Wall clock time and date at job start Tue Mar 31 2020 11:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47021 * 2 1 4 4 C 1.52997 * 109.47164 * 174.99755 * 3 2 1 5 5 C 1.53006 * 109.46974 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47000 * 300.00410 * 5 4 3 7 7 C 1.53006 * 109.46626 * 180.02562 * 6 5 4 8 8 N 1.46498 * 109.46726 * 174.99859 * 7 6 5 9 9 S 1.65599 * 119.99891 * 165.00115 * 8 7 6 10 10 O 1.42106 * 104.27827 * 181.06923 * 9 8 7 11 11 O 1.42100 * 104.27749 * 308.92849 * 9 8 7 12 12 C 1.81400 * 104.45258 * 64.99641 * 9 8 7 13 13 C 1.52991 * 109.47496 * 180.02562 * 12 9 8 14 14 C 1.52996 * 109.47398 * 180.02562 * 13 12 9 15 15 C 1.50701 * 109.47516 * 179.97438 * 14 13 12 16 16 H 1.08009 * 119.99815 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00547 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99310 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00260 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47253 * 59.99801 * 19 17 15 21 21 H 1.48503 * 109.47090 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.46811 * 299.99941 * 19 17 15 23 23 C 1.52997 * 109.47592 * 59.99968 * 6 5 4 24 24 C 1.52996 * 109.46975 * 300.00042 * 23 6 5 25 25 H 1.09000 * 109.47847 * 300.00115 * 1 2 3 26 26 H 1.09004 * 109.47446 * 60.00542 * 1 2 3 27 27 H 1.09002 * 109.46905 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47518 * 239.99913 * 2 1 3 29 29 H 1.09004 * 109.46986 * 119.99190 * 2 1 3 30 30 H 1.09000 * 109.47050 * 54.99751 * 3 2 1 31 31 H 1.09000 * 109.47140 * 60.00051 * 4 3 2 32 32 H 1.09001 * 109.46922 * 299.99751 * 4 3 2 33 33 H 1.08993 * 109.46765 * 179.97438 * 5 4 3 34 34 H 1.09000 * 109.46866 * 60.00225 * 5 4 3 35 35 H 1.09000 * 109.47160 * 299.99635 * 6 5 4 36 36 H 1.08995 * 109.46794 * 294.99833 * 7 6 5 37 37 H 1.09000 * 109.47314 * 54.99967 * 7 6 5 38 38 H 0.97001 * 120.00766 * 344.99834 * 8 7 6 39 39 H 1.09003 * 109.46872 * 300.00505 * 12 9 8 40 40 H 1.09002 * 109.46746 * 59.99685 * 12 9 8 41 41 H 1.09003 * 109.47406 * 300.00096 * 13 12 9 42 42 H 1.09002 * 109.47447 * 60.00033 * 13 12 9 43 43 H 1.09001 * 109.47185 * 299.99934 * 14 13 12 44 44 H 1.08999 * 109.47193 * 59.99999 * 14 13 12 45 45 H 0.97006 * 119.99899 * 179.97438 * 18 17 15 46 46 H 1.09000 * 109.47140 * 59.99654 * 23 6 5 47 47 H 1.09001 * 109.47375 * 179.97438 * 23 6 5 48 48 H 1.09004 * 109.47368 * 299.99783 * 24 23 6 49 49 H 1.08996 * 109.47261 * 180.02562 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5648 1.4444 0.1258 5 6 4.0748 2.8870 0.1251 6 6 3.6699 3.5704 -1.1825 7 6 4.1805 5.0128 -1.1833 8 7 3.8979 5.6300 -2.4815 9 16 3.9942 7.2741 -2.6552 10 8 3.6368 7.5048 -4.0111 11 8 3.2027 7.7857 -1.5916 12 6 5.7468 7.6560 -2.3850 13 6 5.9669 9.1639 -2.5199 14 6 7.4453 9.4860 -2.2927 15 6 7.6622 10.9713 -2.4263 16 1 6.8289 11.6208 -2.6504 17 6 8.9243 11.5013 -2.2613 18 7 9.9389 10.7105 -1.9879 19 14 9.1931 13.3425 -2.4262 20 1 8.3699 14.0553 -1.4165 21 1 10.6280 13.6550 -2.2057 22 1 8.7950 13.7808 -3.7881 23 6 2.1452 3.5686 -1.3083 24 6 1.6352 2.1261 -1.3076 25 1 -0.3635 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 1.6053 1.9816 0.8418 31 1 3.9994 0.9054 -0.7160 32 1 3.8531 0.9572 1.0572 33 1 5.1610 2.8883 0.2152 34 1 3.6401 3.4264 0.9667 35 1 4.1046 3.0311 -2.0241 36 1 3.6792 5.5761 -0.3963 37 1 5.2559 5.0177 -1.0051 38 1 3.6544 5.0758 -3.2395 39 1 6.0388 7.3345 -1.3852 40 1 6.3511 7.1324 -3.1258 41 1 5.6749 9.4858 -3.5196 42 1 5.3627 9.6872 -1.7788 43 1 7.7378 9.1641 -1.2932 44 1 8.0492 8.9629 -3.0341 45 1 10.8270 11.0833 -1.8722 46 1 1.7105 4.1079 -0.4667 47 1 1.8568 4.0559 -2.2397 48 1 2.0698 1.5866 -2.1492 49 1 0.5489 2.1247 -1.3977 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068901680.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:36 Heat of formation + Delta-G solvation = -153.988862 kcal Electronic energy + Delta-G solvation = -24709.335448 eV Core-core repulsion = 21181.182222 eV Total energy + Delta-G solvation = -3528.153227 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.13067 -38.17688 -37.06793 -36.77958 -36.46288 -34.16355 -34.08659 -31.58943 -30.29926 -29.64758 -26.31185 -25.62120 -23.97206 -23.02417 -22.41870 -21.27964 -20.75000 -20.18539 -18.67464 -18.45653 -17.48547 -17.13206 -16.50702 -16.35847 -16.17264 -15.80368 -15.44007 -15.29772 -14.78990 -14.53577 -14.47368 -14.09293 -13.98213 -13.84682 -13.52800 -13.49390 -13.18711 -13.12190 -13.09780 -12.97039 -12.74969 -12.73337 -12.64365 -12.33455 -12.16254 -12.14955 -11.91003 -11.80869 -11.74224 -11.54351 -11.38877 -11.25353 -11.11814 -10.86561 -10.74654 -10.57239 -10.27509 -8.22780 -6.33789 -0.71087 1.39999 1.42556 1.50510 1.82765 2.39711 2.77567 3.10585 3.25427 3.66447 3.74822 3.81090 3.85906 3.95181 4.06596 4.19977 4.23520 4.40008 4.46593 4.51483 4.59125 4.62945 4.66168 4.68345 4.70616 4.73957 4.81637 4.92194 4.93780 4.99896 5.06309 5.09525 5.15842 5.21476 5.26798 5.32718 5.33910 5.38325 5.42849 5.45025 5.51178 5.60611 5.62910 5.70372 5.79190 6.14793 6.19622 6.81518 7.35353 8.88408 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.029483 B = 0.002195 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.462863 B =12753.460642 C =13367.067150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C -0.088 4.088 4 C -0.110 4.110 5 C -0.115 4.115 6 C -0.085 4.085 7 C 0.106 3.894 8 N -1.107 6.107 9 S 2.632 3.368 10 O -0.995 6.995 11 O -0.992 6.992 12 C -0.609 4.609 13 C -0.107 4.107 14 C 0.031 3.969 15 C -0.554 4.554 16 H 0.060 0.940 17 C 0.002 3.998 18 N -0.929 5.929 19 Si 0.963 3.037 20 H -0.268 1.268 21 H -0.281 1.281 22 H -0.268 1.268 23 C -0.120 4.120 24 C -0.112 4.112 25 H 0.050 0.950 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.425 0.575 39 H 0.145 0.855 40 H 0.146 0.854 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.004 0.996 44 H 0.003 0.997 45 H 0.265 0.735 46 H 0.055 0.945 47 H 0.059 0.941 48 H 0.065 0.935 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.290 -24.119 3.912 28.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.155 4.155 3 C -0.106 4.106 4 C -0.148 4.148 5 C -0.154 4.154 6 C -0.105 4.105 7 C -0.020 4.020 8 N -0.869 5.869 9 S 2.727 3.273 10 O -0.985 6.985 11 O -0.981 6.981 12 C -0.740 4.740 13 C -0.146 4.146 14 C -0.007 4.007 15 C -0.592 4.592 16 H 0.078 0.922 17 C -0.196 4.196 18 N -0.569 5.569 19 Si 0.787 3.213 20 H -0.192 1.192 21 H -0.206 1.206 22 H -0.193 1.193 23 C -0.158 4.158 24 C -0.149 4.149 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.106 0.894 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.261 0.739 39 H 0.163 0.837 40 H 0.164 0.836 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.022 0.978 44 H 0.021 0.979 45 H 0.074 0.926 46 H 0.074 0.926 47 H 0.078 0.922 48 H 0.083 0.917 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.814 -23.445 3.909 28.549 hybrid contribution 0.964 0.636 -0.221 1.176 sum -14.850 -22.809 3.688 27.466 Atomic orbital electron populations 1.21830 0.95991 1.01644 1.01774 1.21552 0.95852 0.96095 1.02031 1.21200 0.95762 0.95898 0.97774 1.21549 0.94856 0.96125 1.02227 1.21560 1.01417 0.95970 0.96411 1.21322 0.95950 0.93402 0.99833 1.21669 1.01486 0.95386 0.83472 1.55263 1.86637 1.25685 1.19340 1.04125 0.77275 0.73242 0.72687 1.93531 1.83119 1.84723 1.37115 1.93528 1.66780 1.79447 1.58381 1.30499 1.24746 1.05414 1.13360 1.21312 1.00473 0.90960 1.01896 1.18960 0.90661 0.95273 0.95835 1.21723 0.94451 0.94357 1.48684 0.92203 1.25938 0.95853 1.03183 0.94612 1.70062 1.00447 1.37118 1.49243 0.85530 0.77219 0.79380 0.79130 1.19248 1.20577 1.19286 1.21631 0.95085 0.97189 1.01849 1.21608 1.00642 0.94936 0.97720 0.93058 0.92625 0.92572 0.91922 0.91885 0.91871 0.91620 0.91478 0.90770 0.91866 0.89376 0.90936 0.89817 0.73864 0.83658 0.83587 0.91669 0.91568 0.97794 0.97896 0.92627 0.92594 0.92199 0.91655 0.91883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 9.67 71.98 0.70 -0.86 16 2 C -0.12 -1.17 5.40 30.60 0.17 -1.01 16 3 C -0.09 -0.98 2.19 -10.79 -0.02 -1.00 16 4 C -0.11 -1.15 5.20 30.60 0.16 -0.99 16 5 C -0.12 -1.34 5.20 30.60 0.16 -1.18 16 6 C -0.09 -1.10 2.21 -10.79 -0.02 -1.13 16 7 C 0.11 1.72 5.52 86.38 0.48 2.20 16 8 N -1.11 -21.04 5.41 -187.49 -1.02 -22.05 16 9 S 2.63 73.58 5.46 -56.49 -0.31 73.28 16 10 O -0.99 -34.03 18.08 -127.65 -2.31 -36.34 16 11 O -0.99 -33.98 17.50 -127.65 -2.23 -36.21 16 12 C -0.61 -17.92 6.07 71.98 0.44 -17.49 16 13 C -0.11 -4.36 5.16 30.59 0.16 -4.20 16 14 C 0.03 1.60 4.97 29.85 0.15 1.75 16 15 C -0.55 -31.63 9.11 25.60 0.23 -31.40 16 16 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 17 C 0.00 0.14 5.46 84.66 0.46 0.60 16 18 N -0.93 -55.68 13.29 21.45 0.28 -55.39 16 19 Si 0.96 44.26 29.54 68.60 2.03 46.29 16 20 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 21 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 22 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 23 C -0.12 -1.73 5.09 30.59 0.16 -1.58 16 24 C -0.11 -1.35 4.96 30.59 0.15 -1.19 16 25 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.05 0.57 6.56 -2.38 -0.02 0.55 16 27 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.07 1.33 7.69 -2.39 -0.02 1.32 16 37 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.42 6.48 8.33 -96.75 -0.81 5.68 16 39 H 0.15 3.69 8.14 -2.39 -0.02 3.67 16 40 H 0.15 3.78 8.14 -2.39 -0.02 3.76 16 41 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 42 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 43 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 44 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 45 H 0.26 14.92 8.31 -92.70 -0.77 14.15 16 46 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.06 0.92 7.54 -2.39 -0.02 0.91 16 48 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 49 H 0.06 0.77 6.56 -2.39 -0.02 0.75 16 Total: -1.00 -72.97 394.26 -0.11 -73.08 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 0.08 Total: 14.83 kcal Atomic # 6 Polarization: -60.83 SS G_CDS: 3.36 Total: -57.47 kcal Atomic # 7 Polarization: -76.71 SS G_CDS: -0.73 Total: -77.44 kcal Atomic # 8 Polarization: -68.01 SS G_CDS: -4.54 Total: -72.56 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 16 Polarization: 73.58 SS G_CDS: -0.31 Total: 73.28 kcal Total: -72.97 -0.11 -73.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068901680.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.909 kcal (2) G-P(sol) polarization free energy of solvation -72.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds