Wall clock time and date at job start Tue Mar 31 2020 13:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47073 * 2 1 4 4 C 1.53000 * 109.47320 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46962 * 59.99953 * 4 3 2 6 6 C 1.53004 * 109.47059 * 300.00267 * 4 3 2 7 7 N 1.46500 * 109.47274 * 180.02562 * 4 3 2 8 8 C 1.34776 * 119.99786 * 180.02562 * 7 4 3 9 9 O 1.21722 * 120.00523 * 359.97438 * 8 7 4 10 10 C 1.46261 * 119.99810 * 180.27920 * 8 7 4 11 11 C 1.35019 * 120.00169 * 179.72391 * 10 8 7 12 12 C 1.46959 * 120.00209 * 179.97438 * 11 10 8 13 13 C 1.40017 * 120.10027 * 359.71653 * 12 11 10 14 14 C 1.37600 * 119.89871 * 179.76963 * 13 12 11 15 15 C 1.39173 * 120.09945 * 0.50997 * 14 13 12 16 16 O 1.35570 * 119.89967 * 179.76472 * 15 14 13 17 17 C 1.34788 * 117.00091 * 174.42353 * 16 15 14 18 18 H 1.07991 * 119.99907 * 5.05912 * 17 16 15 19 19 C 1.38714 * 119.99689 * 185.05654 * 17 16 15 20 20 N 1.31507 * 120.00463 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99779 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47342 * 59.99861 * 21 19 17 23 23 H 1.48499 * 109.47262 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46907 * 299.99985 * 21 19 17 25 25 C 1.39180 * 120.20294 * 359.74773 * 15 14 13 26 26 C 1.37600 * 120.10236 * 359.97438 * 25 15 14 27 27 H 1.09007 * 109.47002 * 299.99722 * 1 2 3 28 28 H 1.09000 * 109.47582 * 59.99647 * 1 2 3 29 29 H 1.09003 * 109.47432 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47146 * 239.99995 * 2 1 3 31 31 H 1.08995 * 109.47321 * 119.99991 * 2 1 3 32 32 H 1.09007 * 109.46980 * 60.00264 * 3 2 1 33 33 H 1.09001 * 109.47683 * 300.00352 * 3 2 1 34 34 H 1.08994 * 109.47179 * 179.97438 * 5 4 3 35 35 H 1.08994 * 109.47523 * 300.00510 * 5 4 3 36 36 H 1.09009 * 109.46895 * 60.00538 * 5 4 3 37 37 H 1.08999 * 109.46924 * 299.99713 * 6 4 3 38 38 H 1.08994 * 109.46793 * 59.99878 * 6 4 3 39 39 H 1.09008 * 109.46843 * 179.97438 * 6 4 3 40 40 H 0.96999 * 120.00112 * 359.97438 * 7 4 3 41 41 H 1.08000 * 119.99984 * 359.71397 * 10 8 7 42 42 H 1.08000 * 119.99847 * 359.97438 * 11 10 8 43 43 H 1.08005 * 120.04922 * 0.02969 * 13 12 11 44 44 H 1.08005 * 119.95289 * 180.23375 * 14 13 12 45 45 H 0.96998 * 120.00154 * 179.97438 * 20 19 17 46 46 H 1.08007 * 119.94868 * 179.97438 * 25 15 14 47 47 H 1.07997 * 120.05056 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 6 4.0804 0.7211 -1.2483 6 6 4.0794 0.7214 1.2502 7 7 4.0582 2.8238 0.0013 8 6 5.3833 3.0700 0.0014 9 8 6.1743 2.1449 0.0014 10 6 5.8708 4.4490 0.0082 11 6 7.1982 4.6957 0.0139 12 6 7.6881 6.0812 0.0202 13 6 6.7801 7.1471 0.0142 14 6 7.2433 8.4428 0.0249 15 6 8.6121 8.6946 0.0309 16 8 9.0640 9.9728 0.0366 17 6 10.3944 10.1509 0.1589 18 1 11.0553 9.2968 0.1646 19 6 10.9147 11.4313 0.2775 20 7 10.1100 12.4714 0.2701 21 14 12.7586 11.6783 0.4464 22 1 13.4440 11.1217 -0.7476 23 1 13.0557 13.1290 0.5569 24 1 13.2419 10.9803 1.6648 25 6 9.5184 7.6384 0.0314 26 6 9.0643 6.3394 0.0265 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6766 1.9563 0.8901 33 1 1.6766 1.9564 -0.8899 34 1 5.1704 0.7215 -1.2481 35 1 3.7171 -0.3065 -1.2484 36 1 3.7175 1.2349 -2.1385 37 1 3.7157 1.2354 2.1399 38 1 3.7161 -0.3062 1.2501 39 1 5.1695 0.7211 1.2504 40 1 3.4279 3.5610 0.0008 41 1 5.1690 5.2698 0.0084 42 1 7.9001 3.8748 0.0139 43 1 5.7178 6.9525 0.0054 44 1 6.5437 9.2656 0.0241 45 1 10.4738 13.3667 0.3534 46 1 10.5797 7.8386 0.0357 47 1 9.7683 5.5205 0.0274 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065042980.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:36 Heat of formation + Delta-G solvation = -60.583977 kcal Electronic energy + Delta-G solvation = -25020.567404 eV Core-core repulsion = 21361.020566 eV Total energy + Delta-G solvation = -3659.546838 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.16654 -40.78672 -38.67218 -38.07529 -34.72472 -34.60619 -33.99565 -32.09647 -31.94364 -29.53438 -28.22738 -27.58000 -27.49252 -25.06477 -23.78058 -23.17094 -21.84413 -20.59508 -20.27372 -19.69631 -18.82335 -18.24187 -16.96682 -16.44612 -16.41079 -16.10893 -15.94784 -15.80258 -15.61248 -15.46968 -14.86162 -14.82638 -14.58107 -14.46184 -14.10549 -14.00018 -13.59425 -13.33273 -13.20239 -13.10262 -13.00896 -12.75763 -12.68190 -12.52694 -12.50501 -12.22515 -12.14633 -12.10775 -11.95266 -11.60540 -11.33367 -11.21585 -11.08608 -10.55166 -10.54632 -9.99302 -9.89275 -8.67076 -8.51861 -6.18258 -0.21942 0.58358 1.16423 1.35751 1.47548 1.51500 2.15596 2.31429 2.43128 2.87065 3.18154 3.42689 3.71288 3.86036 3.95216 3.96495 4.08630 4.11978 4.27412 4.31029 4.33818 4.38949 4.48145 4.60650 4.66733 4.76446 4.77443 4.86948 4.90693 4.94849 5.01446 5.01979 5.03397 5.07824 5.19780 5.23106 5.27698 5.28577 5.34685 5.43305 5.51910 5.52773 5.59543 5.63881 5.71769 5.82847 5.97296 6.10787 6.73032 6.92293 7.39739 7.69318 8.69898 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.040714 B = 0.001818 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.551956 B =15396.986267 C =15873.838612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.113 4.113 4 C 0.170 3.830 5 C -0.161 4.161 6 C -0.161 4.161 7 N -0.712 5.712 8 C 0.551 3.449 9 O -0.582 6.582 10 C -0.245 4.245 11 C 0.012 3.988 12 C -0.169 4.169 13 C -0.039 4.039 14 C -0.207 4.207 15 C 0.129 3.871 16 O -0.220 6.220 17 C -0.419 4.419 18 H 0.105 0.895 19 C -0.018 4.018 20 N -0.913 5.913 21 Si 1.018 2.982 22 H -0.257 1.257 23 H -0.271 1.271 24 H -0.257 1.257 25 C -0.249 4.249 26 C -0.042 4.042 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.048 0.952 35 H 0.078 0.922 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.078 0.922 39 H 0.048 0.952 40 H 0.412 0.588 41 H 0.149 0.851 42 H 0.124 0.876 43 H 0.160 0.840 44 H 0.123 0.877 45 H 0.275 0.725 46 H 0.125 0.875 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.383 -22.484 -0.305 27.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.151 4.151 4 C 0.085 3.915 5 C -0.219 4.219 6 C -0.219 4.219 7 N -0.364 5.364 8 C 0.342 3.658 9 O -0.465 6.465 10 C -0.266 4.266 11 C -0.008 4.008 12 C -0.170 4.170 13 C -0.056 4.056 14 C -0.226 4.226 15 C 0.077 3.923 16 O -0.125 6.125 17 C -0.494 4.494 18 H 0.122 0.878 19 C -0.216 4.216 20 N -0.550 5.550 21 Si 0.837 3.163 22 H -0.181 1.181 23 H -0.196 1.196 24 H -0.182 1.182 25 C -0.268 4.268 26 C -0.060 4.060 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.097 0.903 39 H 0.067 0.933 40 H 0.249 0.751 41 H 0.166 0.834 42 H 0.142 0.858 43 H 0.177 0.823 44 H 0.141 0.859 45 H 0.084 0.916 46 H 0.142 0.858 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -15.981 -22.683 -0.311 27.749 hybrid contribution 0.774 1.003 0.047 1.268 sum -15.207 -21.680 -0.264 26.483 Atomic orbital electron populations 1.21762 0.95091 1.02015 1.02019 1.21613 0.96313 0.95543 1.02710 1.21808 0.91132 0.98786 1.03366 1.20409 0.94665 0.81032 0.95419 1.22224 1.01796 1.01077 0.96822 1.22226 1.01795 1.01076 0.96827 1.45973 1.06384 1.09144 1.74862 1.18448 0.82687 0.89381 0.75320 1.90724 1.56571 1.47051 1.52115 1.22843 0.96819 0.95560 1.11379 1.22143 0.96034 0.93782 0.88830 1.18798 0.93075 0.92862 1.12293 1.21280 1.00364 0.89803 0.94177 1.20423 0.91897 0.98365 1.11915 1.20187 0.94497 0.84930 0.92724 1.83885 1.26322 1.22658 1.79622 1.21860 0.79706 0.95016 1.52850 0.87753 1.26601 1.06021 0.93517 0.95501 1.70140 1.38012 0.99363 1.47485 0.84653 0.73545 0.78176 0.79922 1.18118 1.19559 1.18177 1.21204 1.00072 0.93010 1.12521 1.21314 0.95318 0.95468 0.93864 0.92570 0.92555 0.92349 0.91419 0.91428 0.90574 0.90555 0.93316 0.90322 0.92548 0.92552 0.90328 0.93320 0.75096 0.83374 0.85822 0.82305 0.85930 0.91595 0.85764 0.83876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 71.98 0.71 -0.43 16 2 C -0.12 -1.09 5.23 30.59 0.16 -0.93 16 3 C -0.11 -1.11 4.38 30.59 0.13 -0.98 16 4 C 0.17 2.64 0.83 3.60 0.00 2.64 16 5 C -0.16 -2.83 8.05 71.98 0.58 -2.25 16 6 C -0.16 -2.83 8.05 71.98 0.58 -2.26 16 7 N -0.71 -12.06 5.10 -427.23 -2.18 -14.24 16 8 C 0.55 13.22 7.15 86.33 0.62 13.84 16 9 O -0.58 -17.99 12.43 -4.42 -0.05 -18.04 16 10 C -0.25 -5.60 9.41 23.62 0.22 -5.37 16 11 C 0.01 0.32 9.45 23.82 0.23 0.55 16 12 C -0.17 -5.32 5.87 -20.13 -0.12 -5.43 16 13 C -0.04 -1.21 9.40 22.55 0.21 -1.00 16 14 C -0.21 -8.29 9.97 22.34 0.22 -8.06 16 15 C 0.13 6.17 6.66 22.72 0.15 6.32 16 16 O -0.22 -12.79 9.74 -20.34 -0.20 -12.99 16 17 C -0.42 -23.66 9.48 67.93 0.64 -23.01 16 18 H 0.11 5.38 5.18 -2.92 -0.02 5.37 16 19 C -0.02 -0.97 5.49 84.86 0.47 -0.50 16 20 N -0.91 -54.44 13.67 21.62 0.30 -54.14 16 21 Si 1.02 41.57 29.55 68.60 2.03 43.60 16 22 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 23 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 24 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 25 C -0.25 -10.52 9.14 22.35 0.20 -10.32 16 26 C -0.04 -1.43 9.78 22.55 0.22 -1.21 16 27 H 0.06 0.41 8.14 -2.38 -0.02 0.39 16 28 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.07 0.61 6.43 -2.39 -0.02 0.59 16 31 H 0.07 0.61 6.43 -2.39 -0.02 0.59 16 32 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.05 1.18 6.16 -2.39 -0.01 1.17 16 35 H 0.08 1.10 6.43 -2.39 -0.02 1.08 16 36 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 37 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.08 1.10 6.43 -2.39 -0.02 1.08 16 39 H 0.05 1.18 6.16 -2.38 -0.01 1.17 16 40 H 0.41 4.64 8.45 -92.71 -0.78 3.86 16 41 H 0.15 2.58 6.07 -2.91 -0.02 2.57 16 42 H 0.12 3.39 7.52 -2.91 -0.02 3.37 16 43 H 0.16 3.62 6.16 -2.91 -0.02 3.60 16 44 H 0.12 4.76 8.06 -2.91 -0.02 4.73 16 45 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 46 H 0.12 5.30 5.62 -2.91 -0.02 5.29 16 47 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 Total: -1.00 -70.86 378.55 5.33 -65.53 By element: Atomic # 1 Polarization: 28.47 SS G_CDS: 0.20 Total: 28.68 kcal Atomic # 6 Polarization: -43.64 SS G_CDS: 5.24 Total: -38.41 kcal Atomic # 7 Polarization: -66.49 SS G_CDS: -1.88 Total: -68.38 kcal Atomic # 8 Polarization: -30.77 SS G_CDS: -0.25 Total: -31.03 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Total: -70.86 5.33 -65.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065042980.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.947 kcal (2) G-P(sol) polarization free energy of solvation -70.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds