Wall clock time and date at job start Tue Mar 31 2020 12:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 109.47068 * 2 1 4 4 C 1.38165 * 120.03041 * 265.00089 * 3 2 1 5 5 C 1.38243 * 120.05958 * 179.97438 * 4 3 2 6 6 C 1.38292 * 120.11021 * 0.02562 * 5 4 3 7 7 C 1.38122 * 120.05519 * 0.02562 * 6 5 4 8 8 C 1.38715 * 120.02633 * 84.99913 * 3 2 1 9 9 O 1.35901 * 120.05703 * 0.04266 * 8 3 2 10 10 C 1.42902 * 116.99652 * 179.97438 * 9 8 3 11 11 C 1.50709 * 109.46682 * 180.02562 * 10 9 8 12 12 O 1.21293 * 119.99813 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99775 * 180.02562 * 11 10 9 14 14 C 1.37099 * 119.99894 * 359.97438 * 13 11 10 15 15 H 1.08003 * 119.99713 * 233.93646 * 14 13 11 16 16 C 1.38953 * 120.00003 * 53.94410 * 14 13 11 17 17 N 1.31410 * 119.99715 * 22.93148 * 16 14 13 18 18 Si 1.86799 * 119.99828 * 202.93120 * 16 14 13 19 19 H 1.48499 * 109.47338 * 359.97438 * 18 16 14 20 20 H 1.48507 * 109.46798 * 120.00130 * 18 16 14 21 21 H 1.48499 * 109.47118 * 239.99524 * 18 16 14 22 22 C 1.46497 * 119.99983 * 180.02562 * 13 11 10 23 23 C 1.54267 * 110.03294 * 239.34918 * 22 13 11 24 24 C 1.54958 * 104.16103 * 217.13320 * 23 22 13 25 25 C 1.54895 * 102.77633 * 37.88684 * 24 23 22 26 26 C 1.53876 * 110.03431 * 122.12856 * 22 13 11 27 27 H 1.09003 * 109.46825 * 59.99881 * 1 2 3 28 28 H 1.09004 * 109.47105 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46756 * 300.00163 * 1 2 3 30 30 H 1.08993 * 109.47036 * 240.00187 * 2 1 3 31 31 H 1.09002 * 109.47013 * 119.99600 * 2 1 3 32 32 H 1.07999 * 119.96657 * 359.97438 * 4 3 2 33 33 H 1.07995 * 119.94586 * 180.02562 * 5 4 3 34 34 H 1.07993 * 119.97453 * 180.02562 * 6 5 4 35 35 H 1.08002 * 120.02673 * 179.72641 * 7 6 5 36 36 H 1.08997 * 109.47601 * 299.99861 * 10 9 8 37 37 H 1.09003 * 109.47010 * 60.00523 * 10 9 8 38 38 H 0.97006 * 119.99809 * 174.69118 * 17 16 14 39 39 H 1.09005 * 110.01547 * 0.74201 * 22 13 11 40 40 H 1.08996 * 110.48716 * 335.78656 * 23 22 13 41 41 H 1.09006 * 110.48207 * 98.42225 * 23 22 13 42 42 H 1.09000 * 110.72552 * 279.57735 * 24 23 22 43 43 H 1.09006 * 110.92401 * 156.29265 * 24 23 22 44 44 H 1.09000 * 110.48408 * 203.40267 * 25 24 23 45 45 H 1.09003 * 110.59648 * 80.81844 * 25 24 23 46 46 H 1.08998 * 110.03698 * 238.56824 * 26 22 13 47 47 H 1.08999 * 110.03107 * 0.02562 * 26 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3611 2.0380 -1.1916 5 6 2.8215 3.3415 -1.1924 6 6 2.9547 4.0309 -0.0010 7 6 2.6284 3.4181 1.1931 8 6 2.1650 2.1101 1.1964 9 8 1.8431 1.5050 2.3699 10 6 2.0052 2.2752 3.5627 11 6 1.6029 1.4455 4.7548 12 8 1.2160 0.3066 4.5983 13 7 1.6732 1.9690 5.9947 14 6 2.1110 3.2561 6.1716 15 1 2.9254 3.4609 6.8508 16 6 1.5070 4.2971 5.4772 17 7 0.2820 4.1594 5.0217 18 14 2.4362 5.8921 5.1911 19 1 3.7871 5.7940 5.7999 20 1 2.5668 6.1339 3.7316 21 1 1.6932 7.0165 5.8145 22 6 1.2827 1.1623 7.1536 23 6 0.1282 1.8500 7.9114 24 6 0.4331 1.5674 9.4041 25 6 1.9764 1.6841 9.4666 26 6 2.4572 1.0564 8.1420 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 2.2583 1.5015 -2.1233 33 1 3.0775 3.8223 -2.1249 34 1 3.3141 5.0493 -0.0041 35 1 2.7368 3.9554 2.1237 36 1 3.0487 2.5735 3.6637 37 1 1.3766 3.1641 3.5095 38 1 -0.1678 4.9111 4.6050 39 1 0.9765 0.1676 6.8297 40 1 0.1306 2.9227 7.7181 41 1 -0.8288 1.4124 7.6271 42 1 0.1102 0.5637 9.6804 43 1 -0.0370 2.3131 10.0454 44 1 2.3670 1.1257 10.3174 45 1 2.2798 2.7293 9.5258 46 1 2.7204 0.0103 8.2985 47 1 3.3176 1.6055 7.7597 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078207579.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:27 Heat of formation + Delta-G solvation = -71.723761 kcal Electronic energy + Delta-G solvation = -27640.051967 eV Core-core repulsion = 23980.022071 eV Total energy + Delta-G solvation = -3660.029896 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.44384 -40.62505 -38.71124 -37.83089 -36.11399 -35.05515 -33.44250 -31.14786 -30.55265 -29.49442 -29.43707 -28.01398 -26.54618 -24.82934 -23.40886 -21.99963 -21.55634 -21.40079 -21.12215 -19.10064 -18.42033 -17.61895 -17.28854 -17.09279 -16.75887 -16.53940 -16.18638 -15.91389 -15.36924 -15.29732 -15.09902 -14.67804 -14.56583 -14.32731 -14.18155 -13.88984 -13.67031 -13.40596 -13.14885 -13.06294 -12.75306 -12.66431 -12.62131 -12.42107 -12.31413 -12.09874 -11.98549 -11.89258 -11.84099 -11.74996 -11.58816 -11.41685 -11.34856 -10.86897 -10.31197 -9.79772 -9.31381 -9.04490 -8.41893 -6.28183 0.36685 0.50760 1.33451 1.42325 1.53560 1.89054 2.03496 2.27616 2.81017 2.84072 3.18047 3.78810 3.83565 3.87301 3.89738 4.04610 4.16213 4.17392 4.30326 4.32977 4.40639 4.50164 4.54285 4.57776 4.62846 4.65008 4.70365 4.76897 4.79199 4.80120 4.90906 4.95606 5.05488 5.07584 5.14440 5.20069 5.23182 5.35289 5.37316 5.46434 5.46638 5.50491 5.55462 5.60553 5.61915 5.91796 6.03983 6.46999 6.58559 6.89430 7.50077 7.96578 8.61564 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014735 B = 0.004589 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.812378 B = 6100.321651 C = 7423.133490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.072 4.072 3 C -0.133 4.133 4 C -0.077 4.077 5 C -0.154 4.154 6 C -0.089 4.089 7 C -0.228 4.228 8 C 0.104 3.896 9 O -0.319 6.319 10 C 0.065 3.935 11 C 0.494 3.506 12 O -0.630 6.630 13 N -0.441 5.441 14 C -0.352 4.352 15 H 0.094 0.906 16 C 0.019 3.981 17 N -0.879 5.879 18 Si 0.954 3.046 19 H -0.252 1.252 20 H -0.270 1.270 21 H -0.275 1.275 22 C 0.121 3.879 23 C -0.117 4.117 24 C -0.111 4.111 25 C -0.107 4.107 26 C -0.121 4.121 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.019 0.981 30 H 0.100 0.900 31 H 0.046 0.954 32 H 0.162 0.838 33 H 0.159 0.841 34 H 0.144 0.856 35 H 0.111 0.889 36 H 0.077 0.923 37 H 0.101 0.899 38 H 0.275 0.725 39 H 0.053 0.947 40 H 0.063 0.937 41 H 0.037 0.963 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.086 0.914 45 H 0.062 0.938 46 H 0.068 0.932 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.671 0.824 -5.550 7.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.109 4.109 3 C -0.133 4.133 4 C -0.095 4.095 5 C -0.172 4.172 6 C -0.107 4.107 7 C -0.247 4.247 8 C 0.059 3.941 9 O -0.232 6.232 10 C -0.013 4.013 11 C 0.283 3.717 12 O -0.518 6.518 13 N -0.160 5.160 14 C -0.479 4.479 15 H 0.111 0.889 16 C -0.186 4.186 17 N -0.514 5.514 18 Si 0.776 3.224 19 H -0.175 1.175 20 H -0.195 1.195 21 H -0.201 1.201 22 C 0.018 3.982 23 C -0.155 4.155 24 C -0.149 4.149 25 C -0.144 4.144 26 C -0.159 4.159 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.039 0.961 30 H 0.119 0.881 31 H 0.064 0.936 32 H 0.180 0.820 33 H 0.177 0.823 34 H 0.162 0.838 35 H 0.129 0.871 36 H 0.095 0.905 37 H 0.119 0.881 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.056 0.944 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.105 0.895 45 H 0.081 0.919 46 H 0.087 0.913 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.287 0.144 -5.684 7.121 hybrid contribution -0.085 1.136 0.293 1.177 sum 4.201 1.280 -5.392 6.954 Atomic orbital electron populations 1.21646 0.94942 1.01985 1.00912 1.20340 0.96188 0.91766 1.02618 1.19608 1.05214 0.97959 0.90550 1.21240 0.96439 0.95196 0.96601 1.21406 1.02248 0.94896 0.98606 1.21228 0.97559 1.00490 0.91440 1.21426 1.07837 0.94931 1.00527 1.19449 0.96209 0.92339 0.86115 1.86040 1.81989 1.42042 1.13135 1.22592 1.02054 0.94861 0.81787 1.20257 0.80096 0.85703 0.85628 1.90482 1.53723 1.21019 1.86582 1.43478 1.57323 1.12403 1.02826 1.19460 1.16917 0.81690 1.29882 0.88850 1.26326 0.94717 1.01895 0.95696 1.70093 1.10913 1.33557 1.36869 0.85468 0.79846 0.78117 0.78950 1.17510 1.19471 1.20076 1.21865 0.95401 0.94016 0.86958 1.22488 0.96016 1.01033 0.95977 1.22422 0.96416 1.01886 0.94154 1.22227 0.95189 1.00872 0.96151 1.22345 0.97335 1.00735 0.95524 0.91152 0.91295 0.96134 0.88123 0.93555 0.82032 0.82308 0.83847 0.87107 0.90475 0.88125 0.91498 0.92820 0.91815 0.94433 0.90691 0.90501 0.89504 0.91879 0.91340 0.92125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.21 9.89 71.98 0.71 -3.50 16 2 C -0.07 -2.23 5.79 29.85 0.17 -2.06 16 3 C -0.13 -4.43 5.15 -19.77 -0.10 -4.54 16 4 C -0.08 -1.94 9.68 22.25 0.22 -1.72 16 5 C -0.15 -3.63 10.04 22.28 0.22 -3.40 16 6 C -0.09 -2.55 10.04 22.25 0.22 -2.33 16 7 C -0.23 -8.49 9.04 22.37 0.20 -8.28 16 8 C 0.10 4.26 6.66 22.51 0.15 4.41 16 9 O -0.32 -15.66 8.81 -73.40 -0.65 -16.30 16 10 C 0.06 3.23 3.64 71.24 0.26 3.49 16 11 C 0.49 27.24 7.27 87.66 0.64 27.88 16 12 O -0.63 -38.28 15.85 15.97 0.25 -38.03 16 13 N -0.44 -22.32 2.35 -609.36 -1.43 -23.75 16 14 C -0.35 -17.03 6.92 84.04 0.58 -16.45 16 15 H 0.09 4.34 7.17 -2.91 -0.02 4.32 16 16 C 0.02 0.90 3.46 84.93 0.29 1.19 16 17 N -0.88 -45.51 11.69 21.66 0.25 -45.25 16 18 Si 0.95 37.06 29.61 68.60 2.03 39.10 16 19 H -0.25 -9.30 7.11 99.48 0.71 -8.59 16 20 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 21 H -0.28 -10.62 7.11 99.48 0.71 -9.91 16 22 C 0.12 5.45 3.29 45.72 0.15 5.60 16 23 C -0.12 -4.85 6.42 31.69 0.20 -4.64 16 24 C -0.11 -3.39 6.91 31.91 0.22 -3.17 16 25 C -0.11 -3.14 6.83 31.67 0.22 -2.93 16 26 C -0.12 -4.38 6.25 31.32 0.20 -4.19 16 27 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 29 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.10 2.32 8.05 -2.39 -0.02 2.30 16 31 H 0.05 1.72 7.69 -2.39 -0.02 1.70 16 32 H 0.16 2.78 8.06 -2.91 -0.02 2.76 16 33 H 0.16 2.48 8.06 -2.91 -0.02 2.46 16 34 H 0.14 3.29 8.06 -2.91 -0.02 3.27 16 35 H 0.11 4.38 6.30 -2.91 -0.02 4.36 16 36 H 0.08 3.63 7.61 -2.39 -0.02 3.61 16 37 H 0.10 5.23 4.62 -2.39 -0.01 5.22 16 38 H 0.28 13.52 8.32 -92.70 -0.77 12.75 16 39 H 0.05 2.65 6.94 -2.38 -0.02 2.63 16 40 H 0.06 3.00 7.09 -2.39 -0.02 2.98 16 41 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 42 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 44 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 46 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 47 H 0.06 2.32 6.83 -2.39 -0.02 2.31 16 Total: -1.00 -66.10 375.00 5.96 -60.13 By element: Atomic # 1 Polarization: 37.80 SS G_CDS: 0.95 Total: 38.75 kcal Atomic # 6 Polarization: -19.20 SS G_CDS: 4.56 Total: -14.64 kcal Atomic # 7 Polarization: -67.82 SS G_CDS: -1.18 Total: -69.00 kcal Atomic # 8 Polarization: -53.94 SS G_CDS: -0.39 Total: -54.33 kcal Atomic # 14 Polarization: 37.06 SS G_CDS: 2.03 Total: 39.10 kcal Total: -66.10 5.96 -60.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078207579.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.591 kcal (2) G-P(sol) polarization free energy of solvation -66.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds