Wall clock time and date at job start Tue Mar 31 2020 13:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47253 * 2 1 4 4 C 1.52997 * 109.47197 * 240.00054 * 2 1 3 5 5 C 1.53005 * 109.46988 * 119.99910 * 2 1 3 6 6 C 1.52999 * 109.47051 * 60.00363 * 5 2 1 7 7 N 1.46495 * 109.46990 * 180.02562 * 6 5 2 8 8 C 1.34775 * 120.00065 * 179.97438 * 7 6 5 9 9 O 1.21726 * 120.00073 * 359.97438 * 8 7 6 10 10 C 1.46258 * 120.00322 * 179.97438 * 8 7 6 11 11 C 1.35015 * 120.00185 * 179.97438 * 10 8 7 12 12 C 1.46966 * 119.99859 * 179.72327 * 11 10 8 13 13 C 1.40020 * 120.10099 * 359.72646 * 12 11 10 14 14 C 1.37601 * 119.89632 * 179.78802 * 13 12 11 15 15 C 1.39173 * 120.10087 * 0.48795 * 14 13 12 16 16 O 1.35568 * 119.90002 * 179.76457 * 15 14 13 17 17 C 1.34779 * 117.00070 * 174.42258 * 16 15 14 18 18 H 1.07996 * 120.00296 * 5.05680 * 17 16 15 19 19 C 1.38728 * 119.99880 * 185.05920 * 17 16 15 20 20 N 1.31504 * 119.99788 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99923 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47005 * 59.99702 * 21 19 17 23 23 H 1.48497 * 109.47002 * 179.97438 * 21 19 17 24 24 H 1.48492 * 109.47212 * 299.99834 * 21 19 17 25 25 C 1.39182 * 120.20443 * 359.74007 * 15 14 13 26 26 C 1.37597 * 120.10073 * 0.02562 * 25 15 14 27 27 H 1.08995 * 109.47559 * 299.99921 * 1 2 3 28 28 H 1.09000 * 109.47367 * 60.00056 * 1 2 3 29 29 H 1.09008 * 109.46975 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47229 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.46889 * 300.00237 * 3 2 1 32 32 H 1.09005 * 109.47135 * 59.99239 * 3 2 1 33 33 H 1.09008 * 109.47168 * 299.99894 * 4 2 1 34 34 H 1.08999 * 109.47510 * 59.99971 * 4 2 1 35 35 H 1.09000 * 109.47265 * 180.02562 * 4 2 1 36 36 H 1.08997 * 109.46792 * 300.00020 * 5 2 1 37 37 H 1.09003 * 109.46783 * 180.02562 * 5 2 1 38 38 H 1.09000 * 109.47095 * 59.99600 * 6 5 2 39 39 H 1.09000 * 109.46745 * 299.99703 * 6 5 2 40 40 H 0.97004 * 120.00076 * 359.97438 * 7 6 5 41 41 H 1.08007 * 119.99439 * 359.72456 * 10 8 7 42 42 H 1.07994 * 120.00134 * 359.72623 * 11 10 8 43 43 H 1.08001 * 120.05478 * 0.02562 * 13 12 11 44 44 H 1.08000 * 119.94685 * 180.22931 * 14 13 12 45 45 H 0.97004 * 119.99826 * 180.02562 * 20 19 17 46 46 H 1.07995 * 119.94818 * 179.97438 * 25 15 14 47 47 H 1.07996 * 120.05582 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7213 1.2493 6 6 1.5300 -2.1638 1.2493 7 7 2.0178 -2.8541 2.4457 8 6 1.6917 -4.1443 2.6593 9 8 0.9916 -4.7358 1.8583 10 6 2.1792 -4.8338 3.8535 11 6 1.8521 -6.1261 4.0678 12 6 2.3469 -6.8206 5.2647 13 6 3.1624 -6.1458 6.1814 14 6 3.6198 -6.7989 7.3028 15 6 3.2814 -8.1310 7.5215 16 8 3.7382 -8.7719 8.6254 17 6 3.2826 -10.0221 8.8396 18 1 2.6502 -10.4996 8.1058 19 6 3.6259 -10.6957 10.0028 20 7 4.3963 -10.1145 10.8961 21 14 2.9939 -12.4282 10.3000 22 1 3.4702 -13.3220 9.2138 23 1 3.5006 -12.9228 11.6053 24 1 1.5091 -12.4174 10.3167 25 6 2.4750 -8.8072 6.6107 26 6 2.0090 -8.1609 5.4889 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1299 1.4425 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6766 -1.7490 -1.2492 34 1 1.6767 -0.2074 -2.1392 35 1 3.1300 -0.7216 -1.2490 36 1 1.6766 -0.2074 2.1392 37 1 3.1300 -0.7208 1.2495 38 1 1.8933 -2.6775 0.3592 39 1 0.4400 -2.1637 1.2492 40 1 2.5755 -2.3827 3.0843 41 1 2.8041 -4.3103 4.5620 42 1 1.2269 -6.6494 3.3596 43 1 3.4289 -5.1133 6.0104 44 1 4.2458 -6.2781 8.0123 45 1 4.6367 -10.5856 11.7092 46 1 2.2152 -9.8410 6.7843 47 1 1.3837 -8.6864 4.7824 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000027363059.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:25 Heat of formation + Delta-G solvation = -68.084116 kcal Electronic energy + Delta-G solvation = -24517.883467 eV Core-core repulsion = 20858.011398 eV Total energy + Delta-G solvation = -3659.872069 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.93156 -40.62809 -38.94581 -38.44630 -35.50384 -34.72955 -33.98733 -31.96680 -30.72801 -29.30972 -28.15495 -28.12863 -27.49344 -25.20901 -23.85997 -23.42823 -22.03754 -20.77770 -19.88273 -19.35067 -18.83144 -18.14476 -17.16100 -16.54397 -16.46524 -16.35958 -15.99722 -15.61762 -15.41470 -15.40183 -15.26511 -14.87035 -14.60792 -14.58956 -14.18831 -14.10238 -13.59337 -13.33878 -13.31696 -13.15530 -12.88447 -12.67778 -12.65907 -12.55557 -12.53392 -12.23402 -12.23166 -12.14187 -11.64315 -11.48051 -11.40265 -11.21400 -11.10490 -10.92652 -10.57627 -10.01534 -9.88941 -8.67471 -8.51751 -6.18016 -0.23942 0.58822 1.14363 1.36050 1.47558 1.51759 2.15797 2.30971 2.38257 2.86855 3.18185 3.42865 3.77109 3.81213 3.89737 3.93908 3.97381 4.09060 4.29575 4.30027 4.34817 4.36827 4.48513 4.58803 4.65908 4.70466 4.79180 4.82372 4.94546 4.94999 5.03005 5.04344 5.04906 5.11866 5.12859 5.19992 5.22426 5.29025 5.33884 5.40955 5.49533 5.51299 5.55754 5.59901 5.64228 5.81894 5.97455 6.10865 6.63183 6.92435 7.30795 7.69438 8.69963 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.043834 B = 0.001654 C = 0.001613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.620771 B =16925.954030 C =17354.562802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.065 4.065 3 C -0.139 4.139 4 C -0.148 4.148 5 C -0.113 4.113 6 C 0.115 3.885 7 N -0.716 5.716 8 C 0.547 3.453 9 O -0.598 6.598 10 C -0.245 4.245 11 C 0.014 3.986 12 C -0.170 4.170 13 C -0.037 4.037 14 C -0.207 4.207 15 C 0.129 3.871 16 O -0.219 6.219 17 C -0.419 4.419 18 H 0.105 0.895 19 C -0.017 4.017 20 N -0.913 5.913 21 Si 1.018 2.982 22 H -0.257 1.257 23 H -0.271 1.271 24 H -0.257 1.257 25 C -0.249 4.249 26 C -0.041 4.041 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.048 0.952 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.048 0.952 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.416 0.584 41 H 0.153 0.847 42 H 0.123 0.877 43 H 0.161 0.839 44 H 0.123 0.877 45 H 0.275 0.725 46 H 0.125 0.875 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.707 20.138 -19.562 28.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.065 4.065 3 C -0.196 4.196 4 C -0.205 4.205 5 C -0.151 4.151 6 C -0.008 4.008 7 N -0.367 5.367 8 C 0.338 3.662 9 O -0.482 6.482 10 C -0.265 4.265 11 C -0.006 4.006 12 C -0.171 4.171 13 C -0.055 4.055 14 C -0.226 4.226 15 C 0.077 3.923 16 O -0.124 6.124 17 C -0.495 4.495 18 H 0.123 0.877 19 C -0.216 4.216 20 N -0.550 5.550 21 Si 0.837 3.163 22 H -0.181 1.181 23 H -0.196 1.196 24 H -0.182 1.182 25 C -0.268 4.268 26 C -0.059 4.059 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.253 0.747 41 H 0.171 0.829 42 H 0.141 0.859 43 H 0.178 0.822 44 H 0.141 0.859 45 H 0.084 0.916 46 H 0.142 0.858 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.927 19.798 -19.745 28.392 hybrid contribution 0.102 -0.845 0.737 1.126 sum -4.825 18.953 -19.009 27.273 Atomic orbital electron populations 1.21974 0.94685 1.01607 1.02212 1.20473 0.95633 0.95973 0.94453 1.21842 1.01235 0.94314 1.02201 1.21975 1.01261 1.00015 0.97225 1.21815 1.01731 0.92540 0.98973 1.21540 0.98981 0.93152 0.87123 1.45806 1.53555 1.11346 1.26006 1.18580 0.79398 0.82179 0.86061 1.90774 1.40814 1.67497 1.49068 1.22785 1.08078 0.96363 0.99313 1.22165 0.92078 0.93854 0.92511 1.18784 1.05865 0.94632 0.97846 1.21290 0.93443 0.99972 0.90812 1.20426 1.08282 0.92061 1.01821 1.20195 0.92022 0.92850 0.87232 1.83882 1.60959 1.29234 1.38369 1.21864 1.32525 0.88663 1.06399 0.87744 1.26600 0.96359 1.04822 0.93837 1.70141 1.34990 1.40080 1.09750 0.84653 0.78970 0.74212 0.78468 1.18132 1.19566 1.18173 1.21202 1.06061 1.01721 0.97850 1.21317 0.95889 0.93671 0.95030 0.92239 0.92190 0.93268 0.92201 0.92290 0.92210 0.93270 0.92184 0.92236 0.90203 0.90192 0.92436 0.92451 0.74719 0.82933 0.85892 0.82166 0.85869 0.91595 0.85758 0.83868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 8.12 71.98 0.58 -0.99 16 2 C -0.06 -0.62 0.80 -52.18 -0.04 -0.67 16 3 C -0.14 -1.07 8.47 71.98 0.61 -0.46 16 4 C -0.15 -1.57 8.12 71.98 0.58 -0.99 16 5 C -0.11 -1.11 4.38 30.60 0.13 -0.97 16 6 C 0.12 1.85 4.97 86.38 0.43 2.27 16 7 N -0.72 -12.26 5.55 -467.50 -2.60 -14.86 16 8 C 0.55 13.66 7.74 86.33 0.67 14.33 16 9 O -0.60 -19.98 16.23 -4.43 -0.07 -20.06 16 10 C -0.24 -5.60 9.41 23.61 0.22 -5.38 16 11 C 0.01 0.37 9.45 23.82 0.23 0.60 16 12 C -0.17 -5.32 5.87 -20.12 -0.12 -5.44 16 13 C -0.04 -1.17 9.40 22.55 0.21 -0.95 16 14 C -0.21 -8.22 9.97 22.34 0.22 -7.99 16 15 C 0.13 6.16 6.66 22.72 0.15 6.31 16 16 O -0.22 -12.72 9.74 -20.22 -0.20 -12.92 16 17 C -0.42 -23.60 9.48 67.94 0.64 -22.96 16 18 H 0.11 5.37 5.18 -2.91 -0.02 5.36 16 19 C -0.02 -0.95 5.49 84.86 0.47 -0.48 16 20 N -0.91 -54.28 13.67 21.62 0.30 -53.99 16 21 Si 1.02 41.47 29.55 68.60 2.03 43.50 16 22 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 23 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 24 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 25 C -0.25 -10.49 9.14 22.34 0.20 -10.28 16 26 C -0.04 -1.40 9.78 22.55 0.22 -1.18 16 27 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.05 0.64 6.43 -2.38 -0.02 0.63 16 30 H 0.06 0.42 8.14 -2.39 -0.02 0.41 16 31 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.06 0.42 8.14 -2.38 -0.02 0.41 16 33 H 0.05 0.64 6.43 -2.38 -0.02 0.62 16 34 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.06 1.07 6.43 -2.39 -0.02 1.06 16 39 H 0.06 1.07 6.43 -2.39 -0.02 1.06 16 40 H 0.42 4.45 8.45 -92.71 -0.78 3.67 16 41 H 0.15 2.58 6.07 -2.91 -0.02 2.56 16 42 H 0.12 3.41 7.52 -2.91 -0.02 3.39 16 43 H 0.16 3.56 6.16 -2.91 -0.02 3.54 16 44 H 0.12 4.73 8.06 -2.91 -0.02 4.71 16 45 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 46 H 0.12 5.29 5.62 -2.91 -0.02 5.27 16 47 H 0.14 4.00 8.06 -2.91 -0.02 3.98 16 Total: -1.00 -72.04 385.75 5.07 -66.97 By element: Atomic # 1 Polarization: 26.40 SS G_CDS: 0.19 Total: 26.59 kcal Atomic # 6 Polarization: -40.66 SS G_CDS: 5.42 Total: -35.24 kcal Atomic # 7 Polarization: -66.54 SS G_CDS: -2.30 Total: -68.84 kcal Atomic # 8 Polarization: -32.70 SS G_CDS: -0.27 Total: -32.97 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Total: -72.04 5.07 -66.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027363059.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.117 kcal (2) G-P(sol) polarization free energy of solvation -72.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds