Wall clock time and date at job start Tue Mar 31 2020 13:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 110.43631 * 2 1 4 4 C 1.54101 * 110.48679 * 122.54105 * 2 1 3 5 5 O 1.43741 * 107.29182 * 116.64731 * 4 2 1 6 6 C 1.44379 * 106.97867 * 26.51388 * 5 4 2 7 7 H 1.08996 * 110.61565 * 78.43943 * 6 5 4 8 8 C 1.52998 * 110.61969 * 201.27820 * 6 5 4 9 9 C 1.52989 * 109.47377 * 293.54578 * 8 6 5 10 10 C 1.50702 * 109.47428 * 179.97438 * 9 8 6 11 11 O 1.21284 * 119.99858 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00563 * 179.97438 * 10 9 8 13 13 C 1.37144 * 119.99719 * 354.95811 * 12 10 9 14 14 H 1.08003 * 120.00026 * 344.74243 * 13 12 10 15 15 C 1.38889 * 120.00015 * 164.73583 * 13 12 10 16 16 N 1.31422 * 119.99762 * 343.62477 * 15 13 12 17 17 Si 1.86795 * 120.00137 * 163.62402 * 15 13 12 18 18 H 1.48501 * 109.47066 * 89.99925 * 17 15 13 19 19 H 1.48494 * 109.47227 * 210.00457 * 17 15 13 20 20 H 1.48503 * 109.47110 * 330.00271 * 17 15 13 21 21 C 1.39782 * 120.00314 * 174.95629 * 12 10 9 22 22 C 1.38960 * 120.07681 * 101.20821 * 21 12 10 23 23 C 1.38087 * 119.91897 * 179.74919 * 22 21 12 24 24 C 1.38311 * 120.07862 * 0.54901 * 23 22 21 25 25 C 1.38303 * 120.15280 * 359.70747 * 24 23 22 26 26 C 1.38081 * 120.08179 * 0.02562 * 25 24 23 27 27 C 1.54809 * 110.49139 * 237.30914 * 2 1 3 28 28 H 1.09002 * 109.47406 * 298.91553 * 1 2 3 29 29 H 1.09006 * 109.47360 * 178.90947 * 1 2 3 30 30 H 1.09005 * 109.47194 * 58.91104 * 1 2 3 31 31 H 1.09002 * 109.47592 * 59.29536 * 3 2 1 32 32 H 1.08998 * 109.47469 * 179.29874 * 3 2 1 33 33 H 1.08997 * 109.47060 * 299.29575 * 3 2 1 34 34 H 1.08999 * 109.88049 * 236.07328 * 4 2 1 35 35 H 1.09000 * 109.88048 * 357.07694 * 4 2 1 36 36 H 1.09002 * 109.46827 * 53.54946 * 8 6 5 37 37 H 1.09003 * 109.46606 * 173.54327 * 8 6 5 38 38 H 1.09002 * 109.47443 * 299.99991 * 9 8 6 39 39 H 1.09003 * 109.47458 * 60.00271 * 9 8 6 40 40 H 0.97001 * 119.99386 * 185.00949 * 16 15 13 41 41 H 1.07993 * 120.03884 * 0.02562 * 22 21 12 42 42 H 1.07999 * 119.96287 * 180.27770 * 23 22 21 43 43 H 1.07999 * 119.92263 * 179.71935 * 24 23 22 44 44 H 1.08009 * 119.95646 * 180.02562 * 25 24 23 45 45 H 1.08002 * 120.03705 * 180.02562 * 26 25 24 46 46 H 1.09001 * 110.90584 * 338.64322 * 27 2 1 47 47 H 1.08994 * 110.90567 * 102.24099 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0642 1.4337 0.0000 4 6 2.0693 -0.7765 1.2169 5 8 2.7954 -1.9100 0.7129 6 6 3.2659 -1.5569 -0.6056 7 1 4.1455 -0.9165 -0.5405 8 6 3.5757 -2.8135 -1.4216 9 6 4.7661 -3.5454 -0.7990 10 6 5.0709 -4.7835 -1.6023 11 8 4.4019 -5.0536 -2.5773 12 7 6.0873 -5.5901 -1.2380 13 6 6.9087 -5.2318 -0.1999 14 1 6.9071 -4.2149 0.1638 15 6 7.7424 -6.1768 0.3840 16 7 7.5286 -7.4573 0.1798 17 14 9.1677 -5.6277 1.4594 18 1 8.7123 -5.5224 2.8689 19 1 10.2682 -6.6204 1.3675 20 1 9.6555 -4.3037 0.9966 21 6 6.3043 -6.7918 -1.9183 22 6 7.3083 -6.8788 -2.8752 23 6 7.5232 -8.0690 -3.5415 24 6 6.7333 -9.1704 -3.2657 25 6 5.7298 -9.0857 -2.3178 26 6 5.5128 -7.9003 -1.6437 27 6 2.0719 -0.7832 -1.2204 28 1 -0.3634 0.4969 0.8995 29 1 -0.3634 -1.0275 -0.0196 30 1 -0.3634 0.5307 -0.8801 31 1 1.6994 1.9575 0.8836 32 1 3.1539 1.4154 0.0126 33 1 1.7198 1.9497 -0.8962 34 1 2.7349 -0.1386 1.7983 35 1 1.2401 -1.1119 1.8398 36 1 2.7055 -3.4699 -1.4222 37 1 3.8183 -2.5308 -2.4460 38 1 5.6364 -2.8890 -0.7983 39 1 4.5236 -3.8281 0.2255 40 1 8.0648 -8.1187 0.6446 41 1 7.9225 -6.0180 -3.0941 42 1 8.3062 -8.1388 -4.2821 43 1 6.9007 -10.0987 -3.7917 44 1 5.1151 -9.9478 -2.1046 45 1 4.7292 -7.8351 -0.9033 46 1 1.3197 -1.4714 -1.6062 47 1 2.4103 -0.1018 -2.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888564474.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:10 Heat of formation + Delta-G solvation = -61.281564 kcal Electronic energy + Delta-G solvation = -26844.482678 eV Core-core repulsion = 23184.905590 eV Total energy + Delta-G solvation = -3659.577088 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -39.95609 -39.24554 -37.26822 -34.85795 -34.61870 -32.96616 -31.61382 -29.82998 -29.55849 -28.28287 -27.57627 -25.99992 -24.95212 -24.15409 -21.54398 -21.44164 -20.57651 -19.40918 -19.00449 -17.54242 -16.34295 -16.25385 -15.47957 -15.40050 -14.96991 -14.75326 -14.49336 -14.25773 -14.00423 -13.80369 -13.63488 -13.35572 -13.23948 -12.86116 -12.58754 -12.39494 -12.05846 -12.01784 -11.79879 -11.60642 -11.49153 -11.26750 -11.20324 -11.10796 -10.86155 -10.82114 -10.68964 -10.48223 -10.38786 -10.29545 -10.23866 -10.16842 -9.46017 -9.36217 -8.50690 -8.07120 -7.81524 -7.50074 -6.20291 -3.96336 2.52093 2.56797 3.10964 3.21030 3.23242 3.82822 3.97543 4.06328 4.32985 4.53819 4.67322 4.75403 4.91063 5.08009 5.12093 5.14287 5.22183 5.38783 5.45947 5.49393 5.60139 5.62829 5.72484 5.73614 5.82238 5.83697 5.88106 5.94122 5.97833 6.00214 6.05092 6.08865 6.18534 6.27917 6.39841 6.50752 6.61010 6.67956 6.79790 6.89936 7.09648 7.10725 7.37287 7.41082 7.50490 7.69466 7.82436 8.03502 8.48718 9.04955 9.42869 9.86452 10.65472 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015580 B = 0.003432 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.782327 B = 8155.492035 C = 9346.252976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.103 4.103 3 C -0.137 4.137 4 C 0.054 3.946 5 O -0.367 6.367 6 C 0.078 3.922 7 H 0.067 0.933 8 C -0.093 4.093 9 C -0.114 4.114 10 C 0.464 3.536 11 O -0.600 6.600 12 N -0.417 5.417 13 C -0.349 4.349 14 H 0.103 0.897 15 C 0.043 3.957 16 N -0.849 5.849 17 Si 0.919 3.081 18 H -0.277 1.277 19 H -0.282 1.282 20 H -0.269 1.269 21 C 0.242 3.758 22 C -0.125 4.125 23 C -0.123 4.123 24 C -0.147 4.147 25 C -0.122 4.122 26 C -0.067 4.067 27 C -0.141 4.141 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.271 0.729 41 H 0.106 0.894 42 H 0.105 0.895 43 H 0.103 0.897 44 H 0.105 0.895 45 H 0.104 0.896 46 H 0.080 0.920 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.257 10.967 -0.015 13.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.104 4.104 3 C -0.195 4.195 4 C -0.023 4.023 5 O -0.286 6.286 6 C 0.021 3.979 7 H 0.085 0.915 8 C -0.131 4.131 9 C -0.154 4.154 10 C 0.255 3.745 11 O -0.485 6.485 12 N -0.133 5.133 13 C -0.475 4.475 14 H 0.121 0.879 15 C -0.164 4.164 16 N -0.485 5.485 17 Si 0.745 3.255 18 H -0.203 1.203 19 H -0.207 1.207 20 H -0.194 1.194 21 C 0.151 3.849 22 C -0.144 4.144 23 C -0.142 4.142 24 C -0.166 4.166 25 C -0.141 4.141 26 C -0.087 4.087 27 C -0.179 4.179 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.110 0.890 40 H 0.082 0.918 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.123 0.877 45 H 0.122 0.878 46 H 0.098 0.902 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.401 10.443 -0.349 12.805 hybrid contribution 0.970 0.334 0.859 1.338 sum -6.431 10.777 0.511 12.560 Atomic orbital electron populations 1.21838 0.93584 1.02194 1.01709 1.21961 0.96553 0.96060 0.95792 1.21863 1.01093 0.94656 1.01864 1.23259 0.95604 0.88172 0.95281 1.88953 1.71761 1.36484 1.31407 1.23234 0.95549 0.96360 0.82777 0.91482 1.21356 0.99190 0.94547 0.98008 1.21305 0.98007 0.95362 1.00687 1.20286 0.80754 0.86716 0.86744 1.90555 1.51899 1.76242 1.29837 1.41395 1.26295 1.16543 1.29114 1.19594 1.18578 0.97065 1.12302 0.87920 1.25261 0.98757 0.94809 0.97569 1.69935 1.38558 0.99926 1.40079 0.86053 0.80968 0.78669 0.79799 1.20265 1.20737 1.19389 1.17110 0.92554 0.86013 0.89184 1.20983 0.98773 0.97435 0.97256 1.20651 0.99733 0.93361 1.00462 1.20717 0.97850 0.97730 1.00269 1.20677 0.98721 0.96934 0.97748 1.20808 0.98776 0.92026 0.97060 1.23297 0.98466 0.98993 0.97147 0.92588 0.92128 0.92459 0.92469 0.92331 0.92355 0.92638 0.90180 0.90806 0.90399 0.90385 0.89049 0.91786 0.87615 0.87709 0.87845 0.87663 0.87795 0.90164 0.90339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 8.26 37.16 0.31 -0.85 16 2 C -0.10 -1.01 0.99 -152.98 -0.15 -1.17 16 3 C -0.14 -1.13 8.26 37.16 0.31 -0.82 16 4 C 0.05 0.63 7.04 37.73 0.27 0.89 16 5 O -0.37 -5.65 10.89 -35.23 -0.38 -6.04 16 6 C 0.08 1.09 3.32 -25.68 -0.09 1.00 16 7 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 8 C -0.09 -1.57 4.29 -26.74 -0.11 -1.69 16 9 C -0.11 -2.24 4.16 -27.89 -0.12 -2.36 16 10 C 0.46 11.30 7.58 -10.98 -0.08 11.22 16 11 O -0.60 -15.87 15.96 5.55 0.09 -15.78 16 12 N -0.42 -10.68 2.66 -58.98 -0.16 -10.84 16 13 C -0.35 -8.83 9.19 -14.93 -0.14 -8.97 16 14 H 0.10 2.43 6.46 -52.48 -0.34 2.09 16 15 C 0.04 1.09 5.24 -17.49 -0.09 1.00 16 16 N -0.85 -22.30 10.34 55.49 0.57 -21.73 16 17 Si 0.92 19.61 29.59 -169.99 -5.03 14.58 16 18 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 19 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 20 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 21 C 0.24 6.16 2.29 -83.70 -0.19 5.97 16 22 C -0.12 -2.97 9.95 -39.37 -0.39 -3.36 16 23 C -0.12 -2.57 10.04 -39.61 -0.40 -2.97 16 24 C -0.15 -2.95 10.04 -39.53 -0.40 -3.34 16 25 C -0.12 -2.60 10.04 -39.61 -0.40 -2.99 16 26 C -0.07 -1.65 8.66 -39.37 -0.34 -1.99 16 27 C -0.14 -1.60 5.71 -24.73 -0.14 -1.74 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.56 8.13 -51.93 -0.42 0.13 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.59 7.69 -51.93 -0.40 0.19 16 35 H 0.08 0.85 7.69 -51.93 -0.40 0.45 16 36 H 0.07 1.35 8.10 -51.93 -0.42 0.93 16 37 H 0.08 1.29 8.10 -51.93 -0.42 0.87 16 38 H 0.08 1.44 7.52 -51.93 -0.39 1.05 16 39 H 0.09 1.87 7.92 -51.93 -0.41 1.46 16 40 H 0.27 6.86 8.32 -40.82 -0.34 6.52 16 41 H 0.11 2.45 8.06 -52.49 -0.42 2.03 16 42 H 0.10 1.85 8.06 -52.49 -0.42 1.42 16 43 H 0.10 1.72 8.06 -52.49 -0.42 1.29 16 44 H 0.11 1.92 8.06 -52.48 -0.42 1.50 16 45 H 0.10 2.59 8.06 -52.49 -0.42 2.17 16 46 H 0.08 0.94 7.78 -51.93 -0.40 0.54 16 47 H 0.08 0.78 7.87 -51.93 -0.41 0.37 16 LS Contribution 380.53 15.07 5.73 5.73 Total: -1.00 -29.90 380.53 -9.13 -39.03 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -7.80 Total: 7.20 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: -2.16 Total: -12.17 kcal Atomic # 7 Polarization: -32.98 SS G_CDS: 0.42 Total: -32.57 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -0.30 Total: -21.82 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.03 Total: 14.58 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.90 -9.13 -39.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888564474.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.252 kcal (2) G-P(sol) polarization free energy of solvation -29.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds