Wall clock time and date at job start Tue Mar 31 2020 13:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47092 * 2 1 4 4 C 1.52994 * 109.47096 * 172.08076 * 3 2 1 5 5 C 1.53000 * 109.47198 * 178.71688 * 4 3 2 6 6 C 1.53004 * 109.46711 * 292.08437 * 3 2 1 7 7 N 1.46497 * 109.47057 * 294.99738 * 6 3 2 8 8 C 1.46500 * 119.99957 * 284.32557 * 7 6 3 9 9 C 1.50705 * 109.47146 * 270.51830 * 8 7 6 10 10 H 1.08005 * 119.99887 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00435 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99886 * 359.97438 * 11 9 8 13 13 Si 1.86793 * 120.00257 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.47259 * 59.99664 * 13 11 9 15 15 H 1.48493 * 109.47296 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47147 * 299.99784 * 13 11 9 17 17 S 1.65599 * 120.00037 * 104.32209 * 7 6 3 18 18 O 1.42097 * 104.27553 * 4.72491 * 17 7 6 19 19 O 1.42101 * 104.27726 * 132.58179 * 17 7 6 20 20 C 1.81401 * 104.44973 * 248.65268 * 17 7 6 21 21 C 1.53006 * 109.47110 * 192.62166 * 20 17 7 22 22 C 1.53775 * 113.61527 * 274.13988 * 21 20 17 23 23 C 1.53955 * 87.01907 * 220.04903 * 22 21 20 24 24 C 1.53779 * 113.61333 * 176.52903 * 21 20 17 25 25 H 1.09002 * 109.47316 * 63.74183 * 1 2 3 26 26 H 1.09002 * 109.47206 * 183.74245 * 1 2 3 27 27 H 1.09001 * 109.47161 * 303.74618 * 1 2 3 28 28 H 1.08996 * 109.46955 * 240.00290 * 2 1 3 29 29 H 1.08994 * 109.47074 * 119.99499 * 2 1 3 30 30 H 1.09002 * 109.47102 * 52.07878 * 3 2 1 31 31 H 1.08994 * 109.47150 * 298.72124 * 4 3 2 32 32 H 1.09001 * 109.47092 * 58.72085 * 4 3 2 33 33 H 1.09001 * 109.46775 * 60.00203 * 5 4 3 34 34 H 1.08998 * 109.47506 * 180.02562 * 5 4 3 35 35 H 1.09002 * 109.47104 * 300.00238 * 5 4 3 36 36 H 1.09006 * 109.46813 * 175.00463 * 6 3 2 37 37 H 1.09001 * 109.47446 * 54.99897 * 6 3 2 38 38 H 1.08991 * 109.47616 * 30.51566 * 8 7 6 39 39 H 1.09009 * 109.47176 * 150.52379 * 8 7 6 40 40 H 0.96995 * 120.00381 * 180.02562 * 12 11 9 41 41 H 1.08992 * 109.47116 * 312.62803 * 20 17 7 42 42 H 1.09001 * 109.47080 * 72.62784 * 20 17 7 43 43 H 1.09002 * 112.84485 * 45.33709 * 21 20 17 44 44 H 1.09005 * 113.61686 * 334.56514 * 22 21 20 45 45 H 1.08997 * 113.61730 * 105.46963 * 22 21 20 46 46 H 1.09004 * 113.53471 * 270.80976 * 23 22 21 47 47 H 1.09000 * 113.67005 * 139.93740 * 23 22 21 48 48 H 1.09001 * 113.61682 * 254.53014 * 24 21 20 49 49 H 1.09003 * 113.61292 * 25.35528 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5570 1.4472 0.1987 5 6 4.0712 2.8878 0.1668 6 6 1.6986 2.1041 -1.3367 7 7 2.4309 1.4341 -2.4142 8 6 3.8624 1.6878 -2.5950 9 6 4.0516 2.8608 -3.5221 10 1 3.1915 3.3664 -3.9357 11 6 5.3227 3.2878 -3.8432 12 7 6.3700 2.6718 -3.3400 13 14 5.5571 4.7421 -4.9917 14 1 4.9119 5.9446 -4.4060 15 1 7.0081 4.9992 -5.1751 16 1 4.9376 4.4391 -6.3069 17 16 1.6406 0.3900 -3.4279 18 8 0.2790 0.4802 -3.0317 19 8 2.0527 0.7854 -4.7291 20 6 2.3172 -1.2415 -3.0143 21 6 1.9043 -2.2517 -4.0868 22 6 0.5241 -2.8830 -3.8396 23 6 1.1365 -4.2130 -4.3154 24 6 2.4993 -3.6537 -3.8741 25 1 -0.3634 0.4547 -0.9216 26 1 -0.3634 -1.0255 0.0671 27 1 -0.3633 0.5709 0.8545 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 1.5656 1.9956 0.8107 31 1 3.7987 0.9963 1.1612 32 1 4.0297 0.8749 -0.5995 33 1 3.5984 3.4601 0.9650 34 1 5.1520 2.8911 0.3079 35 1 3.8294 3.3386 -0.7958 36 1 1.9821 3.1562 -1.3043 37 1 0.6272 2.0219 -1.5198 38 1 4.3167 1.9108 -1.6297 39 1 4.3365 0.8051 -3.0245 40 1 7.2642 2.9724 -3.5656 41 1 3.4046 -1.1832 -2.9694 42 1 1.9302 -1.5606 -2.0465 43 1 2.0353 -1.8708 -5.0996 44 1 0.2282 -2.8892 -2.7905 45 1 -0.2555 -2.5000 -4.4981 46 1 1.0562 -4.3690 -5.3912 47 1 0.8107 -5.0769 -3.7360 48 1 3.3120 -3.8918 -4.5603 49 1 2.7458 -3.8703 -2.8346 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092992458.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:13 Heat of formation + Delta-G solvation = -71.601540 kcal Electronic energy + Delta-G solvation = -27654.128651 eV Core-core repulsion = 24129.548007 eV Total energy + Delta-G solvation = -3524.580645 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -39.82940 -39.64761 -38.01189 -36.81362 -35.50052 -34.00197 -33.04347 -31.47403 -29.74750 -27.56413 -26.56824 -26.10937 -24.48639 -23.91298 -22.61467 -20.95096 -20.45359 -19.47108 -18.75287 -18.27683 -17.47208 -17.18798 -16.57660 -16.26587 -16.11514 -15.97589 -15.32627 -15.22689 -14.82333 -14.65085 -14.24611 -13.88113 -13.63772 -13.38142 -13.36652 -13.27182 -13.20623 -13.07795 -12.94963 -12.88948 -12.83776 -12.79616 -12.36402 -12.28631 -12.13701 -12.04024 -11.82028 -11.72619 -11.51728 -11.49599 -11.31219 -11.23837 -11.15930 -11.04844 -10.90072 -10.39150 -9.49837 -8.12253 -6.18839 -0.55323 1.37984 1.40736 1.47947 1.91504 2.44842 2.94312 3.16808 3.28172 3.47712 3.59988 3.70178 3.87326 3.90996 4.01324 4.04003 4.13703 4.26522 4.39007 4.48670 4.56032 4.67119 4.75603 4.76384 4.82833 4.83260 4.84242 4.89926 4.97536 5.02467 5.03770 5.09626 5.21537 5.22943 5.24652 5.28156 5.32180 5.37390 5.44906 5.52236 5.62247 5.68200 5.70152 5.76410 5.81259 6.09185 6.27252 6.87641 7.46665 8.93276 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012173 B = 0.006000 C = 0.004741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.551831 B = 4665.174953 C = 5904.831695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.129 4.129 3 C -0.095 4.095 4 C -0.123 4.123 5 C -0.156 4.156 6 C 0.115 3.885 7 N -0.984 5.984 8 C 0.234 3.766 9 C -0.531 4.531 10 H 0.039 0.961 11 C 0.019 3.981 12 N -0.919 5.919 13 Si 0.938 3.062 14 H -0.269 1.269 15 H -0.276 1.276 16 H -0.285 1.285 17 S 2.591 3.409 18 O -0.978 6.978 19 O -1.003 7.003 20 C -0.606 4.606 21 C -0.127 4.127 22 C -0.151 4.151 23 C -0.130 4.130 24 C -0.121 4.121 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.046 0.954 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.038 0.962 35 H 0.053 0.947 36 H 0.066 0.934 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.004 0.996 40 H 0.264 0.736 41 H 0.134 0.866 42 H 0.162 0.838 43 H 0.086 0.914 44 H 0.100 0.900 45 H 0.068 0.932 46 H 0.087 0.913 47 H 0.091 0.909 48 H 0.074 0.926 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.135 -12.120 8.189 17.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.166 4.166 3 C -0.115 4.115 4 C -0.160 4.160 5 C -0.213 4.213 6 C -0.010 4.010 7 N -0.822 5.822 8 C 0.111 3.889 9 C -0.571 4.571 10 H 0.058 0.942 11 C -0.181 4.181 12 N -0.560 5.560 13 Si 0.765 3.235 14 H -0.194 1.194 15 H -0.201 1.201 16 H -0.211 1.211 17 S 2.689 3.311 18 O -0.968 6.968 19 O -0.993 6.993 20 C -0.738 4.738 21 C -0.147 4.147 22 C -0.189 4.189 23 C -0.168 4.168 24 C -0.160 4.160 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.065 0.935 29 H 0.101 0.899 30 H 0.114 0.886 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.107 0.893 38 H 0.111 0.889 39 H 0.022 0.978 40 H 0.073 0.927 41 H 0.153 0.847 42 H 0.179 0.821 43 H 0.104 0.896 44 H 0.119 0.881 45 H 0.087 0.913 46 H 0.105 0.895 47 H 0.110 0.890 48 H 0.093 0.907 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -9.598 -11.809 7.551 16.988 hybrid contribution 1.063 0.909 -0.822 1.622 sum -8.535 -10.900 6.729 15.393 Atomic orbital electron populations 1.22010 0.95151 1.02382 1.02962 1.21797 0.96619 0.96082 1.02108 1.21598 0.95955 0.97007 0.96957 1.21781 0.95432 0.97066 1.01759 1.21890 1.00012 0.97494 1.01922 1.21495 0.96212 0.97032 0.86256 1.57131 1.20058 1.58306 1.46728 1.19576 0.75610 0.94180 0.99496 1.21790 0.91734 1.15553 1.28019 0.94235 1.25486 0.95822 0.99252 0.97500 1.69954 0.98299 1.42091 1.45657 0.85917 0.77150 0.80783 0.79689 1.19375 1.20124 1.21140 1.05205 0.74217 0.77829 0.73858 1.93445 1.33362 1.87067 1.82929 1.93546 1.83533 1.81205 1.41033 1.30640 1.13942 1.19174 1.10006 1.22511 1.00096 0.95410 0.96675 1.23289 0.94727 0.97567 1.03297 1.22816 0.95201 0.96718 1.02033 1.22934 0.97886 0.92012 1.03122 0.92001 0.92015 0.91652 0.93547 0.89943 0.88598 0.90930 0.91968 0.91821 0.94280 0.92840 0.91548 0.89256 0.88902 0.97810 0.92670 0.84731 0.82066 0.89560 0.88122 0.91285 0.89464 0.89017 0.90740 0.88317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.75 9.62 71.98 0.69 -3.06 16 2 C -0.13 -3.01 5.31 30.60 0.16 -2.84 16 3 C -0.10 -2.55 2.26 -10.79 -0.02 -2.58 16 4 C -0.12 -3.63 4.83 30.59 0.15 -3.48 16 5 C -0.16 -5.18 8.32 71.98 0.60 -4.58 16 6 C 0.12 3.96 5.01 86.38 0.43 4.39 16 7 N -0.98 -39.69 2.13 -519.83 -1.11 -40.80 16 8 C 0.23 11.22 3.44 85.63 0.29 11.51 16 9 C -0.53 -29.92 8.80 25.60 0.23 -29.70 16 10 H 0.04 2.34 7.81 -2.91 -0.02 2.31 16 11 C 0.02 1.04 5.46 84.65 0.46 1.50 16 12 N -0.92 -52.43 13.29 21.45 0.28 -52.15 16 13 Si 0.94 45.46 29.54 68.60 2.03 47.48 16 14 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 15 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 16 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 17 S 2.59 101.42 4.70 -56.49 -0.27 101.15 16 18 O -0.98 -37.31 14.26 -127.65 -1.82 -39.13 16 19 O -1.00 -50.39 17.26 -127.65 -2.20 -52.59 16 20 C -0.61 -17.50 5.16 71.98 0.37 -17.13 16 21 C -0.13 -3.32 3.64 -10.27 -0.04 -3.36 16 22 C -0.15 -3.25 7.65 31.18 0.24 -3.01 16 23 C -0.13 -2.21 8.09 31.18 0.25 -1.95 16 24 C -0.12 -2.38 7.65 31.12 0.24 -2.15 16 25 H 0.06 1.69 4.70 -2.39 -0.01 1.68 16 26 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.05 1.14 3.31 -2.39 -0.01 1.13 16 29 H 0.08 1.58 8.13 -2.39 -0.02 1.56 16 30 H 0.10 2.17 8.13 -2.39 -0.02 2.15 16 31 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.06 2.12 5.24 -2.39 -0.01 2.10 16 33 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.05 2.14 4.87 -2.39 -0.01 2.13 16 36 H 0.07 2.42 6.69 -2.38 -0.02 2.40 16 37 H 0.09 2.96 5.15 -2.39 -0.01 2.95 16 38 H 0.09 4.25 2.64 -2.39 -0.01 4.24 16 39 H 0.00 0.20 7.24 -2.38 -0.02 0.19 16 40 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 41 H 0.13 3.97 7.38 -2.39 -0.02 3.95 16 42 H 0.16 3.70 5.48 -2.39 -0.01 3.68 16 43 H 0.09 2.55 8.00 -2.39 -0.02 2.53 16 44 H 0.10 1.90 7.92 -2.38 -0.02 1.88 16 45 H 0.07 1.52 8.14 -2.39 -0.02 1.51 16 46 H 0.09 1.38 8.14 -2.38 -0.02 1.37 16 47 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 48 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.10 1.68 8.10 -2.39 -0.02 1.66 16 Total: -1.00 -68.91 370.10 1.90 -67.01 By element: Atomic # 1 Polarization: 24.52 SS G_CDS: 0.93 Total: 25.45 kcal Atomic # 6 Polarization: -60.49 SS G_CDS: 4.05 Total: -56.43 kcal Atomic # 7 Polarization: -92.12 SS G_CDS: -0.82 Total: -92.94 kcal Atomic # 8 Polarization: -87.70 SS G_CDS: -4.02 Total: -91.72 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.48 kcal Atomic # 16 Polarization: 101.42 SS G_CDS: -0.27 Total: 101.15 kcal Total: -68.91 1.90 -67.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092992458.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.592 kcal (2) G-P(sol) polarization free energy of solvation -68.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds