0.92166 0.92332 0.89173 0.89138 0.87495 0.86592 0.92044 0.85626 0.87901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.53 10.25 59.85 0.61 1.14 16 2 N -0.63 -6.73 2.87 -181.57 -0.52 -7.25 16 3 C 0.15 1.50 4.77 -4.04 -0.02 1.48 16 4 C -0.16 -1.57 5.73 -90.62 -0.52 -2.09 16 5 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 6 C -0.16 -1.72 9.47 -26.73 -0.25 -1.97 16 7 C -0.13 -1.11 2.70 -154.51 -0.42 -1.52 16 8 C -0.11 -0.81 9.85 37.16 0.37 -0.44 16 9 C -0.12 -0.86 8.86 37.16 0.33 -0.53 16 10 C 0.51 7.42 7.67 -10.99 -0.08 7.33 16 11 O -0.51 -9.93 15.61 5.56 0.09 -9.85 16 12 C -0.08 -1.03 4.38 -29.04 -0.13 -1.15 16 13 C -0.17 -3.04 4.38 -104.57 -0.46 -3.50 16 14 C -0.06 -1.14 9.69 -39.61 -0.38 -1.52 16 15 C -0.19 -4.29 9.99 -39.39 -0.39 -4.68 16 16 C 0.16 3.97 6.65 -39.11 -0.26 3.71 16 17 O -0.18 -5.30 9.76 0.04 0.00 -5.30 16 18 C -0.39 -11.28 9.49 30.89 0.29 -10.99 16 19 H 0.09 2.41 5.20 -52.49 -0.27 2.14 16 20 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 21 N -0.86 -25.98 13.67 55.48 0.76 -25.22 16 22 Si 0.94 21.10 29.55 -169.99 -5.02 16.07 16 23 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 24 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 25 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 26 C -0.23 -5.33 9.17 -39.40 -0.36 -5.69 16 27 C -0.06 -1.11 9.69 -39.61 -0.38 -1.50 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.35 8.07 -51.93 -0.42 -0.07 16 30 H 0.07 0.43 6.43 -51.93 -0.33 0.10 16 31 H 0.08 0.59 7.70 -51.93 -0.40 0.19 16 32 H 0.08 1.04 7.15 -51.93 -0.37 0.67 16 33 H 0.10 1.19 7.94 -51.93 -0.41 0.78 16 34 H 0.09 0.98 8.05 -51.93 -0.42 0.56 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.38 7.92 -51.93 -0.41 -0.03 16 37 H 0.06 0.41 7.90 -51.93 -0.41 0.00 16 38 H 0.06 0.48 7.90 -51.93 -0.41 0.07 16 39 H 0.06 0.40 7.92 -51.93 -0.41 -0.02 16 40 H 0.06 0.38 7.83 -51.93 -0.41 -0.03 16 41 H 0.09 0.98 8.05 -51.93 -0.42 0.56 16 42 H 0.09 0.97 7.34 -51.93 -0.38 0.59 16 43 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 44 H 0.12 2.51 8.06 -52.49 -0.42 2.08 16 45 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 46 H 0.13 2.87 5.64 -52.48 -0.30 2.57 16 47 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 388.97 15.07 5.86 5.86 Total: -1.00 -34.48 388.97 -8.44 -42.92 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -7.44 Total: 3.70 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: -2.16 Total: -20.93 kcal Atomic # 7 Polarization: -32.71 SS G_CDS: 0.24 Total: -32.48 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: 0.09 Total: -15.14 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.48 -8.44 -42.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856462248.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.242 kcal (2) G-P(sol) polarization free energy of solvation -34.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds