Wall clock time and date at job start Tue Mar 31 2020 13:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47005 * 2 1 4 4 C 1.52997 * 109.47208 * 239.99926 * 2 1 3 5 5 C 1.50699 * 109.47023 * 120.00140 * 2 1 3 6 6 C 1.38169 * 120.02863 * 0.02562 * 5 2 1 7 7 C 1.38245 * 120.05426 * 179.97438 * 6 5 2 8 8 C 1.38284 * 120.11441 * 0.02562 * 7 6 5 9 9 C 1.38131 * 120.05256 * 359.68344 * 8 7 6 10 10 C 1.38705 * 120.02917 * 180.02562 * 5 2 1 11 11 O 1.35900 * 120.05361 * 0.02562 * 10 5 2 12 12 C 1.42906 * 117.00075 * 179.97438 * 11 10 5 13 13 C 1.50706 * 109.47224 * 180.02562 * 12 11 10 14 14 O 1.21292 * 119.99724 * 359.72798 * 13 12 11 15 15 N 1.34770 * 119.99897 * 180.02562 * 13 12 11 16 16 C 1.37095 * 119.99930 * 179.97438 * 15 13 12 17 17 H 1.07999 * 120.00372 * 224.18925 * 16 15 13 18 18 C 1.38947 * 119.99923 * 44.19706 * 16 15 13 19 19 N 1.31415 * 120.00451 * 18.16830 * 18 16 15 20 20 Si 1.86804 * 120.00279 * 198.17070 * 18 16 15 21 21 H 1.48504 * 109.47349 * 89.99421 * 20 18 16 22 22 H 1.48501 * 109.47534 * 209.99783 * 20 18 16 23 23 H 1.48510 * 109.46802 * 329.99827 * 20 18 16 24 24 C 1.46505 * 120.00262 * 359.97438 * 15 13 12 25 25 C 1.52994 * 117.50001 * 183.22919 * 24 15 13 26 26 C 1.52997 * 60.00237 * 252.51257 * 25 24 15 27 27 H 1.08998 * 109.47296 * 299.99674 * 1 2 3 28 28 H 1.08993 * 109.46958 * 60.00042 * 1 2 3 29 29 H 1.08998 * 109.46966 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47341 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.47647 * 300.00097 * 3 2 1 32 32 H 1.09005 * 109.47159 * 59.99897 * 3 2 1 33 33 H 1.09001 * 109.47235 * 300.00469 * 4 2 1 34 34 H 1.09009 * 109.46844 * 60.00266 * 4 2 1 35 35 H 1.08994 * 109.47166 * 179.97438 * 4 2 1 36 36 H 1.08003 * 119.97415 * 359.97438 * 6 5 2 37 37 H 1.08002 * 119.93983 * 179.97438 * 7 6 5 38 38 H 1.07999 * 119.97636 * 179.97438 * 8 7 6 39 39 H 1.07994 * 120.02538 * 180.31839 * 9 8 7 40 40 H 1.09005 * 109.46918 * 60.00398 * 12 11 10 41 41 H 1.08996 * 109.47488 * 300.00508 * 12 11 10 42 42 H 0.96998 * 120.00205 * 174.94121 * 19 18 16 43 43 H 1.09001 * 115.54850 * 328.93883 * 24 15 13 44 44 H 1.09003 * 117.50079 * 0.02562 * 25 24 15 45 45 H 1.09003 * 117.49971 * 145.02228 * 25 24 15 46 46 H 1.09001 * 117.50053 * 252.51084 * 26 25 24 47 47 H 1.09002 * 117.52062 * 107.47832 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0324 -0.7104 1.2304 6 6 1.1350 -1.2362 2.1400 7 6 1.5952 -1.8885 3.2687 8 6 2.9541 -2.0161 3.4907 9 6 3.8553 -1.4974 2.5813 10 6 3.3959 -0.8371 1.4508 11 8 4.2806 -0.3203 0.5579 12 6 5.6695 -0.4875 0.8497 13 6 6.4921 0.1453 -0.2430 14 8 5.9430 0.6820 -1.1819 15 7 7.8379 0.1097 -0.1798 16 6 8.5862 0.6849 -1.1741 17 1 9.4433 0.1642 -1.5749 18 6 8.2422 1.9380 -1.6660 19 7 7.4504 2.7226 -0.9698 20 14 8.9049 2.5077 -3.3170 21 1 7.9666 2.1016 -4.3939 22 1 9.0425 3.9863 -3.3118 23 1 10.2328 1.8878 -3.5578 24 6 8.5011 -0.5438 0.9513 25 6 10.0290 -0.4852 1.0043 26 6 9.3255 -1.7989 0.6578 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6767 -1.7489 -1.2492 34 1 1.6767 -0.2073 -2.1392 35 1 3.1300 -0.7208 -1.2494 36 1 0.0732 -1.1376 1.9691 37 1 0.8921 -2.2985 3.9787 38 1 3.3112 -2.5257 4.3734 39 1 4.9165 -1.6018 2.7526 40 1 5.9024 -1.5506 0.9109 41 1 5.9010 -0.0095 1.8015 42 1 7.2690 3.6245 -1.2771 43 1 7.9625 -0.5054 1.8982 44 1 10.5408 0.0400 0.1978 45 1 10.4960 -0.4081 1.9862 46 1 9.3296 -2.5861 1.4118 47 1 9.3740 -2.1386 -0.3767 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065895169.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:42 Heat of formation + Delta-G solvation = -29.081286 kcal Electronic energy + Delta-G solvation = -27710.992886 eV Core-core repulsion = 24052.812107 eV Total energy + Delta-G solvation = -3658.180779 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.55425 -40.35222 -38.59221 -37.59367 -37.10617 -34.79227 -32.97826 -31.25323 -30.95304 -29.31794 -28.17776 -28.11995 -26.48706 -23.90926 -23.27964 -22.95917 -22.70475 -21.21871 -20.35972 -18.87931 -18.33318 -17.88982 -17.14956 -16.77707 -16.70080 -16.47404 -15.85771 -15.50080 -15.25464 -15.15757 -15.07151 -14.77376 -14.59505 -14.44484 -13.96592 -13.57513 -13.42521 -13.07258 -12.98954 -12.89456 -12.75973 -12.74675 -12.68090 -12.51508 -12.26330 -12.24625 -12.08020 -11.82995 -11.79742 -11.69799 -11.55151 -11.26850 -11.23989 -10.76125 -9.98798 -9.72512 -9.03061 -8.98438 -8.23343 -6.02618 0.45645 0.58452 1.33613 1.42969 1.47349 1.99506 2.21363 2.39781 2.88916 3.09711 3.19503 3.31370 3.69593 3.83690 3.89587 4.03230 4.13464 4.15208 4.16505 4.22572 4.24517 4.27005 4.37739 4.47192 4.55165 4.57976 4.75824 4.77008 4.79548 4.89253 4.90448 4.94935 5.01381 5.10187 5.11397 5.18721 5.25572 5.31864 5.41653 5.44751 5.45353 5.48687 5.56947 5.67253 5.74060 5.98073 6.16056 6.54856 6.97768 7.16480 7.61318 8.27560 8.85101 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014432 B = 0.004456 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.705686 B = 6282.142845 C = 7798.766845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.016 4.016 3 C -0.136 4.136 4 C -0.136 4.136 5 C -0.120 4.120 6 C -0.087 4.087 7 C -0.159 4.159 8 C -0.086 4.086 9 C -0.222 4.222 10 C 0.106 3.894 11 O -0.301 6.301 12 C 0.063 3.937 13 C 0.466 3.534 14 O -0.568 6.568 15 N -0.437 5.437 16 C -0.354 4.354 17 H 0.082 0.918 18 C 0.023 3.977 19 N -0.870 5.870 20 Si 0.969 3.031 21 H -0.293 1.293 22 H -0.281 1.281 23 H -0.251 1.251 24 C 0.035 3.965 25 C -0.166 4.166 26 C -0.178 4.178 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.036 0.964 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.039 0.961 36 H 0.154 0.846 37 H 0.153 0.847 38 H 0.150 0.850 39 H 0.134 0.866 40 H 0.097 0.903 41 H 0.083 0.917 42 H 0.259 0.741 43 H 0.125 0.875 44 H 0.082 0.918 45 H 0.119 0.881 46 H 0.127 0.873 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.399 -10.575 10.832 17.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.016 4.016 3 C -0.193 4.193 4 C -0.193 4.193 5 C -0.121 4.121 6 C -0.104 4.104 7 C -0.177 4.177 8 C -0.104 4.104 9 C -0.241 4.241 10 C 0.060 3.940 11 O -0.214 6.214 12 C -0.016 4.016 13 C 0.254 3.746 14 O -0.447 6.447 15 N -0.159 5.159 16 C -0.482 4.482 17 H 0.100 0.900 18 C -0.184 4.184 19 N -0.505 5.505 20 Si 0.794 3.206 21 H -0.220 1.220 22 H -0.206 1.206 23 H -0.174 1.174 24 C -0.070 4.070 25 C -0.204 4.204 26 C -0.216 4.216 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.058 0.942 36 H 0.172 0.828 37 H 0.170 0.830 38 H 0.168 0.832 39 H 0.152 0.848 40 H 0.115 0.885 41 H 0.101 0.899 42 H 0.068 0.932 43 H 0.143 0.857 44 H 0.100 0.900 45 H 0.137 0.863 46 H 0.145 0.855 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.839 -10.024 10.136 17.321 hybrid contribution 0.868 0.823 -0.948 1.526 sum -8.971 -9.201 9.188 15.798 Atomic orbital electron populations 1.21923 0.91960 1.02749 1.02571 1.19295 0.96734 0.93706 0.91871 1.21818 1.00848 0.95757 1.00906 1.21823 1.00924 0.99852 0.96720 1.19472 0.89808 1.03819 0.98997 1.21302 1.00124 0.96024 0.92964 1.21407 0.95933 1.01729 0.98593 1.21267 0.93174 0.97458 0.98471 1.21493 1.01560 1.04884 0.96146 1.19419 0.90019 0.94665 0.89872 1.86274 1.15120 1.74147 1.45883 1.22412 0.80031 1.01380 0.97739 1.20205 0.83288 0.83330 0.87761 1.90520 1.71098 1.46154 1.36978 1.42828 1.02876 1.50608 1.19603 1.19099 1.13167 1.00238 1.15659 0.90014 1.26068 0.95651 0.95823 1.00859 1.69937 1.35272 1.06693 1.38620 0.85336 0.78680 0.77304 0.79303 1.21995 1.20621 1.17409 1.22097 0.93497 1.00105 0.91262 1.23115 0.93404 1.00333 1.03525 1.23346 1.04129 0.91661 1.02494 0.91230 0.92094 0.90945 0.94451 0.92908 0.92675 0.92185 0.92830 0.94238 0.82803 0.82951 0.83188 0.84834 0.88482 0.89914 0.93156 0.85705 0.89957 0.86290 0.85486 0.90676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 7.13 71.98 0.51 -2.38 16 2 C -0.02 -0.48 0.75 -52.93 -0.04 -0.52 16 3 C -0.14 -4.81 8.26 71.98 0.59 -4.21 16 4 C -0.14 -4.56 8.26 71.98 0.59 -3.97 16 5 C -0.12 -3.59 4.77 -19.77 -0.09 -3.68 16 6 C -0.09 -1.95 8.97 22.25 0.20 -1.75 16 7 C -0.16 -3.09 10.04 22.28 0.22 -2.87 16 8 C -0.09 -1.82 10.04 22.26 0.22 -1.60 16 9 C -0.22 -6.11 9.04 22.37 0.20 -5.91 16 10 C 0.11 3.58 6.28 22.50 0.14 3.72 16 11 O -0.30 -12.64 5.34 -73.39 -0.39 -13.03 16 12 C 0.06 2.54 3.84 71.24 0.27 2.81 16 13 C 0.47 24.61 7.04 87.66 0.62 25.22 16 14 O -0.57 -35.83 14.26 15.97 0.23 -35.60 16 15 N -0.44 -21.92 2.83 -613.13 -1.74 -23.66 16 16 C -0.35 -19.57 7.92 84.04 0.67 -18.91 16 17 H 0.08 4.34 7.25 -2.91 -0.02 4.32 16 18 C 0.02 1.30 4.39 84.93 0.37 1.67 16 19 N -0.87 -53.90 11.74 21.66 0.25 -53.65 16 20 Si 0.97 46.38 29.59 68.60 2.03 48.41 16 21 H -0.29 -14.69 7.11 99.48 0.71 -13.99 16 22 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 23 H -0.25 -10.89 7.11 99.48 0.71 -10.19 16 24 C 0.04 1.31 5.87 44.99 0.26 1.58 16 25 C -0.17 -5.46 9.80 30.59 0.30 -5.16 16 26 C -0.18 -5.35 10.36 30.59 0.32 -5.04 16 27 H 0.07 1.29 7.51 -2.39 -0.02 1.28 16 28 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.07 1.30 7.51 -2.39 -0.02 1.29 16 30 H 0.04 1.66 6.14 -2.39 -0.01 1.65 16 31 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 33 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 35 H 0.04 1.65 6.14 -2.39 -0.01 1.64 16 36 H 0.15 2.59 5.90 -2.91 -0.02 2.57 16 37 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 38 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 39 H 0.13 3.32 6.30 -2.91 -0.02 3.30 16 40 H 0.10 3.30 7.61 -2.38 -0.02 3.28 16 41 H 0.08 3.04 7.10 -2.39 -0.02 3.02 16 42 H 0.26 15.56 8.32 -92.71 -0.77 14.78 16 43 H 0.13 3.97 6.96 -2.39 -0.02 3.96 16 44 H 0.08 3.15 6.72 -2.39 -0.02 3.14 16 45 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16 46 H 0.13 2.79 8.14 -2.39 -0.02 2.78 16 47 H 0.07 2.54 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -76.88 372.56 6.71 -70.17 By element: Atomic # 1 Polarization: 27.37 SS G_CDS: 0.96 Total: 28.33 kcal Atomic # 6 Polarization: -26.34 SS G_CDS: 5.37 Total: -20.97 kcal Atomic # 7 Polarization: -75.82 SS G_CDS: -1.48 Total: -77.30 kcal Atomic # 8 Polarization: -48.46 SS G_CDS: -0.16 Total: -48.63 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -76.88 6.71 -70.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065895169.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.090 kcal (2) G-P(sol) polarization free energy of solvation -76.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds