Wall clock time and date at job start Tue Mar 31 2020 13:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47253 * 2 1 4 4 C 1.52997 * 109.47197 * 240.00054 * 2 1 3 5 5 C 1.53005 * 109.46988 * 119.99910 * 2 1 3 6 6 C 1.52999 * 109.47051 * 60.00363 * 5 2 1 7 7 N 1.46495 * 109.46990 * 180.02562 * 6 5 2 8 8 C 1.34775 * 120.00065 * 179.97438 * 7 6 5 9 9 O 1.21726 * 120.00073 * 359.97438 * 8 7 6 10 10 C 1.46258 * 120.00322 * 179.97438 * 8 7 6 11 11 C 1.35015 * 120.00185 * 179.97438 * 10 8 7 12 12 C 1.46966 * 119.99859 * 179.72327 * 11 10 8 13 13 C 1.40020 * 120.10099 * 359.72646 * 12 11 10 14 14 C 1.37601 * 119.89632 * 179.78802 * 13 12 11 15 15 C 1.39173 * 120.10087 * 0.48795 * 14 13 12 16 16 O 1.35568 * 119.90002 * 179.76457 * 15 14 13 17 17 C 1.34779 * 117.00070 * 174.42258 * 16 15 14 18 18 H 1.07996 * 120.00296 * 5.05680 * 17 16 15 19 19 C 1.38728 * 119.99880 * 185.05920 * 17 16 15 20 20 N 1.31504 * 119.99788 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99923 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47005 * 59.99702 * 21 19 17 23 23 H 1.48497 * 109.47002 * 179.97438 * 21 19 17 24 24 H 1.48492 * 109.47212 * 299.99834 * 21 19 17 25 25 C 1.39182 * 120.20443 * 359.74007 * 15 14 13 26 26 C 1.37597 * 120.10073 * 0.02562 * 25 15 14 27 27 H 1.08995 * 109.47559 * 299.99921 * 1 2 3 28 28 H 1.09000 * 109.47367 * 60.00056 * 1 2 3 29 29 H 1.09008 * 109.46975 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47229 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.46889 * 300.00237 * 3 2 1 32 32 H 1.09005 * 109.47135 * 59.99239 * 3 2 1 33 33 H 1.09008 * 109.47168 * 299.99894 * 4 2 1 34 34 H 1.08999 * 109.47510 * 59.99971 * 4 2 1 35 35 H 1.09000 * 109.47265 * 180.02562 * 4 2 1 36 36 H 1.08997 * 109.46792 * 300.00020 * 5 2 1 37 37 H 1.09003 * 109.46783 * 180.02562 * 5 2 1 38 38 H 1.09000 * 109.47095 * 59.99600 * 6 5 2 39 39 H 1.09000 * 109.46745 * 299.99703 * 6 5 2 40 40 H 0.97004 * 120.00076 * 359.97438 * 7 6 5 41 41 H 1.08007 * 119.99439 * 359.72456 * 10 8 7 42 42 H 1.07994 * 120.00134 * 359.72623 * 11 10 8 43 43 H 1.08001 * 120.05478 * 0.02562 * 13 12 11 44 44 H 1.08000 * 119.94685 * 180.22931 * 14 13 12 45 45 H 0.97004 * 119.99826 * 180.02562 * 20 19 17 46 46 H 1.07995 * 119.94818 * 179.97438 * 25 15 14 47 47 H 1.07996 * 120.05582 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7213 1.2493 6 6 1.5300 -2.1638 1.2493 7 7 2.0178 -2.8541 2.4457 8 6 1.6917 -4.1443 2.6593 9 8 0.9916 -4.7358 1.8583 10 6 2.1792 -4.8338 3.8535 11 6 1.8521 -6.1261 4.0678 12 6 2.3469 -6.8206 5.2647 13 6 3.1624 -6.1458 6.1814 14 6 3.6198 -6.7989 7.3028 15 6 3.2814 -8.1310 7.5215 16 8 3.7382 -8.7719 8.6254 17 6 3.2826 -10.0221 8.8396 18 1 2.6502 -10.4996 8.1058 19 6 3.6259 -10.6957 10.0028 20 7 4.3963 -10.1145 10.8961 21 14 2.9939 -12.4282 10.3000 22 1 3.4702 -13.3220 9.2138 23 1 3.5006 -12.9228 11.6053 24 1 1.5091 -12.4174 10.3167 25 6 2.4750 -8.8072 6.6107 26 6 2.0090 -8.1609 5.4889 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1299 1.4425 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6766 -1.7490 -1.2492 34 1 1.6767 -0.2074 -2.1392 35 1 3.1300 -0.7216 -1.2490 36 1 1.6766 -0.2074 2.1392 37 1 3.1300 -0.7208 1.2495 38 1 1.8933 -2.6775 0.3592 39 1 0.4400 -2.1637 1.2492 40 1 2.5755 -2.3827 3.0843 41 1 2.8041 -4.3103 4.5620 42 1 1.2269 -6.6494 3.3596 43 1 3.4289 -5.1133 6.0104 44 1 4.2458 -6.2781 8.0123 45 1 4.6367 -10.5856 11.7092 46 1 2.2152 -9.8410 6.7843 47 1 1.3837 -8.6864 4.7824 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000027363059.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:26 Heat of formation + Delta-G solvation = -50.280910 kcal Electronic energy + Delta-G solvation = -24517.111462 eV Core-core repulsion = 20858.011398 eV Total energy + Delta-G solvation = -3659.100064 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.71065 -39.15068 -38.24914 -36.87797 -34.55017 -33.19021 -32.29417 -30.43256 -29.80409 -28.01779 -27.67110 -27.65911 -25.69406 -24.15175 -22.58013 -22.08036 -20.76453 -19.55884 -18.83415 -18.10378 -17.13492 -16.96139 -16.19025 -15.74297 -15.00823 -14.85666 -14.71290 -14.68594 -14.37212 -14.23904 -13.84804 -13.75617 -13.69826 -13.24664 -13.02757 -12.80244 -12.58867 -12.35303 -12.12820 -12.07281 -11.92413 -11.78770 -11.71737 -11.61614 -11.11538 -11.10524 -11.06403 -10.97190 -10.87437 -10.70050 -10.54301 -9.75604 -9.59555 -9.49751 -9.07828 -8.83624 -8.37930 -7.10891 -6.64830 -4.19811 1.08729 2.13806 2.57396 3.04267 3.05988 3.08263 3.25091 3.60880 3.82592 4.33703 4.39077 4.41424 4.51476 4.88916 4.90979 4.92666 5.04560 5.06014 5.11172 5.26238 5.28232 5.29082 5.30425 5.40389 5.51960 5.53934 5.58117 5.61253 5.65591 5.67542 5.69527 5.75743 5.86180 6.00834 6.02298 6.02356 6.12613 6.39212 6.47932 6.51402 6.61886 6.79671 6.92123 7.13354 7.24100 7.28629 7.58093 7.64315 7.80345 8.37453 8.79818 9.46803 10.51688 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.043834 B = 0.001654 C = 0.001613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.620771 B =16925.954030 C =17354.562802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.066 4.066 3 C -0.141 4.141 4 C -0.147 4.147 5 C -0.122 4.122 6 C 0.116 3.884 7 N -0.735 5.735 8 C 0.554 3.446 9 O -0.560 6.560 10 C -0.283 4.283 11 C 0.037 3.963 12 C -0.199 4.199 13 C -0.043 4.043 14 C -0.200 4.200 15 C 0.167 3.833 16 O -0.162 6.162 17 C -0.394 4.394 18 H 0.097 0.903 19 C 0.042 3.958 20 N -0.852 5.852 21 Si 0.945 3.055 22 H -0.268 1.268 23 H -0.276 1.276 24 H -0.268 1.268 25 C -0.242 4.242 26 C -0.035 4.035 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.399 0.601 41 H 0.123 0.877 42 H 0.123 0.877 43 H 0.118 0.882 44 H 0.121 0.879 45 H 0.274 0.726 46 H 0.131 0.869 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.009 17.725 -17.147 24.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.066 4.066 3 C -0.198 4.198 4 C -0.205 4.205 5 C -0.160 4.160 6 C -0.007 4.007 7 N -0.387 5.387 8 C 0.346 3.654 9 O -0.441 6.441 10 C -0.304 4.304 11 C 0.018 3.982 12 C -0.200 4.200 13 C -0.061 4.061 14 C -0.219 4.219 15 C 0.110 3.890 16 O -0.063 6.063 17 C -0.470 4.470 18 H 0.114 0.886 19 C -0.164 4.164 20 N -0.485 5.485 21 Si 0.769 3.231 22 H -0.193 1.193 23 H -0.201 1.201 24 H -0.192 1.192 25 C -0.261 4.261 26 C -0.053 4.053 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.233 0.767 41 H 0.141 0.859 42 H 0.140 0.860 43 H 0.136 0.864 44 H 0.139 0.861 45 H 0.084 0.916 46 H 0.149 0.851 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -4.226 17.308 -17.273 24.815 hybrid contribution 0.012 -0.579 0.498 0.764 sum -4.213 16.729 -16.775 24.063 Atomic orbital electron populations 1.21975 0.94387 1.02307 1.01798 1.20470 0.95886 0.95412 0.94842 1.21869 1.00998 0.95138 1.01834 1.21976 1.01076 1.00653 0.96762 1.21860 1.01206 0.94573 0.98319 1.21460 0.99480 0.91667 0.88124 1.45885 1.54691 1.12494 1.25585 1.18422 0.79561 0.81124 0.86276 1.90771 1.39109 1.66381 1.47850 1.22445 1.10804 0.97140 0.99990 1.22282 0.90236 0.92988 0.92737 1.18469 1.08337 0.95099 0.98058 1.20880 0.94604 0.98268 0.92384 1.20149 1.08195 0.92938 1.00607 1.19613 0.90625 0.91422 0.87329 1.83901 1.58030 1.28486 1.35908 1.21431 1.31803 0.88100 1.05622 0.88589 1.25391 0.96237 1.00402 0.94385 1.70003 1.31904 1.37871 1.08696 0.85715 0.79279 0.79777 0.78368 1.19258 1.20083 1.19246 1.21100 1.06124 1.01726 0.97192 1.20992 0.95830 0.92992 0.95535 0.92559 0.92625 0.92054 0.92603 0.92549 0.92607 0.92058 0.92619 0.92564 0.91205 0.91206 0.91464 0.91467 0.76701 0.85920 0.85957 0.86419 0.86138 0.91553 0.85124 0.86809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 8.12 37.16 0.30 -0.62 16 2 C -0.07 -0.40 0.80 -154.51 -0.12 -0.52 16 3 C -0.14 -0.74 8.47 37.16 0.31 -0.43 16 4 C -0.15 -0.92 8.12 37.16 0.30 -0.62 16 5 C -0.12 -0.79 4.38 -26.73 -0.12 -0.91 16 6 C 0.12 1.08 4.97 -4.04 -0.02 1.06 16 7 N -0.74 -7.69 5.55 -61.76 -0.34 -8.03 16 8 C 0.55 7.91 7.74 -13.04 -0.10 7.81 16 9 O -0.56 -10.00 16.23 5.17 0.08 -9.92 16 10 C -0.28 -3.91 9.41 -37.51 -0.35 -4.26 16 11 C 0.04 0.58 9.45 -37.19 -0.35 0.22 16 12 C -0.20 -3.41 5.87 -105.02 -0.62 -4.03 16 13 C -0.04 -0.74 9.40 -39.15 -0.37 -1.11 16 14 C -0.20 -4.00 9.97 -39.47 -0.39 -4.39 16 15 C 0.17 3.84 6.66 -38.88 -0.26 3.58 16 16 O -0.16 -4.41 9.74 0.75 0.01 -4.40 16 17 C -0.39 -10.48 9.48 30.91 0.29 -10.19 16 18 H 0.10 2.34 5.18 -52.49 -0.27 2.07 16 19 C 0.04 1.10 5.49 -17.51 -0.10 1.01 16 20 N -0.85 -23.83 13.67 55.48 0.76 -23.07 16 21 Si 0.94 19.51 29.55 -169.99 -5.02 14.49 16 22 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 23 H -0.28 -5.58 7.11 56.52 0.40 -5.17 16 24 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 25 C -0.24 -5.03 9.14 -39.47 -0.36 -5.39 16 26 C -0.04 -0.63 9.78 -39.14 -0.38 -1.01 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.43 6.43 -51.92 -0.33 0.10 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.43 6.43 -51.92 -0.33 0.10 16 34 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.69 6.43 -51.93 -0.33 0.36 16 39 H 0.07 0.69 6.43 -51.93 -0.33 0.36 16 40 H 0.40 3.12 8.45 -40.82 -0.34 2.77 16 41 H 0.12 1.44 6.07 -52.48 -0.32 1.12 16 42 H 0.12 1.88 7.52 -52.49 -0.39 1.49 16 43 H 0.12 1.63 6.16 -52.49 -0.32 1.31 16 44 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 45 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 46 H 0.13 2.68 5.62 -52.49 -0.29 2.38 16 47 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 LS Contribution 385.75 15.07 5.81 5.81 Total: -1.00 -30.77 385.75 -8.10 -38.88 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -7.07 Total: 6.04 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: -2.33 Total: -19.79 kcal Atomic # 7 Polarization: -31.52 SS G_CDS: 0.42 Total: -31.10 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: 0.09 Total: -14.32 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.49 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.77 -8.10 -38.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027363059.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.405 kcal (2) G-P(sol) polarization free energy of solvation -30.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds