Wall clock time and date at job start Tue Mar 31 2020 13:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47040 * 2 1 4 4 C 1.52999 * 109.46994 * 120.00006 * 2 1 3 5 5 C 1.53005 * 109.47051 * 175.00125 * 4 2 1 6 6 C 1.52999 * 109.47051 * 179.97438 * 5 4 2 7 7 N 1.46495 * 109.46990 * 180.02562 * 6 5 4 8 8 C 1.34775 * 120.00065 * 179.97438 * 7 6 5 9 9 O 1.21726 * 120.00073 * 359.97438 * 8 7 6 10 10 C 1.46258 * 120.00322 * 179.97438 * 8 7 6 11 11 C 1.35015 * 120.00185 * 179.97438 * 10 8 7 12 12 C 1.46966 * 119.99859 * 179.72327 * 11 10 8 13 13 C 1.40020 * 120.10099 * 359.72646 * 12 11 10 14 14 C 1.37601 * 119.89632 * 179.78802 * 13 12 11 15 15 C 1.39173 * 120.10087 * 0.48795 * 14 13 12 16 16 O 1.35568 * 119.90002 * 179.76457 * 15 14 13 17 17 C 1.34779 * 117.00070 * 174.42258 * 16 15 14 18 18 H 1.07996 * 120.00296 * 5.05680 * 17 16 15 19 19 C 1.38728 * 119.99880 * 185.05920 * 17 16 15 20 20 N 1.31508 * 119.99925 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 119.99891 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.46999 * 90.00502 * 21 19 17 23 23 H 1.48502 * 109.46807 * 210.00364 * 21 19 17 24 24 H 1.48497 * 109.47364 * 330.00385 * 21 19 17 25 25 C 1.39182 * 120.20443 * 359.74007 * 15 14 13 26 26 C 1.37597 * 120.10073 * 0.02562 * 25 15 14 27 27 H 1.08997 * 109.47232 * 299.99755 * 1 2 3 28 28 H 1.08998 * 109.47041 * 60.00651 * 1 2 3 29 29 H 1.09003 * 109.46779 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47048 * 239.99948 * 2 1 3 31 31 H 1.09008 * 109.46628 * 299.99658 * 3 2 1 32 32 H 1.08989 * 109.47453 * 59.99782 * 3 2 1 33 33 H 1.09006 * 109.47056 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47600 * 54.99803 * 4 2 1 35 35 H 1.09003 * 109.47246 * 294.99743 * 4 2 1 36 36 H 1.08997 * 109.46792 * 59.99657 * 5 4 2 37 37 H 1.09003 * 109.46783 * 299.99901 * 5 4 2 38 38 H 1.09000 * 109.47095 * 59.99600 * 6 5 4 39 39 H 1.09000 * 109.46745 * 299.99703 * 6 5 4 40 40 H 0.97004 * 120.00076 * 359.97438 * 7 6 5 41 41 H 1.08007 * 119.99439 * 359.72456 * 10 8 7 42 42 H 1.07994 * 120.00134 * 359.72623 * 11 10 8 43 43 H 1.08001 * 120.05478 * 0.02562 * 13 12 11 44 44 H 1.08000 * 119.94685 * 180.22931 * 14 13 12 45 45 H 0.96995 * 120.00201 * 179.97438 * 20 19 17 46 46 H 1.07995 * 119.94818 * 179.97438 * 25 15 14 47 47 H 1.07996 * 120.05582 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.8310 1.1880 6 6 4.0749 -1.5517 2.4375 7 7 5.5349 -1.6563 2.3792 8 6 6.2080 -2.2576 3.3801 9 8 5.6028 -2.7134 4.3328 10 6 7.6657 -2.3625 3.3216 11 6 8.3400 -2.9645 4.3245 12 6 9.8042 -3.0752 4.2628 13 6 10.5015 -2.5624 3.1622 14 6 11.8727 -2.6645 3.1108 15 6 12.5657 -3.2854 4.1457 16 8 13.9163 -3.3880 4.0886 17 6 14.5377 -3.8949 5.1719 18 1 13.9569 -4.2732 6.0000 19 6 15.9236 -3.9305 5.2231 20 7 16.5300 -4.4255 6.2798 21 14 16.9283 -3.2768 3.7904 22 1 17.2056 -1.8328 3.9984 23 1 18.2111 -4.0200 3.7055 24 1 16.1669 -3.4578 2.5284 25 6 11.8764 -3.8009 5.2395 26 6 10.5056 -3.6991 5.3018 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.6766 1.9562 -0.8901 32 1 1.6767 1.9563 0.8899 33 1 3.1301 1.4425 -0.0005 34 1 1.6054 -1.7198 1.2952 35 1 1.7517 -0.1583 2.1370 36 1 3.9994 0.1675 1.1420 37 1 3.8532 -1.3940 0.3002 38 1 3.6402 -2.5502 2.4839 39 1 3.7865 -0.9883 3.3250 40 1 6.0173 -1.2927 1.6201 41 1 8.2023 -1.9620 2.4741 42 1 7.8035 -3.3646 5.1721 43 1 9.9642 -2.0839 2.3566 44 1 12.4117 -2.2659 2.2640 45 1 17.4990 -4.4508 6.3155 46 1 12.4183 -4.2823 6.0401 47 1 9.9715 -4.0997 6.1507 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000025801933.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:21 Heat of formation + Delta-G solvation = -53.945830 kcal Electronic energy + Delta-G solvation = -24126.792349 eV Core-core repulsion = 20467.533363 eV Total energy + Delta-G solvation = -3659.258987 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.67562 -39.27620 -37.64081 -37.03954 -35.03396 -33.24259 -32.47778 -31.55858 -30.52828 -28.55225 -27.62137 -26.41607 -25.48757 -23.20047 -22.30590 -21.98285 -20.87254 -20.28011 -19.27381 -18.06168 -17.45309 -17.03176 -16.28742 -15.99666 -15.23677 -15.03686 -14.97147 -14.49901 -14.34825 -14.08944 -14.00245 -13.93838 -13.72675 -13.47492 -12.84789 -12.70249 -12.68847 -12.60988 -12.40553 -12.16234 -12.05849 -11.88195 -11.80347 -11.52509 -11.20514 -11.13663 -11.02408 -10.99449 -10.91124 -10.76223 -10.27798 -9.81767 -9.65653 -9.54845 -9.15440 -8.91006 -8.46948 -7.24075 -6.60366 -4.24166 0.99630 2.03445 2.48236 3.11674 3.15543 3.19467 3.28773 3.53776 4.08745 4.28058 4.40683 4.43134 4.46064 4.63207 4.72599 4.77155 4.93977 4.99652 5.04744 5.17628 5.18611 5.21502 5.27724 5.32067 5.42863 5.43687 5.48930 5.52555 5.57759 5.60774 5.70297 5.73010 5.78977 5.93573 5.94559 5.96893 6.02538 6.29070 6.33993 6.45554 6.53340 6.67650 6.92979 7.08987 7.16514 7.41813 7.52056 7.62875 7.84169 8.31530 8.72971 9.33266 10.45939 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.033759 B = 0.001602 C = 0.001539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.212328 B =17477.256685 C =18190.878610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.097 4.097 3 C -0.151 4.151 4 C -0.112 4.112 5 C -0.133 4.133 6 C 0.120 3.880 7 N -0.735 5.735 8 C 0.554 3.446 9 O -0.558 6.558 10 C -0.278 4.278 11 C 0.035 3.965 12 C -0.189 4.189 13 C -0.046 4.046 14 C -0.199 4.199 15 C 0.173 3.827 16 O -0.202 6.202 17 C -0.392 4.392 18 H 0.111 0.889 19 C 0.067 3.933 20 N -0.867 5.867 21 Si 0.907 3.093 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.258 1.258 25 C -0.229 4.229 26 C -0.037 4.037 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.400 0.600 41 H 0.124 0.876 42 H 0.124 0.876 43 H 0.120 0.880 44 H 0.121 0.879 45 H 0.283 0.717 46 H 0.137 0.863 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.565 8.592 -12.235 28.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.116 4.116 3 C -0.208 4.208 4 C -0.150 4.150 5 C -0.171 4.171 6 C -0.004 4.004 7 N -0.386 5.386 8 C 0.345 3.655 9 O -0.439 6.439 10 C -0.299 4.299 11 C 0.015 3.985 12 C -0.190 4.190 13 C -0.064 4.064 14 C -0.219 4.219 15 C 0.119 3.881 16 O -0.105 6.105 17 C -0.467 4.467 18 H 0.128 0.872 19 C -0.139 4.139 20 N -0.503 5.503 21 Si 0.732 3.268 22 H -0.196 1.196 23 H -0.205 1.205 24 H -0.182 1.182 25 C -0.249 4.249 26 C -0.055 4.055 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.234 0.766 41 H 0.141 0.859 42 H 0.142 0.858 43 H 0.138 0.862 44 H 0.139 0.861 45 H 0.093 0.907 46 H 0.155 0.845 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -24.587 8.261 -11.610 28.418 hybrid contribution 0.801 0.358 -0.763 1.163 sum -23.787 8.619 -12.374 28.164 Atomic orbital electron populations 1.21848 0.95222 1.01754 1.01766 1.21119 0.95724 0.96442 0.98291 1.21910 1.01256 0.95904 1.01715 1.21569 0.94383 1.00927 0.98165 1.21868 0.96442 1.01131 0.97640 1.21301 0.80188 1.00727 0.98179 1.45869 1.07457 1.61133 1.24169 1.18421 0.88358 0.77003 0.81689 1.90782 1.70713 1.48855 1.33535 1.22472 0.92154 1.11944 1.03314 1.22303 0.92381 0.88330 0.95496 1.18536 0.91754 1.10438 0.98310 1.20883 0.92900 0.96322 0.96278 1.20142 0.93660 1.07786 1.00267 1.19365 0.83603 0.91920 0.93253 1.83502 1.15305 1.71394 1.40332 1.20881 0.90923 1.39728 0.95179 0.87196 1.24535 0.95755 0.95815 0.97777 1.69614 1.10801 1.42051 1.27803 0.86160 0.79013 0.79269 0.82402 1.19642 1.20511 1.18214 1.21222 0.94299 1.08159 1.01174 1.21047 0.93573 0.94598 0.96315 0.92664 0.92753 0.92681 0.91210 0.92868 0.92664 0.92372 0.91601 0.91573 0.91013 0.91299 0.91759 0.91752 0.76650 0.85873 0.85772 0.86248 0.86127 0.90657 0.84497 0.86511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.19 37.16 0.34 -0.37 16 2 C -0.10 -0.49 2.92 -90.62 -0.26 -0.76 16 3 C -0.15 -0.75 8.95 37.16 0.33 -0.41 16 4 C -0.11 -0.62 4.68 -26.73 -0.13 -0.74 16 5 C -0.13 -0.78 5.08 -26.73 -0.14 -0.92 16 6 C 0.12 1.06 5.67 -4.04 -0.02 1.03 16 7 N -0.73 -7.30 5.55 -61.76 -0.34 -7.64 16 8 C 0.55 7.63 7.74 -13.04 -0.10 7.53 16 9 O -0.56 -9.78 16.23 5.17 0.08 -9.69 16 10 C -0.28 -3.65 9.41 -37.51 -0.35 -4.00 16 11 C 0.03 0.51 9.45 -37.19 -0.35 0.16 16 12 C -0.19 -3.11 5.87 -105.02 -0.62 -3.73 16 13 C -0.05 -0.73 9.40 -39.15 -0.37 -1.10 16 14 C -0.20 -3.69 9.97 -39.47 -0.39 -4.08 16 15 C 0.17 3.78 6.66 -38.88 -0.26 3.52 16 16 O -0.20 -5.06 8.57 0.75 0.01 -5.05 16 17 C -0.39 -10.51 9.94 30.91 0.31 -10.21 16 18 H 0.11 3.00 5.41 -52.49 -0.28 2.72 16 19 C 0.07 1.78 5.49 -17.51 -0.10 1.68 16 20 N -0.87 -23.93 13.96 55.48 0.77 -23.16 16 21 Si 0.91 20.58 28.62 -169.99 -4.86 15.72 16 22 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 23 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.26 -5.87 7.11 56.52 0.40 -5.47 16 25 C -0.23 -4.70 9.14 -39.47 -0.36 -5.06 16 26 C -0.04 -0.65 9.78 -39.14 -0.38 -1.03 16 27 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.25 8.14 -51.92 -0.42 -0.17 16 32 H 0.05 0.28 8.14 -51.94 -0.42 -0.14 16 33 H 0.06 0.28 6.57 -51.93 -0.34 -0.06 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.39 6.56 -51.93 -0.34 0.05 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.40 2.87 8.45 -40.82 -0.34 2.53 16 41 H 0.12 1.34 6.07 -52.48 -0.32 1.02 16 42 H 0.12 1.85 7.52 -52.49 -0.39 1.45 16 43 H 0.12 1.52 6.16 -52.49 -0.32 1.19 16 44 H 0.12 2.04 8.06 -52.49 -0.42 1.61 16 45 H 0.28 7.19 8.31 -40.82 -0.34 6.85 16 46 H 0.14 2.92 5.62 -52.49 -0.29 2.63 16 47 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 389.96 15.07 5.88 5.88 Total: -1.00 -29.95 389.96 -8.59 -38.54 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -7.27 Total: 3.88 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: -2.85 Total: -18.48 kcal Atomic # 7 Polarization: -31.23 SS G_CDS: 0.43 Total: -30.80 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: 0.09 Total: -14.74 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.86 Total: 15.72 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -29.95 -8.59 -38.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025801933.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.403 kcal (2) G-P(sol) polarization free energy of solvation -29.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds