Wall clock time and date at job start Tue Mar 31 2020 11:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47021 * 2 1 4 4 C 1.52997 * 109.47164 * 174.99755 * 3 2 1 5 5 C 1.53006 * 109.46974 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47000 * 300.00410 * 5 4 3 7 7 C 1.53006 * 109.46626 * 180.02562 * 6 5 4 8 8 N 1.46498 * 109.46726 * 174.99859 * 7 6 5 9 9 S 1.65599 * 119.99891 * 165.00115 * 8 7 6 10 10 O 1.42106 * 104.27827 * 181.06923 * 9 8 7 11 11 O 1.42100 * 104.27749 * 308.92849 * 9 8 7 12 12 C 1.81400 * 104.45258 * 64.99641 * 9 8 7 13 13 C 1.52991 * 109.47496 * 180.02562 * 12 9 8 14 14 C 1.52996 * 109.47398 * 180.02562 * 13 12 9 15 15 C 1.50701 * 109.47516 * 179.97438 * 14 13 12 16 16 H 1.08009 * 119.99815 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00547 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99310 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00260 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47253 * 59.99801 * 19 17 15 21 21 H 1.48503 * 109.47090 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.46811 * 299.99941 * 19 17 15 23 23 C 1.52997 * 109.47592 * 59.99968 * 6 5 4 24 24 C 1.52996 * 109.46975 * 300.00042 * 23 6 5 25 25 H 1.09000 * 109.47847 * 300.00115 * 1 2 3 26 26 H 1.09004 * 109.47446 * 60.00542 * 1 2 3 27 27 H 1.09002 * 109.46905 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47518 * 239.99913 * 2 1 3 29 29 H 1.09004 * 109.46986 * 119.99190 * 2 1 3 30 30 H 1.09000 * 109.47050 * 54.99751 * 3 2 1 31 31 H 1.09000 * 109.47140 * 60.00051 * 4 3 2 32 32 H 1.09001 * 109.46922 * 299.99751 * 4 3 2 33 33 H 1.08993 * 109.46765 * 179.97438 * 5 4 3 34 34 H 1.09000 * 109.46866 * 60.00225 * 5 4 3 35 35 H 1.09000 * 109.47160 * 299.99635 * 6 5 4 36 36 H 1.08995 * 109.46794 * 294.99833 * 7 6 5 37 37 H 1.09000 * 109.47314 * 54.99967 * 7 6 5 38 38 H 0.97001 * 120.00766 * 344.99834 * 8 7 6 39 39 H 1.09003 * 109.46872 * 300.00505 * 12 9 8 40 40 H 1.09002 * 109.46746 * 59.99685 * 12 9 8 41 41 H 1.09003 * 109.47406 * 300.00096 * 13 12 9 42 42 H 1.09002 * 109.47447 * 60.00033 * 13 12 9 43 43 H 1.09001 * 109.47185 * 299.99934 * 14 13 12 44 44 H 1.08999 * 109.47193 * 59.99999 * 14 13 12 45 45 H 0.97006 * 119.99899 * 179.97438 * 18 17 15 46 46 H 1.09000 * 109.47140 * 59.99654 * 23 6 5 47 47 H 1.09001 * 109.47375 * 179.97438 * 23 6 5 48 48 H 1.09004 * 109.47368 * 299.99783 * 24 23 6 49 49 H 1.08996 * 109.47261 * 180.02562 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5648 1.4444 0.1258 5 6 4.0748 2.8870 0.1251 6 6 3.6699 3.5704 -1.1825 7 6 4.1805 5.0128 -1.1833 8 7 3.8979 5.6300 -2.4815 9 16 3.9942 7.2741 -2.6552 10 8 3.6368 7.5048 -4.0111 11 8 3.2027 7.7857 -1.5916 12 6 5.7468 7.6560 -2.3850 13 6 5.9669 9.1639 -2.5199 14 6 7.4453 9.4860 -2.2927 15 6 7.6622 10.9713 -2.4263 16 1 6.8289 11.6208 -2.6504 17 6 8.9243 11.5013 -2.2613 18 7 9.9389 10.7105 -1.9879 19 14 9.1931 13.3425 -2.4262 20 1 8.3699 14.0553 -1.4165 21 1 10.6280 13.6550 -2.2057 22 1 8.7950 13.7808 -3.7881 23 6 2.1452 3.5686 -1.3083 24 6 1.6352 2.1261 -1.3076 25 1 -0.3635 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 1.6053 1.9816 0.8418 31 1 3.9994 0.9054 -0.7160 32 1 3.8531 0.9572 1.0572 33 1 5.1610 2.8883 0.2152 34 1 3.6401 3.4264 0.9667 35 1 4.1046 3.0311 -2.0241 36 1 3.6792 5.5761 -0.3963 37 1 5.2559 5.0177 -1.0051 38 1 3.6544 5.0758 -3.2395 39 1 6.0388 7.3345 -1.3852 40 1 6.3511 7.1324 -3.1258 41 1 5.6749 9.4858 -3.5196 42 1 5.3627 9.6872 -1.7788 43 1 7.7378 9.1641 -1.2932 44 1 8.0492 8.9629 -3.0341 45 1 10.8270 11.0833 -1.8722 46 1 1.7105 4.1079 -0.4667 47 1 1.8568 4.0559 -2.2397 48 1 2.0698 1.5866 -2.1492 49 1 0.5489 2.1247 -1.3977 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068901680.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:37 Heat of formation + Delta-G solvation = -132.405748 kcal Electronic energy + Delta-G solvation = -24708.399534 eV Core-core repulsion = 21181.182222 eV Total energy + Delta-G solvation = -3527.217313 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.56700 -36.89042 -36.12598 -35.69892 -34.66209 -33.44192 -32.18263 -31.04320 -29.71094 -27.80045 -25.67219 -23.74307 -23.38733 -22.47035 -20.81046 -20.58107 -20.14357 -19.09121 -17.42956 -16.68915 -16.32126 -15.75173 -15.70788 -15.21015 -14.98046 -14.75473 -14.48583 -14.25558 -14.09719 -13.98666 -13.38193 -13.26123 -12.81448 -12.57313 -12.44305 -12.27670 -12.09449 -11.93242 -11.82350 -11.75751 -11.74958 -11.55610 -11.37374 -11.27399 -11.17940 -11.02939 -10.89534 -10.86680 -10.71863 -10.43863 -10.31292 -10.22296 -9.94336 -9.65342 -9.30974 -9.07398 -8.40327 -6.05481 -4.08531 0.49756 2.88948 3.32332 3.36087 3.39389 3.96396 4.23894 4.31068 4.39943 4.42663 4.46129 4.61712 4.73312 4.78957 4.97693 5.09040 5.10503 5.15286 5.19340 5.21299 5.23363 5.24585 5.30742 5.32785 5.42001 5.48419 5.56989 5.58924 5.65059 5.71214 5.79403 5.85809 5.87449 5.90353 5.92511 5.94929 6.05540 6.12482 6.23656 6.27614 6.45710 6.87395 6.93616 7.56888 7.67116 7.92432 8.33067 8.97433 9.56041 11.05692 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.029483 B = 0.002195 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.462863 B =12753.460642 C =13367.067150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.120 4.120 3 C -0.089 4.089 4 C -0.112 4.112 5 C -0.116 4.116 6 C -0.091 4.091 7 C 0.116 3.884 8 N -1.124 6.124 9 S 2.601 3.399 10 O -0.965 6.965 11 O -0.963 6.963 12 C -0.609 4.609 13 C -0.106 4.106 14 C 0.031 3.969 15 C -0.527 4.527 16 H 0.058 0.942 17 C 0.057 3.943 18 N -0.895 5.895 19 Si 0.895 3.105 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 C -0.117 4.117 24 C -0.115 4.115 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.414 0.586 39 H 0.126 0.874 40 H 0.128 0.872 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.020 0.980 44 H 0.020 0.980 45 H 0.262 0.738 46 H 0.066 0.934 47 H 0.065 0.935 48 H 0.060 0.940 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.065 -23.295 3.900 28.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.108 4.108 4 C -0.150 4.150 5 C -0.154 4.154 6 C -0.111 4.111 7 C -0.010 4.010 8 N -0.882 5.882 9 S 2.697 3.303 10 O -0.956 6.956 11 O -0.953 6.953 12 C -0.741 4.741 13 C -0.145 4.145 14 C -0.008 4.008 15 C -0.565 4.565 16 H 0.076 0.924 17 C -0.144 4.144 18 N -0.534 5.534 19 Si 0.723 3.277 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.201 1.201 23 C -0.155 4.155 24 C -0.152 4.152 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.247 0.753 39 H 0.144 0.856 40 H 0.147 0.853 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.039 0.961 44 H 0.039 0.961 45 H 0.071 0.929 46 H 0.084 0.916 47 H 0.084 0.916 48 H 0.079 0.921 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.580 -22.621 3.906 27.744 hybrid contribution 0.911 0.458 -0.245 1.048 sum -14.670 -22.163 3.661 26.829 Atomic orbital electron populations 1.21827 0.95993 1.01391 1.01981 1.21572 0.95857 0.96518 1.01800 1.21224 0.95562 0.95668 0.98339 1.21565 0.95130 0.96510 1.01804 1.21554 1.00985 0.95754 0.97088 1.21346 0.96362 0.94442 0.98932 1.21403 1.00272 0.94636 0.84715 1.55684 1.87050 1.27302 1.18177 1.05249 0.78334 0.72572 0.74124 1.93576 1.82805 1.83624 1.35548 1.93563 1.66116 1.78085 1.57498 1.30540 1.23266 1.08843 1.11428 1.21496 1.03979 0.87172 1.01902 1.19057 0.87538 0.96686 0.97478 1.21223 0.94033 0.92629 1.48636 0.92419 1.25022 0.96102 0.98182 0.95090 1.69948 0.99988 1.35021 1.48480 0.86606 0.77033 0.85320 0.78766 1.20122 1.21249 1.20128 1.21613 0.94668 0.96588 1.02606 1.21640 1.00665 0.95639 0.97303 0.92811 0.92446 0.93037 0.92129 0.92173 0.91162 0.91986 0.91960 0.91451 0.91466 0.90445 0.90137 0.91591 0.75267 0.85570 0.85340 0.91597 0.91576 0.96140 0.96140 0.92853 0.91568 0.91619 0.92089 0.91806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.67 37.16 0.36 -0.50 16 2 C -0.12 -0.69 5.40 -26.73 -0.14 -0.83 16 3 C -0.09 -0.56 2.19 -90.62 -0.20 -0.76 16 4 C -0.11 -0.69 5.20 -26.73 -0.14 -0.83 16 5 C -0.12 -0.78 5.20 -26.73 -0.14 -0.91 16 6 C -0.09 -0.68 2.21 -90.62 -0.20 -0.88 16 7 C 0.12 1.05 5.52 -4.04 -0.02 1.03 16 8 N -1.12 -11.65 5.41 -10.61 -0.06 -11.70 16 9 S 2.60 37.72 5.46 -107.50 -0.59 37.13 16 10 O -0.97 -16.92 18.08 -57.54 -1.04 -17.96 16 11 O -0.96 -16.81 17.50 -57.54 -1.01 -17.82 16 12 C -0.61 -9.30 6.07 37.15 0.23 -9.07 16 13 C -0.11 -2.16 5.16 -26.74 -0.14 -2.30 16 14 C 0.03 0.78 4.97 -27.88 -0.14 0.64 16 15 C -0.53 -14.90 9.11 -34.44 -0.31 -15.22 16 16 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 18 N -0.90 -26.61 13.29 55.43 0.74 -25.87 16 19 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 C -0.12 -0.91 5.09 -26.73 -0.14 -1.05 16 24 C -0.12 -0.77 4.96 -26.73 -0.13 -0.90 16 25 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.32 6.56 -51.93 -0.34 -0.02 16 27 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.79 7.69 -51.93 -0.40 0.39 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.41 3.57 8.33 -34.46 -0.29 3.28 16 39 H 0.13 1.70 8.14 -51.92 -0.42 1.28 16 40 H 0.13 1.76 8.14 -51.92 -0.42 1.34 16 41 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 42 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 46 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.07 0.54 7.54 -51.93 -0.39 0.15 16 48 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.06 0.42 6.56 -51.93 -0.34 0.08 16 LS Contribution 394.26 15.07 5.94 5.94 Total: -1.00 -34.27 394.26 -11.58 -45.85 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -9.33 Total: -2.17 kcal Atomic # 6 Polarization: -28.81 SS G_CDS: -1.22 Total: -30.03 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.68 Total: -37.58 kcal Atomic # 8 Polarization: -33.73 SS G_CDS: -2.05 Total: -35.78 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: 37.72 SS G_CDS: -0.59 Total: 37.13 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.27 -11.58 -45.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068901680.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.554 kcal (2) G-P(sol) polarization free energy of solvation -34.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds