Wall clock time and date at job start Tue Mar 31 2020 13:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47092 * 2 1 4 4 C 1.52994 * 109.47096 * 172.08076 * 3 2 1 5 5 C 1.53000 * 109.47198 * 178.71688 * 4 3 2 6 6 C 1.53004 * 109.46711 * 292.08437 * 3 2 1 7 7 N 1.46497 * 109.47057 * 294.99738 * 6 3 2 8 8 C 1.46500 * 119.99957 * 284.32557 * 7 6 3 9 9 C 1.50705 * 109.47146 * 270.51830 * 8 7 6 10 10 H 1.08005 * 119.99887 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00435 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99886 * 359.97438 * 11 9 8 13 13 Si 1.86793 * 120.00257 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.47259 * 59.99664 * 13 11 9 15 15 H 1.48493 * 109.47296 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47147 * 299.99784 * 13 11 9 17 17 S 1.65599 * 120.00037 * 104.32209 * 7 6 3 18 18 O 1.42097 * 104.27553 * 4.72491 * 17 7 6 19 19 O 1.42101 * 104.27726 * 132.58179 * 17 7 6 20 20 C 1.81401 * 104.44973 * 248.65268 * 17 7 6 21 21 C 1.53006 * 109.47110 * 192.62166 * 20 17 7 22 22 C 1.53775 * 113.61527 * 274.13988 * 21 20 17 23 23 C 1.53955 * 87.01907 * 220.04903 * 22 21 20 24 24 C 1.53779 * 113.61333 * 176.52903 * 21 20 17 25 25 H 1.09002 * 109.47316 * 63.74183 * 1 2 3 26 26 H 1.09002 * 109.47206 * 183.74245 * 1 2 3 27 27 H 1.09001 * 109.47161 * 303.74618 * 1 2 3 28 28 H 1.08996 * 109.46955 * 240.00290 * 2 1 3 29 29 H 1.08994 * 109.47074 * 119.99499 * 2 1 3 30 30 H 1.09002 * 109.47102 * 52.07878 * 3 2 1 31 31 H 1.08994 * 109.47150 * 298.72124 * 4 3 2 32 32 H 1.09001 * 109.47092 * 58.72085 * 4 3 2 33 33 H 1.09001 * 109.46775 * 60.00203 * 5 4 3 34 34 H 1.08998 * 109.47506 * 180.02562 * 5 4 3 35 35 H 1.09002 * 109.47104 * 300.00238 * 5 4 3 36 36 H 1.09006 * 109.46813 * 175.00463 * 6 3 2 37 37 H 1.09001 * 109.47446 * 54.99897 * 6 3 2 38 38 H 1.08991 * 109.47616 * 30.51566 * 8 7 6 39 39 H 1.09009 * 109.47176 * 150.52379 * 8 7 6 40 40 H 0.96995 * 120.00381 * 180.02562 * 12 11 9 41 41 H 1.08992 * 109.47116 * 312.62803 * 20 17 7 42 42 H 1.09001 * 109.47080 * 72.62784 * 20 17 7 43 43 H 1.09002 * 112.84485 * 45.33709 * 21 20 17 44 44 H 1.09005 * 113.61686 * 334.56514 * 22 21 20 45 45 H 1.08997 * 113.61730 * 105.46963 * 22 21 20 46 46 H 1.09004 * 113.53471 * 270.80976 * 23 22 21 47 47 H 1.09000 * 113.67005 * 139.93740 * 23 22 21 48 48 H 1.09001 * 113.61682 * 254.53014 * 24 21 20 49 49 H 1.09003 * 113.61292 * 25.35528 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5570 1.4472 0.1987 5 6 4.0712 2.8878 0.1668 6 6 1.6986 2.1041 -1.3367 7 7 2.4309 1.4341 -2.4142 8 6 3.8624 1.6878 -2.5950 9 6 4.0516 2.8608 -3.5221 10 1 3.1915 3.3664 -3.9357 11 6 5.3227 3.2878 -3.8432 12 7 6.3700 2.6718 -3.3400 13 14 5.5571 4.7421 -4.9917 14 1 4.9119 5.9446 -4.4060 15 1 7.0081 4.9992 -5.1751 16 1 4.9376 4.4391 -6.3069 17 16 1.6406 0.3900 -3.4279 18 8 0.2790 0.4802 -3.0317 19 8 2.0527 0.7854 -4.7291 20 6 2.3172 -1.2415 -3.0143 21 6 1.9043 -2.2517 -4.0868 22 6 0.5241 -2.8830 -3.8396 23 6 1.1365 -4.2130 -4.3154 24 6 2.4993 -3.6537 -3.8741 25 1 -0.3634 0.4547 -0.9216 26 1 -0.3634 -1.0255 0.0671 27 1 -0.3633 0.5709 0.8545 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 1.5656 1.9956 0.8107 31 1 3.7987 0.9963 1.1612 32 1 4.0297 0.8749 -0.5995 33 1 3.5984 3.4601 0.9650 34 1 5.1520 2.8911 0.3079 35 1 3.8294 3.3386 -0.7958 36 1 1.9821 3.1562 -1.3043 37 1 0.6272 2.0219 -1.5198 38 1 4.3167 1.9108 -1.6297 39 1 4.3365 0.8051 -3.0245 40 1 7.2642 2.9724 -3.5656 41 1 3.4046 -1.1832 -2.9694 42 1 1.9302 -1.5606 -2.0465 43 1 2.0353 -1.8708 -5.0996 44 1 0.2282 -2.8892 -2.7905 45 1 -0.2555 -2.5000 -4.4981 46 1 1.0562 -4.3690 -5.3912 47 1 0.8107 -5.0769 -3.7360 48 1 3.3120 -3.8918 -4.5603 49 1 2.7458 -3.8703 -2.8346 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092992458.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:14 Heat of formation + Delta-G solvation = -53.615518 kcal Electronic energy + Delta-G solvation = -27653.348719 eV Core-core repulsion = 24129.548007 eV Total energy + Delta-G solvation = -3523.800712 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -38.87857 -38.30938 -36.40487 -35.18685 -33.86596 -32.15734 -31.81597 -30.29807 -28.16168 -25.96169 -25.68679 -24.75978 -23.28370 -22.28132 -21.43156 -19.67849 -19.50248 -17.94271 -16.97794 -16.66358 -16.06569 -15.72255 -15.13652 -14.92391 -14.78476 -14.43904 -14.20404 -13.95148 -13.42483 -13.18721 -12.73369 -12.52904 -12.51431 -12.30551 -12.16106 -12.04914 -11.82767 -11.59458 -11.47928 -11.32853 -11.12434 -11.07548 -10.97024 -10.91664 -10.71108 -10.65619 -10.50356 -10.39981 -10.28337 -10.15482 -10.03575 -9.92422 -9.81442 -9.74615 -9.36876 -8.34898 -7.86193 -6.01829 -4.02982 0.93486 3.36919 3.40101 3.42656 3.48543 4.35119 4.43155 4.48772 4.52326 4.63597 4.77278 4.89105 5.00987 5.16694 5.24136 5.27013 5.32594 5.41091 5.59819 5.64975 5.67799 5.69942 5.73520 5.82212 5.85564 5.89199 5.89991 5.94898 6.00268 6.08392 6.13275 6.22481 6.30992 6.32307 6.38993 6.45362 6.48284 6.62936 6.67850 6.76820 6.89634 7.10180 7.29060 7.44618 7.68509 7.97896 8.27947 9.00500 9.60951 11.06058 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012173 B = 0.006000 C = 0.004741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.551831 B = 4665.174953 C = 5904.831695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.129 4.129 3 C -0.103 4.103 4 C -0.126 4.126 5 C -0.160 4.160 6 C 0.123 3.877 7 N -0.980 5.980 8 C 0.222 3.778 9 C -0.516 4.516 10 H 0.061 0.939 11 C 0.061 3.939 12 N -0.899 5.899 13 Si 0.892 3.108 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.275 1.275 17 S 2.601 3.399 18 O -0.975 6.975 19 O -0.942 6.942 20 C -0.636 4.636 21 C -0.104 4.104 22 C -0.147 4.147 23 C -0.141 4.141 24 C -0.126 4.126 25 H 0.085 0.915 26 H 0.046 0.954 27 H 0.049 0.951 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.045 0.955 32 H 0.084 0.916 33 H 0.038 0.962 34 H 0.051 0.949 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.021 0.979 40 H 0.262 0.738 41 H 0.134 0.866 42 H 0.132 0.868 43 H 0.104 0.896 44 H 0.088 0.912 45 H 0.073 0.927 46 H 0.081 0.919 47 H 0.069 0.931 48 H 0.071 0.929 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.471 -10.244 6.132 14.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.166 4.166 3 C -0.124 4.124 4 C -0.163 4.163 5 C -0.217 4.217 6 C -0.003 4.003 7 N -0.819 5.819 8 C 0.100 3.900 9 C -0.556 4.556 10 H 0.079 0.921 11 C -0.140 4.140 12 N -0.539 5.539 13 Si 0.720 3.280 14 H -0.203 1.203 15 H -0.214 1.214 16 H -0.201 1.201 17 S 2.693 3.307 18 O -0.965 6.965 19 O -0.932 6.932 20 C -0.763 4.763 21 C -0.124 4.124 22 C -0.184 4.184 23 C -0.179 4.179 24 C -0.165 4.165 25 H 0.103 0.897 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.064 0.936 32 H 0.102 0.898 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.039 0.961 40 H 0.072 0.928 41 H 0.153 0.847 42 H 0.150 0.850 43 H 0.122 0.878 44 H 0.106 0.894 45 H 0.092 0.908 46 H 0.100 0.900 47 H 0.087 0.913 48 H 0.089 0.911 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.903 -9.995 5.495 14.469 hybrid contribution 0.917 0.358 -0.192 1.003 sum -7.987 -9.637 5.304 13.593 Atomic orbital electron populations 1.22030 0.95662 1.01339 1.03527 1.21775 0.96211 0.97201 1.01394 1.21652 0.96586 0.95799 0.98330 1.21840 0.94884 0.98384 1.01205 1.21966 1.00555 0.96186 1.02942 1.21314 0.96339 0.97449 0.85235 1.57303 1.21551 1.56844 1.46188 1.19851 0.73583 0.96489 1.00037 1.21499 0.92313 1.14337 1.27447 0.92073 1.24881 0.95840 0.97114 0.96183 1.69896 0.98144 1.41117 1.44770 0.86648 0.76719 0.82839 0.81810 1.20273 1.21398 1.20091 1.05193 0.74171 0.76276 0.75043 1.93453 1.33350 1.86376 1.83356 1.93619 1.82764 1.79121 1.37728 1.30909 1.14295 1.23115 1.07971 1.22274 0.97556 0.94476 0.98051 1.23181 0.96050 0.96715 1.02459 1.22831 0.96733 0.97008 1.01309 1.22882 0.97057 0.94485 1.02032 0.89660 0.93527 0.93152 0.92736 0.92301 0.90926 0.93582 0.89788 0.94286 0.93013 0.89481 0.90125 0.89667 0.90110 0.96103 0.92829 0.84734 0.85015 0.87816 0.89373 0.90821 0.89991 0.91266 0.91050 0.89765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 9.62 37.16 0.36 -1.78 16 2 C -0.13 -1.70 5.31 -26.73 -0.14 -1.85 16 3 C -0.10 -1.50 2.26 -90.62 -0.20 -1.70 16 4 C -0.13 -1.96 4.83 -26.73 -0.13 -2.09 16 5 C -0.16 -2.69 8.32 37.16 0.31 -2.38 16 6 C 0.12 2.10 5.01 -4.04 -0.02 2.08 16 7 N -0.98 -19.28 2.13 -115.66 -0.25 -19.53 16 8 C 0.22 5.13 3.44 -5.19 -0.02 5.11 16 9 C -0.52 -13.96 8.80 -34.44 -0.30 -14.26 16 10 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 11 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 12 N -0.90 -25.18 13.29 55.43 0.74 -24.44 16 13 Si 0.89 21.74 29.54 -169.99 -5.02 16.71 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 15 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 S 2.60 49.66 4.70 -107.50 -0.51 49.15 16 18 O -0.98 -18.46 14.26 -57.54 -0.82 -19.28 16 19 O -0.94 -22.40 17.26 -57.54 -0.99 -23.39 16 20 C -0.64 -9.46 5.16 37.16 0.19 -9.27 16 21 C -0.10 -1.41 3.64 -89.81 -0.33 -1.74 16 22 C -0.15 -1.72 7.65 -25.83 -0.20 -1.92 16 23 C -0.14 -1.40 8.09 -25.83 -0.21 -1.61 16 24 C -0.13 -1.40 7.65 -25.92 -0.20 -1.60 16 25 H 0.08 1.25 4.70 -51.93 -0.24 1.00 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.74 3.31 -51.93 -0.17 0.57 16 29 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 30 H 0.07 0.94 8.13 -51.93 -0.42 0.52 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 1.46 5.24 -51.93 -0.27 1.19 16 33 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.09 1.71 4.87 -51.93 -0.25 1.46 16 36 H 0.08 1.42 6.69 -51.93 -0.35 1.08 16 37 H 0.09 1.41 5.15 -51.93 -0.27 1.14 16 38 H 0.08 1.80 2.64 -51.93 -0.14 1.66 16 39 H 0.02 0.51 7.24 -51.92 -0.38 0.14 16 40 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.13 2.01 7.38 -51.93 -0.38 1.63 16 42 H 0.13 1.68 5.48 -51.92 -0.28 1.40 16 43 H 0.10 1.49 8.00 -51.93 -0.42 1.07 16 44 H 0.09 0.97 7.92 -51.93 -0.41 0.56 16 45 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 49 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 LS Contribution 370.10 15.07 5.58 5.58 Total: -1.00 -30.83 370.10 -10.44 -41.26 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -8.18 Total: 5.37 kcal Atomic # 6 Polarization: -30.45 SS G_CDS: -0.99 Total: -31.43 kcal Atomic # 7 Polarization: -44.46 SS G_CDS: 0.49 Total: -43.97 kcal Atomic # 8 Polarization: -40.86 SS G_CDS: -1.81 Total: -42.67 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 49.66 SS G_CDS: -0.51 Total: 49.15 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.83 -10.44 -41.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092992458.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.351 kcal (2) G-P(sol) polarization free energy of solvation -30.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds