Wall clock time and date at job start Tue Mar 31 2020 12:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 109.47068 * 2 1 4 4 C 1.38165 * 120.03041 * 265.00089 * 3 2 1 5 5 C 1.38243 * 120.05958 * 179.97438 * 4 3 2 6 6 C 1.38292 * 120.11021 * 0.02562 * 5 4 3 7 7 C 1.38122 * 120.05519 * 0.02562 * 6 5 4 8 8 C 1.38715 * 120.02633 * 84.99913 * 3 2 1 9 9 O 1.35901 * 120.05703 * 0.04266 * 8 3 2 10 10 C 1.42902 * 116.99652 * 179.97438 * 9 8 3 11 11 C 1.50709 * 109.46682 * 180.02562 * 10 9 8 12 12 O 1.21293 * 119.99813 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99775 * 180.02562 * 11 10 9 14 14 C 1.37099 * 119.99894 * 359.97438 * 13 11 10 15 15 H 1.08003 * 119.99713 * 233.93646 * 14 13 11 16 16 C 1.38953 * 120.00003 * 53.94410 * 14 13 11 17 17 N 1.31410 * 119.99715 * 22.93148 * 16 14 13 18 18 Si 1.86799 * 119.99828 * 202.93120 * 16 14 13 19 19 H 1.48499 * 109.47338 * 359.97438 * 18 16 14 20 20 H 1.48507 * 109.46798 * 120.00130 * 18 16 14 21 21 H 1.48499 * 109.47118 * 239.99524 * 18 16 14 22 22 C 1.46497 * 119.99983 * 180.02562 * 13 11 10 23 23 C 1.54267 * 110.03294 * 239.34918 * 22 13 11 24 24 C 1.54958 * 104.16103 * 217.13320 * 23 22 13 25 25 C 1.54895 * 102.77633 * 37.88684 * 24 23 22 26 26 C 1.53876 * 110.03431 * 122.12856 * 22 13 11 27 27 H 1.09003 * 109.46825 * 59.99881 * 1 2 3 28 28 H 1.09004 * 109.47105 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46756 * 300.00163 * 1 2 3 30 30 H 1.08993 * 109.47036 * 240.00187 * 2 1 3 31 31 H 1.09002 * 109.47013 * 119.99600 * 2 1 3 32 32 H 1.07999 * 119.96657 * 359.97438 * 4 3 2 33 33 H 1.07995 * 119.94586 * 180.02562 * 5 4 3 34 34 H 1.07993 * 119.97453 * 180.02562 * 6 5 4 35 35 H 1.08002 * 120.02673 * 179.72641 * 7 6 5 36 36 H 1.08997 * 109.47601 * 299.99861 * 10 9 8 37 37 H 1.09003 * 109.47010 * 60.00523 * 10 9 8 38 38 H 0.97006 * 119.99809 * 174.69118 * 17 16 14 39 39 H 1.09005 * 110.01547 * 0.74201 * 22 13 11 40 40 H 1.08996 * 110.48716 * 335.78656 * 23 22 13 41 41 H 1.09006 * 110.48207 * 98.42225 * 23 22 13 42 42 H 1.09000 * 110.72552 * 279.57735 * 24 23 22 43 43 H 1.09006 * 110.92401 * 156.29265 * 24 23 22 44 44 H 1.09000 * 110.48408 * 203.40267 * 25 24 23 45 45 H 1.09003 * 110.59648 * 80.81844 * 25 24 23 46 46 H 1.08998 * 110.03698 * 238.56824 * 26 22 13 47 47 H 1.08999 * 110.03107 * 0.02562 * 26 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3611 2.0380 -1.1916 5 6 2.8215 3.3415 -1.1924 6 6 2.9547 4.0309 -0.0010 7 6 2.6284 3.4181 1.1931 8 6 2.1650 2.1101 1.1964 9 8 1.8431 1.5050 2.3699 10 6 2.0052 2.2752 3.5627 11 6 1.6029 1.4455 4.7548 12 8 1.2160 0.3066 4.5983 13 7 1.6732 1.9690 5.9947 14 6 2.1110 3.2561 6.1716 15 1 2.9254 3.4609 6.8508 16 6 1.5070 4.2971 5.4772 17 7 0.2820 4.1594 5.0217 18 14 2.4362 5.8921 5.1911 19 1 3.7871 5.7940 5.7999 20 1 2.5668 6.1339 3.7316 21 1 1.6932 7.0165 5.8145 22 6 1.2827 1.1623 7.1536 23 6 0.1282 1.8500 7.9114 24 6 0.4331 1.5674 9.4041 25 6 1.9764 1.6841 9.4666 26 6 2.4572 1.0564 8.1420 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 2.2583 1.5015 -2.1233 33 1 3.0775 3.8223 -2.1249 34 1 3.3141 5.0493 -0.0041 35 1 2.7368 3.9554 2.1237 36 1 3.0487 2.5735 3.6637 37 1 1.3766 3.1641 3.5095 38 1 -0.1678 4.9111 4.6050 39 1 0.9765 0.1676 6.8297 40 1 0.1306 2.9227 7.7181 41 1 -0.8288 1.4124 7.6271 42 1 0.1102 0.5637 9.6804 43 1 -0.0370 2.3131 10.0454 44 1 2.3670 1.1257 10.3174 45 1 2.2798 2.7293 9.5258 46 1 2.7204 0.0103 8.2985 47 1 3.3176 1.6055 7.7597 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078207579.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:28 Heat of formation + Delta-G solvation = -59.852378 kcal Electronic energy + Delta-G solvation = -27639.537185 eV Core-core repulsion = 23980.022071 eV Total energy + Delta-G solvation = -3659.515114 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.91774 -38.92478 -37.17767 -36.17680 -34.26362 -33.81142 -31.59670 -29.84765 -29.13027 -27.98474 -27.88751 -26.32304 -24.72647 -23.58598 -22.01569 -20.69494 -20.03722 -19.76083 -19.41329 -17.54949 -16.69247 -15.88168 -15.61513 -15.48232 -15.29475 -15.02227 -14.62625 -14.36691 -14.00478 -13.75576 -13.57436 -13.21955 -13.18159 -12.77926 -12.64040 -12.47562 -12.11378 -11.73780 -11.69505 -11.49097 -11.25600 -11.20434 -11.09492 -10.98573 -10.70186 -10.54408 -10.51989 -10.48862 -10.38461 -10.30913 -10.26026 -10.00263 -9.69600 -9.00379 -8.56057 -8.35483 -7.69248 -7.38331 -6.57522 -4.37144 1.60713 1.78512 2.96015 3.09567 3.12626 3.58311 3.91882 4.00420 4.06450 4.65858 4.88776 5.03222 5.11829 5.31674 5.33551 5.34159 5.44833 5.53872 5.55922 5.71731 5.74817 5.88404 5.94158 6.05713 6.08152 6.14449 6.17188 6.21170 6.27882 6.28651 6.32324 6.40165 6.44138 6.48399 6.50299 6.53532 6.61483 6.69931 6.70219 6.77632 6.85303 6.87615 7.06582 7.13809 7.25357 7.34171 7.87719 7.99199 8.49429 8.75768 9.44705 9.88232 10.44851 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014735 B = 0.004589 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.812378 B = 6100.321651 C = 7423.133490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.073 4.073 3 C -0.121 4.121 4 C -0.085 4.085 5 C -0.169 4.169 6 C -0.086 4.086 7 C -0.210 4.210 8 C 0.148 3.852 9 O -0.292 6.292 10 C 0.047 3.953 11 C 0.517 3.483 12 O -0.591 6.591 13 N -0.443 5.443 14 C -0.342 4.342 15 H 0.087 0.913 16 C 0.048 3.952 17 N -0.848 5.848 18 Si 0.895 3.105 19 H -0.263 1.263 20 H -0.273 1.273 21 H -0.277 1.277 22 C 0.135 3.865 23 C -0.120 4.120 24 C -0.123 4.123 25 C -0.116 4.116 26 C -0.127 4.127 27 H 0.047 0.953 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.122 0.878 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.128 0.872 36 H 0.073 0.927 37 H 0.114 0.886 38 H 0.274 0.726 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.051 0.949 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.052 0.948 45 H 0.065 0.935 46 H 0.053 0.947 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.315 -0.340 -4.319 5.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.110 4.110 3 C -0.122 4.122 4 C -0.103 4.103 5 C -0.188 4.188 6 C -0.104 4.104 7 C -0.229 4.229 8 C 0.101 3.899 9 O -0.204 6.204 10 C -0.031 4.031 11 C 0.306 3.694 12 O -0.475 6.475 13 N -0.164 5.164 14 C -0.470 4.470 15 H 0.105 0.895 16 C -0.160 4.160 17 N -0.483 5.483 18 Si 0.720 3.280 19 H -0.186 1.186 20 H -0.199 1.199 21 H -0.202 1.202 22 C 0.032 3.968 23 C -0.159 4.159 24 C -0.161 4.161 25 C -0.154 4.154 26 C -0.166 4.166 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.140 0.860 33 H 0.135 0.865 34 H 0.136 0.864 35 H 0.146 0.854 36 H 0.091 0.909 37 H 0.131 0.869 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.110 0.890 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.070 0.930 45 H 0.083 0.917 46 H 0.072 0.928 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.916 -1.037 -4.479 5.445 hybrid contribution 0.363 1.502 0.019 1.545 sum 3.279 0.465 -4.460 5.555 Atomic orbital electron populations 1.21688 0.94999 1.01298 1.02003 1.20320 0.96157 0.92133 1.02432 1.19254 1.05065 0.97374 0.90468 1.20770 0.98262 0.94796 0.96433 1.20893 1.04876 0.95311 0.97701 1.20873 0.98214 0.99266 0.92014 1.21396 1.06542 0.95213 0.99713 1.18981 0.93470 0.91008 0.86421 1.86086 1.80663 1.41284 1.12354 1.22936 1.02437 0.95898 0.81802 1.19659 0.79694 0.85725 0.84317 1.90539 1.51573 1.19469 1.85904 1.43253 1.58627 1.11936 1.02602 1.19234 1.16503 0.81884 1.29384 0.89548 1.25670 0.94518 0.99074 0.96730 1.69995 1.09360 1.32531 1.36372 0.86362 0.80678 0.82010 0.78953 1.18649 1.19871 1.20240 1.21588 0.93063 0.95400 0.86779 1.22592 0.97197 1.03379 0.92694 1.22453 0.95924 1.00224 0.97477 1.22252 0.95711 1.00705 0.96695 1.22400 0.99415 0.99571 0.95173 0.93345 0.92815 0.91949 0.91866 0.90341 0.85990 0.86512 0.86371 0.85376 0.90875 0.86886 0.91546 0.90329 0.89020 0.93041 0.92534 0.92398 0.92951 0.91656 0.92836 0.91001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.89 37.16 0.37 -1.80 16 2 C -0.07 -1.14 5.79 -27.88 -0.16 -1.30 16 3 C -0.12 -2.05 5.15 -104.47 -0.54 -2.58 16 4 C -0.08 -1.21 9.68 -39.61 -0.38 -1.59 16 5 C -0.17 -2.34 10.04 -39.56 -0.40 -2.74 16 6 C -0.09 -1.31 10.04 -39.60 -0.40 -1.71 16 7 C -0.21 -3.82 9.04 -39.43 -0.36 -4.18 16 8 C 0.15 2.91 6.66 -39.21 -0.26 2.64 16 9 O -0.29 -6.63 8.81 -39.34 -0.35 -6.98 16 10 C 0.05 1.08 3.64 36.01 0.13 1.21 16 11 C 0.52 13.29 7.27 -10.98 -0.08 13.21 16 12 O -0.59 -16.58 15.85 -14.36 -0.23 -16.81 16 13 N -0.44 -10.62 2.35 -106.54 -0.25 -10.87 16 14 C -0.34 -8.01 6.92 -14.93 -0.10 -8.11 16 15 H 0.09 1.98 7.17 -52.48 -0.38 1.60 16 16 C 0.05 1.11 3.46 -17.47 -0.06 1.05 16 17 N -0.85 -21.01 11.69 55.50 0.65 -20.36 16 18 Si 0.89 17.95 29.61 -169.99 -5.03 12.91 16 19 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 20 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 21 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 22 C 0.14 2.92 3.29 -66.81 -0.22 2.70 16 23 C -0.12 -2.42 6.42 -25.03 -0.16 -2.58 16 24 C -0.12 -1.97 6.91 -24.70 -0.17 -2.14 16 25 C -0.12 -1.83 6.83 -25.07 -0.17 -2.00 16 26 C -0.13 -2.31 6.25 -25.61 -0.16 -2.47 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.06 0.81 8.05 -51.93 -0.42 0.39 16 31 H 0.08 1.38 7.69 -51.93 -0.40 0.98 16 32 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 33 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 34 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 35 H 0.13 2.41 6.30 -52.49 -0.33 2.08 16 36 H 0.07 1.60 7.61 -51.93 -0.40 1.20 16 37 H 0.11 2.74 4.62 -51.93 -0.24 2.50 16 38 H 0.27 6.47 8.32 -40.82 -0.34 6.13 16 39 H 0.08 1.81 6.94 -51.93 -0.36 1.45 16 40 H 0.09 2.08 7.09 -51.93 -0.37 1.71 16 41 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 47 H 0.07 1.37 6.83 -51.93 -0.35 1.02 16 LS Contribution 375.00 15.07 5.65 5.65 Total: -1.00 -27.66 375.00 -10.13 -37.79 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: -7.45 Total: 11.06 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: -3.12 Total: -12.39 kcal Atomic # 7 Polarization: -31.63 SS G_CDS: 0.40 Total: -31.23 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: -0.57 Total: -23.79 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -5.03 Total: 12.91 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -27.66 -10.13 -37.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078207579.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.060 kcal (2) G-P(sol) polarization free energy of solvation -27.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds