Wall clock time and date at job start Tue Mar 31 2020 13:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47005 * 2 1 4 4 C 1.52997 * 109.47208 * 239.99926 * 2 1 3 5 5 C 1.50699 * 109.47023 * 120.00140 * 2 1 3 6 6 C 1.38169 * 120.02863 * 0.02562 * 5 2 1 7 7 C 1.38245 * 120.05426 * 179.97438 * 6 5 2 8 8 C 1.38284 * 120.11441 * 0.02562 * 7 6 5 9 9 C 1.38131 * 120.05256 * 359.68344 * 8 7 6 10 10 C 1.38705 * 120.02917 * 180.02562 * 5 2 1 11 11 O 1.35900 * 120.05361 * 0.02562 * 10 5 2 12 12 C 1.42906 * 117.00075 * 179.97438 * 11 10 5 13 13 C 1.50706 * 109.47224 * 180.02562 * 12 11 10 14 14 O 1.21292 * 119.99724 * 359.72798 * 13 12 11 15 15 N 1.34770 * 119.99897 * 180.02562 * 13 12 11 16 16 C 1.37095 * 119.99930 * 179.97438 * 15 13 12 17 17 H 1.07999 * 120.00372 * 224.18925 * 16 15 13 18 18 C 1.38947 * 119.99923 * 44.19706 * 16 15 13 19 19 N 1.31415 * 120.00451 * 18.16830 * 18 16 15 20 20 Si 1.86804 * 120.00279 * 198.17070 * 18 16 15 21 21 H 1.48504 * 109.47349 * 89.99421 * 20 18 16 22 22 H 1.48501 * 109.47534 * 209.99783 * 20 18 16 23 23 H 1.48510 * 109.46802 * 329.99827 * 20 18 16 24 24 C 1.46505 * 120.00262 * 359.97438 * 15 13 12 25 25 C 1.52994 * 117.50001 * 183.22919 * 24 15 13 26 26 C 1.52997 * 60.00237 * 252.51257 * 25 24 15 27 27 H 1.08998 * 109.47296 * 299.99674 * 1 2 3 28 28 H 1.08993 * 109.46958 * 60.00042 * 1 2 3 29 29 H 1.08998 * 109.46966 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47341 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.47647 * 300.00097 * 3 2 1 32 32 H 1.09005 * 109.47159 * 59.99897 * 3 2 1 33 33 H 1.09001 * 109.47235 * 300.00469 * 4 2 1 34 34 H 1.09009 * 109.46844 * 60.00266 * 4 2 1 35 35 H 1.08994 * 109.47166 * 179.97438 * 4 2 1 36 36 H 1.08003 * 119.97415 * 359.97438 * 6 5 2 37 37 H 1.08002 * 119.93983 * 179.97438 * 7 6 5 38 38 H 1.07999 * 119.97636 * 179.97438 * 8 7 6 39 39 H 1.07994 * 120.02538 * 180.31839 * 9 8 7 40 40 H 1.09005 * 109.46918 * 60.00398 * 12 11 10 41 41 H 1.08996 * 109.47488 * 300.00508 * 12 11 10 42 42 H 0.96998 * 120.00205 * 174.94121 * 19 18 16 43 43 H 1.09001 * 115.54850 * 328.93883 * 24 15 13 44 44 H 1.09003 * 117.50079 * 0.02562 * 25 24 15 45 45 H 1.09003 * 117.49971 * 145.02228 * 25 24 15 46 46 H 1.09001 * 117.50053 * 252.51084 * 26 25 24 47 47 H 1.09002 * 117.52062 * 107.47832 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0324 -0.7104 1.2304 6 6 1.1350 -1.2362 2.1400 7 6 1.5952 -1.8885 3.2687 8 6 2.9541 -2.0161 3.4907 9 6 3.8553 -1.4974 2.5813 10 6 3.3959 -0.8371 1.4508 11 8 4.2806 -0.3203 0.5579 12 6 5.6695 -0.4875 0.8497 13 6 6.4921 0.1453 -0.2430 14 8 5.9430 0.6820 -1.1819 15 7 7.8379 0.1097 -0.1798 16 6 8.5862 0.6849 -1.1741 17 1 9.4433 0.1642 -1.5749 18 6 8.2422 1.9380 -1.6660 19 7 7.4504 2.7226 -0.9698 20 14 8.9049 2.5077 -3.3170 21 1 7.9666 2.1016 -4.3939 22 1 9.0425 3.9863 -3.3118 23 1 10.2328 1.8878 -3.5578 24 6 8.5011 -0.5438 0.9513 25 6 10.0290 -0.4852 1.0043 26 6 9.3255 -1.7989 0.6578 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6767 -1.7489 -1.2492 34 1 1.6767 -0.2073 -2.1392 35 1 3.1300 -0.7208 -1.2494 36 1 0.0732 -1.1376 1.9691 37 1 0.8921 -2.2985 3.9787 38 1 3.3112 -2.5257 4.3734 39 1 4.9165 -1.6018 2.7526 40 1 5.9024 -1.5506 0.9109 41 1 5.9010 -0.0095 1.8015 42 1 7.2690 3.6245 -1.2771 43 1 7.9625 -0.5054 1.8982 44 1 10.5408 0.0400 0.1978 45 1 10.4960 -0.4081 1.9862 46 1 9.3296 -2.5861 1.4118 47 1 9.3740 -2.1386 -0.3767 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065895169.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:44 Heat of formation + Delta-G solvation = -12.555392 kcal Electronic energy + Delta-G solvation = -27710.276269 eV Core-core repulsion = 24052.812107 eV Total energy + Delta-G solvation = -3657.464163 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.34583 -38.67029 -37.25542 -36.06977 -35.85883 -32.83666 -31.08724 -30.19296 -29.71572 -27.84019 -27.05638 -26.78379 -24.61761 -22.80534 -21.91069 -21.68655 -21.21228 -19.52784 -19.12646 -17.63285 -16.60389 -16.14892 -15.66970 -15.58266 -15.37327 -14.68533 -14.31443 -14.24940 -14.04223 -13.95426 -13.65400 -13.25490 -13.18650 -13.02737 -12.50459 -12.16022 -11.96748 -11.75897 -11.73737 -11.56199 -11.29851 -11.22611 -11.09612 -10.95747 -10.92104 -10.80263 -10.63185 -10.40485 -10.38337 -10.18665 -10.09685 -10.03931 -9.82318 -8.75070 -8.69832 -8.06244 -7.84492 -7.10278 -6.15182 -3.92276 1.47850 1.64102 3.28148 3.35230 3.39912 3.45110 3.91812 4.01328 4.27194 4.68055 4.77227 4.82546 4.95496 5.08647 5.22543 5.24941 5.27342 5.30557 5.44883 5.50500 5.58061 5.60784 5.67342 5.68062 5.76429 5.78659 5.83895 5.93868 6.02624 6.09911 6.11437 6.16073 6.16370 6.25780 6.36002 6.37388 6.38908 6.58646 6.59893 6.65927 6.69912 6.82162 6.86985 6.90678 7.06778 7.57294 7.76188 8.22382 8.97906 9.09500 9.57694 10.19339 10.93626 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014432 B = 0.004456 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.705686 B = 6282.142845 C = 7798.766845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.016 4.016 3 C -0.142 4.142 4 C -0.141 4.141 5 C -0.102 4.102 6 C -0.088 4.088 7 C -0.167 4.167 8 C -0.087 4.087 9 C -0.213 4.213 10 C 0.143 3.857 11 O -0.273 6.273 12 C 0.045 3.955 13 C 0.485 3.515 14 O -0.508 6.508 15 N -0.423 5.423 16 C -0.349 4.349 17 H 0.080 0.920 18 C 0.074 3.926 19 N -0.831 5.831 20 Si 0.913 3.087 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.274 1.274 24 C 0.068 3.932 25 C -0.170 4.170 26 C -0.207 4.207 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.083 0.917 31 H 0.052 0.948 32 H 0.044 0.956 33 H 0.044 0.956 34 H 0.052 0.948 35 H 0.080 0.920 36 H 0.128 0.872 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.127 0.873 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.266 0.734 43 H 0.100 0.900 44 H 0.108 0.892 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.433 -8.184 8.214 14.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.016 4.016 3 C -0.199 4.199 4 C -0.198 4.198 5 C -0.103 4.103 6 C -0.106 4.106 7 C -0.186 4.186 8 C -0.105 4.105 9 C -0.232 4.232 10 C 0.096 3.904 11 O -0.185 6.185 12 C -0.034 4.034 13 C 0.270 3.730 14 O -0.383 6.383 15 N -0.146 5.146 16 C -0.475 4.475 17 H 0.097 0.903 18 C -0.137 4.137 19 N -0.463 5.463 20 Si 0.741 3.259 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.038 4.038 25 C -0.208 4.208 26 C -0.246 4.246 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.102 0.898 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.099 0.901 36 H 0.146 0.854 37 H 0.135 0.865 38 H 0.137 0.863 39 H 0.144 0.856 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.076 0.924 43 H 0.118 0.882 44 H 0.127 0.873 45 H 0.103 0.897 46 H 0.103 0.897 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.923 -7.596 7.481 13.903 hybrid contribution 0.579 0.198 -0.216 0.649 sum -8.344 -7.398 7.265 13.309 Atomic orbital electron populations 1.21979 0.95013 1.01315 1.01599 1.19309 0.94421 0.95567 0.92329 1.21906 1.03894 0.93609 1.00489 1.21900 1.03645 0.98661 0.95622 1.19271 0.89880 1.02894 0.98248 1.20962 0.99266 0.96913 0.93421 1.20938 0.95450 1.03384 0.98782 1.20859 0.93095 0.98344 0.98230 1.21284 1.00521 1.04945 0.96427 1.19023 0.89764 0.92647 0.88932 1.86285 1.15164 1.72820 1.44210 1.22743 0.79979 1.00709 1.00016 1.19249 0.82624 0.84033 0.87066 1.90572 1.69759 1.43592 1.34404 1.42600 1.02665 1.50894 1.18455 1.18836 1.13439 1.00510 1.14753 0.90253 1.25256 0.95133 0.95282 0.98014 1.69819 1.32969 1.06621 1.36939 0.86198 0.78712 0.77375 0.83659 1.20221 1.21248 1.19864 1.21748 0.92303 0.97887 0.91877 1.23056 0.95101 1.00027 1.02569 1.23331 1.07369 0.91698 1.02179 0.92665 0.92515 0.92700 0.89849 0.92930 0.93647 0.93644 0.92896 0.90092 0.85400 0.86477 0.86312 0.85557 0.90975 0.91105 0.92431 0.88232 0.87337 0.89725 0.89729 0.88962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 7.13 37.16 0.27 -1.41 16 2 C -0.02 -0.24 0.75 -155.66 -0.12 -0.36 16 3 C -0.14 -2.37 8.26 37.16 0.31 -2.07 16 4 C -0.14 -2.27 8.26 37.16 0.31 -1.96 16 5 C -0.10 -1.57 4.77 -104.48 -0.50 -2.06 16 6 C -0.09 -1.13 8.97 -39.60 -0.36 -1.48 16 7 C -0.17 -1.99 10.04 -39.56 -0.40 -2.39 16 8 C -0.09 -1.08 10.04 -39.60 -0.40 -1.48 16 9 C -0.21 -3.10 9.04 -39.43 -0.36 -3.46 16 10 C 0.14 2.41 6.28 -39.22 -0.25 2.17 16 11 O -0.27 -5.42 5.34 -39.33 -0.21 -5.63 16 12 C 0.04 0.87 3.84 36.01 0.14 1.01 16 13 C 0.48 12.16 7.04 -10.99 -0.08 12.08 16 14 O -0.51 -14.91 14.26 -14.36 -0.20 -15.11 16 15 N -0.42 -10.31 2.83 -107.73 -0.31 -10.62 16 16 C -0.35 -9.31 7.92 -14.94 -0.12 -9.43 16 17 H 0.08 2.05 7.25 -52.49 -0.38 1.67 16 18 C 0.07 2.06 4.39 -17.47 -0.08 1.98 16 19 N -0.83 -24.34 11.74 55.50 0.65 -23.69 16 20 Si 0.91 21.72 29.59 -169.99 -5.03 16.69 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 24 C 0.07 1.30 5.87 -67.93 -0.40 0.90 16 25 C -0.17 -2.93 9.80 -26.74 -0.26 -3.19 16 26 C -0.21 -3.36 10.36 -26.73 -0.28 -3.64 16 27 H 0.05 0.60 7.51 -51.93 -0.39 0.21 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.58 7.51 -51.93 -0.39 0.19 16 30 H 0.08 1.71 6.14 -51.93 -0.32 1.39 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.05 0.80 8.14 -51.92 -0.42 0.38 16 35 H 0.08 1.57 6.14 -51.93 -0.32 1.25 16 36 H 0.13 1.36 5.90 -52.48 -0.31 1.05 16 37 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 38 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 39 H 0.13 1.68 6.30 -52.49 -0.33 1.35 16 40 H 0.07 1.23 7.61 -51.93 -0.40 0.83 16 41 H 0.07 1.28 7.10 -51.93 -0.37 0.91 16 42 H 0.27 7.49 8.32 -40.82 -0.34 7.15 16 43 H 0.10 1.68 6.96 -51.93 -0.36 1.32 16 44 H 0.11 2.09 6.72 -51.93 -0.35 1.74 16 45 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 46 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 47 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 LS Contribution 372.56 15.07 5.61 5.61 Total: -1.00 -32.00 372.56 -9.32 -41.32 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -7.28 Total: 6.22 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: -2.56 Total: -14.79 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: 0.35 Total: -34.31 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.41 Total: -20.75 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.00 -9.32 -41.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065895169.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.767 kcal (2) G-P(sol) polarization free energy of solvation -32.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds