Wall clock time and date at job start Tue Mar 31 2020 13:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47040 * 2 1 4 4 C 1.52999 * 109.46994 * 120.00006 * 2 1 3 5 5 C 1.53005 * 109.47051 * 175.00125 * 4 2 1 6 6 C 1.52999 * 109.47051 * 179.97438 * 5 4 2 7 7 N 1.46495 * 109.46990 * 180.02562 * 6 5 4 8 8 C 1.34775 * 120.00065 * 179.97438 * 7 6 5 9 9 O 1.21726 * 120.00073 * 359.97438 * 8 7 6 10 10 C 1.46258 * 120.00322 * 179.97438 * 8 7 6 11 11 C 1.35015 * 120.00185 * 179.97438 * 10 8 7 12 12 C 1.46966 * 119.99859 * 179.72327 * 11 10 8 13 13 C 1.40020 * 120.10099 * 359.72646 * 12 11 10 14 14 C 1.37601 * 119.89632 * 179.78802 * 13 12 11 15 15 C 1.39173 * 120.10087 * 0.48795 * 14 13 12 16 16 O 1.35568 * 119.90002 * 179.76457 * 15 14 13 17 17 C 1.34779 * 117.00070 * 174.42258 * 16 15 14 18 18 H 1.07996 * 120.00296 * 5.05680 * 17 16 15 19 19 C 1.38728 * 119.99880 * 185.05920 * 17 16 15 20 20 N 1.31508 * 119.99925 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 119.99891 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.46999 * 90.00502 * 21 19 17 23 23 H 1.48502 * 109.46807 * 210.00364 * 21 19 17 24 24 H 1.48497 * 109.47364 * 330.00385 * 21 19 17 25 25 C 1.39182 * 120.20443 * 359.74007 * 15 14 13 26 26 C 1.37597 * 120.10073 * 0.02562 * 25 15 14 27 27 H 1.08997 * 109.47232 * 299.99755 * 1 2 3 28 28 H 1.08998 * 109.47041 * 60.00651 * 1 2 3 29 29 H 1.09003 * 109.46779 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47048 * 239.99948 * 2 1 3 31 31 H 1.09008 * 109.46628 * 299.99658 * 3 2 1 32 32 H 1.08989 * 109.47453 * 59.99782 * 3 2 1 33 33 H 1.09006 * 109.47056 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47600 * 54.99803 * 4 2 1 35 35 H 1.09003 * 109.47246 * 294.99743 * 4 2 1 36 36 H 1.08997 * 109.46792 * 59.99657 * 5 4 2 37 37 H 1.09003 * 109.46783 * 299.99901 * 5 4 2 38 38 H 1.09000 * 109.47095 * 59.99600 * 6 5 4 39 39 H 1.09000 * 109.46745 * 299.99703 * 6 5 4 40 40 H 0.97004 * 120.00076 * 359.97438 * 7 6 5 41 41 H 1.08007 * 119.99439 * 359.72456 * 10 8 7 42 42 H 1.07994 * 120.00134 * 359.72623 * 11 10 8 43 43 H 1.08001 * 120.05478 * 0.02562 * 13 12 11 44 44 H 1.08000 * 119.94685 * 180.22931 * 14 13 12 45 45 H 0.96995 * 120.00201 * 179.97438 * 20 19 17 46 46 H 1.07995 * 119.94818 * 179.97438 * 25 15 14 47 47 H 1.07996 * 120.05582 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.8310 1.1880 6 6 4.0749 -1.5517 2.4375 7 7 5.5349 -1.6563 2.3792 8 6 6.2080 -2.2576 3.3801 9 8 5.6028 -2.7134 4.3328 10 6 7.6657 -2.3625 3.3216 11 6 8.3400 -2.9645 4.3245 12 6 9.8042 -3.0752 4.2628 13 6 10.5015 -2.5624 3.1622 14 6 11.8727 -2.6645 3.1108 15 6 12.5657 -3.2854 4.1457 16 8 13.9163 -3.3880 4.0886 17 6 14.5377 -3.8949 5.1719 18 1 13.9569 -4.2732 6.0000 19 6 15.9236 -3.9305 5.2231 20 7 16.5300 -4.4255 6.2798 21 14 16.9283 -3.2768 3.7904 22 1 17.2056 -1.8328 3.9984 23 1 18.2111 -4.0200 3.7055 24 1 16.1669 -3.4578 2.5284 25 6 11.8764 -3.8009 5.2395 26 6 10.5056 -3.6991 5.3018 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.6766 1.9562 -0.8901 32 1 1.6767 1.9563 0.8899 33 1 3.1301 1.4425 -0.0005 34 1 1.6054 -1.7198 1.2952 35 1 1.7517 -0.1583 2.1370 36 1 3.9994 0.1675 1.1420 37 1 3.8532 -1.3940 0.3002 38 1 3.6402 -2.5502 2.4839 39 1 3.7865 -0.9883 3.3250 40 1 6.0173 -1.2927 1.6201 41 1 8.2023 -1.9620 2.4741 42 1 7.8035 -3.3646 5.1721 43 1 9.9642 -2.0839 2.3566 44 1 12.4117 -2.2659 2.2640 45 1 17.4990 -4.4508 6.3155 46 1 12.4183 -4.2823 6.0401 47 1 9.9715 -4.0997 6.1507 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000025801933.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:19 Heat of formation + Delta-G solvation = -70.556460 kcal Electronic energy + Delta-G solvation = -24127.512640 eV Core-core repulsion = 20467.533363 eV Total energy + Delta-G solvation = -3659.979278 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.00779 -40.61610 -38.63729 -38.10002 -35.87002 -34.76123 -34.19145 -32.26982 -31.99207 -29.89740 -27.99399 -27.61464 -26.83464 -24.38271 -23.77122 -22.71392 -22.05125 -20.83816 -20.53250 -19.64775 -19.14839 -18.20245 -17.10278 -16.81433 -16.57468 -16.37570 -15.90083 -15.77985 -15.61227 -15.48157 -15.07493 -15.05102 -14.52828 -14.36769 -14.29237 -14.22683 -14.04973 -13.42854 -13.28858 -13.18112 -13.06341 -12.72645 -12.65206 -12.58883 -12.56090 -12.35519 -11.99523 -11.93737 -11.59257 -11.42648 -11.34397 -11.30602 -11.15641 -10.94026 -10.67548 -10.06467 -9.91578 -8.73784 -8.53567 -6.25444 -0.27778 0.55283 1.10901 1.32737 1.37570 1.52528 2.26414 2.29846 2.36332 2.80572 3.00717 3.15451 3.78528 3.80080 3.92667 3.97422 4.04671 4.06044 4.23441 4.26834 4.33299 4.36840 4.46753 4.55013 4.63415 4.70273 4.75196 4.84041 4.84392 4.90623 4.96262 5.05253 5.12092 5.12517 5.21609 5.24423 5.26938 5.28509 5.36065 5.39624 5.50037 5.54117 5.57035 5.59719 5.70606 5.80188 5.83675 6.14658 6.62803 6.79605 7.30158 7.50775 8.57329 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.033759 B = 0.001602 C = 0.001539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.212328 B =17477.256685 C =18190.878610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.095 4.095 3 C -0.151 4.151 4 C -0.112 4.112 5 C -0.121 4.121 6 C 0.118 3.882 7 N -0.715 5.715 8 C 0.545 3.455 9 O -0.599 6.599 10 C -0.237 4.237 11 C 0.009 3.991 12 C -0.160 4.160 13 C -0.040 4.040 14 C -0.193 4.193 15 C 0.135 3.865 16 O -0.233 6.233 17 C -0.405 4.405 18 H 0.083 0.917 19 C 0.013 3.987 20 N -0.917 5.917 21 Si 0.971 3.029 22 H -0.265 1.265 23 H -0.268 1.268 24 H -0.259 1.259 25 C -0.243 4.243 26 C -0.047 4.047 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.417 0.583 41 H 0.159 0.841 42 H 0.120 0.880 43 H 0.168 0.832 44 H 0.140 0.860 45 H 0.286 0.714 46 H 0.113 0.887 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.359 10.561 -15.601 33.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.114 4.114 3 C -0.208 4.208 4 C -0.150 4.150 5 C -0.159 4.159 6 C -0.005 4.005 7 N -0.366 5.366 8 C 0.336 3.664 9 O -0.482 6.482 10 C -0.258 4.258 11 C -0.011 4.011 12 C -0.161 4.161 13 C -0.057 4.057 14 C -0.212 4.212 15 C 0.085 3.915 16 O -0.139 6.139 17 C -0.481 4.481 18 H 0.101 0.899 19 C -0.186 4.186 20 N -0.557 5.557 21 Si 0.793 3.207 22 H -0.190 1.190 23 H -0.193 1.193 24 H -0.183 1.183 25 C -0.262 4.262 26 C -0.065 4.065 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.254 0.746 41 H 0.176 0.824 42 H 0.138 0.862 43 H 0.185 0.815 44 H 0.158 0.842 45 H 0.096 0.904 46 H 0.131 0.869 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -27.449 10.261 -15.027 32.932 hybrid contribution 0.976 -0.145 0.188 1.004 sum -26.473 10.116 -14.839 31.990 Atomic orbital electron populations 1.21857 0.95199 1.01799 1.01847 1.21101 0.95770 0.96478 0.98022 1.21915 1.01449 0.95751 1.01700 1.21556 0.94202 1.00875 0.98338 1.21790 0.96458 1.01311 0.96324 1.21389 0.79337 1.00456 0.99367 1.45780 1.08078 1.59211 1.23530 1.18628 0.88745 0.77126 0.81896 1.90786 1.71494 1.50630 1.35339 1.22813 0.91957 1.08168 1.02845 1.22165 0.91208 0.90929 0.96842 1.18825 0.92720 1.07286 0.97266 1.21362 0.91926 0.95365 0.97065 1.20500 0.94762 1.06399 0.99537 1.19950 0.83037 0.93538 0.94980 1.83458 1.16700 1.74121 1.39641 1.20761 0.91340 1.40416 0.95558 0.89909 1.25325 0.96663 0.96297 1.00331 1.69702 1.11179 1.44928 1.29887 0.85207 0.77622 0.78894 0.78968 1.18956 1.19275 1.18334 1.21218 0.95643 1.08671 1.00702 1.21288 0.92386 0.94984 0.97827 0.92872 0.92423 0.92679 0.90906 0.92641 0.92994 0.92026 0.91807 0.91963 0.90051 0.90226 0.92764 0.92808 0.74553 0.82405 0.86206 0.81483 0.84239 0.90381 0.86932 0.84471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.19 71.98 0.66 -0.50 16 2 C -0.10 -0.73 2.92 -10.79 -0.03 -0.76 16 3 C -0.15 -1.12 8.95 71.98 0.64 -0.48 16 4 C -0.11 -0.96 4.68 30.60 0.14 -0.82 16 5 C -0.12 -1.01 5.08 30.60 0.16 -0.85 16 6 C 0.12 1.74 5.67 86.38 0.49 2.23 16 7 N -0.71 -11.20 5.55 -467.50 -2.60 -13.80 16 8 C 0.54 12.96 7.74 86.33 0.67 13.63 16 9 O -0.60 -19.67 16.23 -4.43 -0.07 -19.74 16 10 C -0.24 -5.01 9.41 23.61 0.22 -4.79 16 11 C 0.01 0.22 9.45 23.82 0.23 0.45 16 12 C -0.16 -4.75 5.87 -20.12 -0.12 -4.87 16 13 C -0.04 -1.09 9.40 22.55 0.21 -0.88 16 14 C -0.19 -6.70 9.97 22.34 0.22 -6.47 16 15 C 0.14 6.02 6.66 22.72 0.15 6.17 16 16 O -0.23 -12.11 8.57 -20.22 -0.17 -12.29 16 17 C -0.40 -23.16 9.94 67.94 0.68 -22.48 16 18 H 0.08 4.98 5.41 -2.91 -0.02 4.97 16 19 C 0.01 0.75 5.49 84.86 0.47 1.22 16 20 N -0.92 -53.57 13.96 21.63 0.30 -53.27 16 21 Si 0.97 43.73 28.62 68.60 1.96 45.70 16 22 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 23 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 24 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 25 C -0.24 -10.35 9.14 22.34 0.20 -10.14 16 26 C -0.05 -1.61 9.78 22.55 0.22 -1.38 16 27 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 31 H 0.05 0.39 8.14 -2.38 -0.02 0.37 16 32 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.06 0.41 6.57 -2.38 -0.02 0.39 16 34 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.08 0.56 6.56 -2.39 -0.02 0.55 16 37 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.42 3.70 8.45 -92.71 -0.78 2.92 16 41 H 0.16 2.23 6.07 -2.91 -0.02 2.22 16 42 H 0.12 3.29 7.52 -2.91 -0.02 3.27 16 43 H 0.17 3.02 6.16 -2.91 -0.02 3.00 16 44 H 0.14 4.29 8.06 -2.91 -0.02 4.26 16 45 H 0.29 15.31 8.31 -92.71 -0.77 14.54 16 46 H 0.11 5.29 5.62 -2.91 -0.02 5.27 16 47 H 0.14 4.05 8.06 -2.91 -0.02 4.02 16 Total: -1.00 -69.75 389.96 4.82 -64.93 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 0.19 Total: 19.20 kcal Atomic # 6 Polarization: -35.95 SS G_CDS: 5.21 Total: -30.74 kcal Atomic # 7 Polarization: -64.77 SS G_CDS: -2.29 Total: -67.06 kcal Atomic # 8 Polarization: -31.78 SS G_CDS: -0.25 Total: -32.03 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 1.96 Total: 45.70 kcal Total: -69.75 4.82 -64.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025801933.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.628 kcal (2) G-P(sol) polarization free energy of solvation -69.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds