Wall clock time and date at job start Tue Mar 31 2020 13:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47051 * 2 1 4 4 C 1.52997 * 109.46928 * 299.99674 * 3 2 1 5 5 C 1.52997 * 109.47299 * 59.99755 * 3 2 1 6 6 C 1.52999 * 109.47151 * 64.99985 * 5 3 2 7 7 N 1.46495 * 109.46990 * 180.02562 * 3 2 1 8 8 C 1.34775 * 120.00065 * 179.97438 * 7 3 2 9 9 O 1.21726 * 120.00073 * 359.97438 * 8 7 3 10 10 C 1.46258 * 120.00322 * 179.97438 * 8 7 3 11 11 C 1.35015 * 120.00185 * 179.97438 * 10 8 7 12 12 C 1.46966 * 119.99859 * 179.72327 * 11 10 8 13 13 C 1.40020 * 120.10099 * 359.72646 * 12 11 10 14 14 C 1.37601 * 119.89632 * 179.78802 * 13 12 11 15 15 C 1.39173 * 120.10087 * 0.48795 * 14 13 12 16 16 O 1.35568 * 119.90002 * 179.76457 * 15 14 13 17 17 C 1.34779 * 117.00070 * 174.42258 * 16 15 14 18 18 H 1.07996 * 120.00296 * 5.05680 * 17 16 15 19 19 C 1.38728 * 119.99880 * 185.05920 * 17 16 15 20 20 N 1.31504 * 119.99788 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99923 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47005 * 59.99702 * 21 19 17 23 23 H 1.48497 * 109.47002 * 179.97438 * 21 19 17 24 24 H 1.48492 * 109.47212 * 299.99834 * 21 19 17 25 25 C 1.39182 * 120.20443 * 359.74007 * 15 14 13 26 26 C 1.37597 * 120.10073 * 0.02562 * 25 15 14 27 27 H 1.09002 * 109.47181 * 300.00579 * 1 2 3 28 28 H 1.09003 * 109.46783 * 60.00099 * 1 2 3 29 29 H 1.08998 * 109.47046 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46792 * 239.99657 * 2 1 3 31 31 H 1.09003 * 109.46783 * 119.99901 * 2 1 3 32 32 H 1.08995 * 109.47559 * 300.00119 * 4 3 2 33 33 H 1.09000 * 109.47367 * 60.00253 * 4 3 2 34 34 H 1.08998 * 109.47469 * 180.02562 * 4 3 2 35 35 H 1.09006 * 109.46958 * 184.99980 * 5 3 2 36 36 H 1.09005 * 109.47274 * 305.00054 * 5 3 2 37 37 H 1.08997 * 109.47363 * 179.97438 * 6 5 3 38 38 H 1.08996 * 109.47263 * 299.99962 * 6 5 3 39 39 H 1.09005 * 109.46975 * 59.99886 * 6 5 3 40 40 H 0.97004 * 120.00076 * 359.97438 * 7 3 2 41 41 H 1.08007 * 119.99439 * 359.72456 * 10 8 7 42 42 H 1.07994 * 120.00134 * 359.72623 * 11 10 8 43 43 H 1.08001 * 120.05478 * 0.02562 * 13 12 11 44 44 H 1.08000 * 119.94685 * 180.22931 * 14 13 12 45 45 H 0.97004 * 119.99826 * 180.02562 * 20 19 17 46 46 H 1.07995 * 119.94818 * 179.97438 * 25 15 14 47 47 H 1.07996 * 120.05582 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5301 2.1637 -1.2493 5 6 1.5300 2.1638 1.2492 6 6 2.1400 1.5188 2.4953 7 7 3.5050 1.4425 -0.0006 8 6 4.1789 2.6097 -0.0012 9 8 3.5703 3.6639 -0.0018 10 6 5.6415 2.6097 -0.0013 11 6 6.3165 3.7790 -0.0025 12 6 7.7862 3.7790 0.0036 13 6 8.4884 2.5676 0.0164 14 6 9.8644 2.5725 0.0177 15 6 10.5581 3.7790 0.0165 16 8 11.9138 3.7790 0.0226 17 6 12.5262 4.9738 -0.0956 18 1 11.9413 5.8816 -0.1073 19 6 13.9079 5.0375 -0.2024 20 7 14.6201 3.9321 -0.1877 21 14 14.7566 6.6934 -0.3669 22 1 14.4498 7.5273 0.8230 23 1 16.2244 6.4899 -0.4631 24 1 14.2703 7.3794 -1.5908 25 6 9.8644 4.9855 0.0086 26 6 8.4884 4.9904 0.0025 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.8934 1.6499 -2.1392 33 1 0.4401 2.1637 -1.2493 34 1 1.8937 3.1912 -1.2496 35 1 1.8184 3.2141 1.2055 36 1 0.4436 2.0869 1.2951 37 1 1.7770 2.0330 3.3852 38 1 1.8517 0.4686 2.5390 39 1 3.2264 1.5957 2.4494 40 1 3.9900 0.6024 -0.0006 41 1 6.1814 1.6743 0.0037 42 1 5.7766 4.7142 -0.0078 43 1 7.9509 1.6309 0.0214 44 1 10.4068 1.6386 0.0238 45 1 15.5862 3.9766 -0.2620 46 1 10.4069 5.9193 0.0082 47 1 7.9509 5.9271 -0.0032 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112828367.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:50 Heat of formation + Delta-G solvation = -39.242395 kcal Electronic energy + Delta-G solvation = -25432.606590 eV Core-core repulsion = 21773.985192 eV Total energy + Delta-G solvation = -3658.621398 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.30671 -39.17759 -37.51835 -36.75553 -33.23664 -32.88022 -32.25126 -31.47351 -30.42583 -29.40126 -28.03596 -25.73081 -25.04560 -23.55173 -23.10960 -22.14569 -20.77432 -19.33805 -19.08618 -18.15061 -17.14015 -17.05351 -16.11280 -15.47965 -15.12769 -14.95515 -14.79359 -14.42011 -14.28711 -13.84227 -13.72092 -13.51737 -13.46393 -13.12347 -13.02319 -12.67851 -12.59365 -12.32835 -12.12182 -11.93281 -11.85844 -11.75246 -11.68410 -11.45560 -11.25614 -11.10492 -11.06258 -10.72785 -10.71503 -10.65109 -10.53679 -9.57344 -9.49624 -9.45075 -9.03186 -8.83517 -8.37796 -7.10451 -6.64671 -4.19663 1.10111 2.13846 2.58640 3.04197 3.05999 3.08207 3.24682 3.62937 3.82630 4.41543 4.51530 4.59996 4.74794 4.92667 4.96661 5.03570 5.05167 5.09537 5.21007 5.28288 5.31128 5.42095 5.52556 5.55168 5.56808 5.62815 5.66588 5.67700 5.68333 5.82209 5.89341 5.95193 6.01843 6.07185 6.12893 6.23644 6.27078 6.46391 6.51763 6.58605 6.65267 6.80016 6.92448 7.13621 7.24399 7.29078 7.64452 7.66098 7.80535 8.43940 8.79989 9.47090 10.51889 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.038119 B = 0.001949 C = 0.001915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.368371 B =14360.027198 C =14616.993181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.128 4.128 3 C 0.178 3.822 4 C -0.165 4.165 5 C -0.137 4.137 6 C -0.148 4.148 7 N -0.726 5.726 8 C 0.559 3.441 9 O -0.554 6.554 10 C -0.283 4.283 11 C 0.036 3.964 12 C -0.198 4.198 13 C -0.043 4.043 14 C -0.200 4.200 15 C 0.166 3.834 16 O -0.162 6.162 17 C -0.394 4.394 18 H 0.097 0.903 19 C 0.042 3.958 20 N -0.852 5.852 21 Si 0.945 3.055 22 H -0.268 1.268 23 H -0.276 1.276 24 H -0.268 1.268 25 C -0.242 4.242 26 C -0.036 4.036 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.050 0.950 38 H 0.051 0.949 39 H 0.055 0.945 40 H 0.397 0.603 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.118 0.882 44 H 0.120 0.880 45 H 0.274 0.726 46 H 0.131 0.869 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.363 -6.353 0.749 23.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C 0.092 3.908 4 C -0.223 4.223 5 C -0.175 4.175 6 C -0.206 4.206 7 N -0.377 5.377 8 C 0.351 3.649 9 O -0.435 6.435 10 C -0.304 4.304 11 C 0.016 3.984 12 C -0.199 4.199 13 C -0.062 4.062 14 C -0.219 4.219 15 C 0.110 3.890 16 O -0.063 6.063 17 C -0.469 4.469 18 H 0.114 0.886 19 C -0.165 4.165 20 N -0.485 5.485 21 Si 0.769 3.231 22 H -0.193 1.193 23 H -0.201 1.201 24 H -0.192 1.192 25 C -0.261 4.261 26 C -0.054 4.054 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.231 0.769 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.135 0.865 44 H 0.138 0.862 45 H 0.084 0.916 46 H 0.149 0.851 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -22.331 -5.872 0.754 23.102 hybrid contribution 0.755 0.301 -0.084 0.817 sum -21.576 -5.571 0.670 22.294 Atomic orbital electron populations 1.21855 0.94789 1.01817 1.02500 1.21791 0.96954 0.95289 1.02513 1.20268 0.79708 0.95156 0.95621 1.22268 1.00831 1.02827 0.96374 1.21990 0.99999 1.01954 0.93561 1.21740 1.01423 1.00087 0.97306 1.45988 1.06336 1.08668 1.76669 1.18322 0.88194 0.83256 0.75139 1.90706 1.70380 1.31373 1.51018 1.22488 0.92206 0.99404 1.16299 1.22265 0.92440 0.97752 0.85896 1.18474 0.91515 0.93587 1.16321 1.20876 0.92921 0.96633 0.95721 1.20150 0.93408 0.96233 1.12114 1.19610 0.84638 0.93413 0.91335 1.83901 1.13263 1.33491 1.75694 1.21424 0.90208 0.83108 1.52170 0.88604 1.25394 0.95391 0.99655 0.96020 1.70003 1.07238 1.27362 1.43901 0.85716 0.78288 0.79700 0.79440 1.19262 1.20087 1.19248 1.21099 0.94179 0.98471 1.12388 1.20989 0.93563 0.96399 0.94451 0.92072 0.92132 0.92564 0.91501 0.91152 0.92902 0.91968 0.90232 0.89729 0.91428 0.93118 0.93024 0.92581 0.76879 0.86094 0.85985 0.86458 0.86162 0.91556 0.85142 0.86842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.22 37.16 0.34 -0.55 16 2 C -0.13 -0.86 4.86 -26.73 -0.13 -0.99 16 3 C 0.18 1.63 0.52 -131.82 -0.07 1.56 16 4 C -0.17 -1.64 8.05 37.16 0.30 -1.34 16 5 C -0.14 -1.35 4.46 -26.73 -0.12 -1.46 16 6 C -0.15 -1.37 9.46 37.16 0.35 -1.02 16 7 N -0.73 -7.31 4.17 -49.04 -0.20 -7.52 16 8 C 0.56 7.50 6.94 -13.04 -0.09 7.41 16 9 O -0.55 -8.99 12.49 5.17 0.06 -8.93 16 10 C -0.28 -3.81 9.41 -37.51 -0.35 -4.17 16 11 C 0.04 0.55 9.45 -37.19 -0.35 0.20 16 12 C -0.20 -3.38 5.87 -105.02 -0.62 -3.99 16 13 C -0.04 -0.74 9.40 -39.15 -0.37 -1.11 16 14 C -0.20 -4.01 9.97 -39.47 -0.39 -4.40 16 15 C 0.17 3.84 6.66 -38.88 -0.26 3.58 16 16 O -0.16 -4.42 9.74 0.75 0.01 -4.41 16 17 C -0.39 -10.47 9.48 30.91 0.29 -10.18 16 18 H 0.10 2.34 5.18 -52.49 -0.27 2.07 16 19 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 20 N -0.85 -23.87 13.67 55.48 0.76 -23.12 16 21 Si 0.94 19.54 29.55 -169.99 -5.02 14.52 16 22 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 23 H -0.28 -5.59 7.11 56.52 0.40 -5.18 16 24 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 25 C -0.24 -5.03 9.14 -39.47 -0.36 -5.39 16 26 C -0.04 -0.64 9.78 -39.14 -0.38 -1.02 16 27 H 0.06 0.36 6.32 -51.93 -0.33 0.03 16 28 H 0.06 0.36 6.43 -51.93 -0.33 0.02 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.45 6.57 -51.93 -0.34 0.11 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.51 6.43 -51.93 -0.33 0.18 16 34 H 0.08 1.02 6.16 -51.93 -0.32 0.70 16 35 H 0.08 1.08 6.32 -51.93 -0.33 0.75 16 36 H 0.07 0.57 6.17 -51.93 -0.32 0.25 16 37 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.05 0.40 6.56 -51.93 -0.34 0.06 16 39 H 0.06 0.59 7.29 -51.93 -0.38 0.21 16 40 H 0.40 3.13 8.45 -40.82 -0.34 2.79 16 41 H 0.12 1.42 6.07 -52.48 -0.32 1.10 16 42 H 0.12 1.84 7.52 -52.49 -0.39 1.45 16 43 H 0.12 1.63 6.16 -52.49 -0.32 1.31 16 44 H 0.12 2.30 8.06 -52.49 -0.42 1.87 16 45 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 46 H 0.13 2.68 5.62 -52.49 -0.29 2.38 16 47 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 373.36 15.07 5.63 5.63 Total: -1.00 -29.86 373.36 -7.72 -37.58 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -6.64 Total: 8.13 kcal Atomic # 6 Polarization: -19.58 SS G_CDS: -2.30 Total: -21.88 kcal Atomic # 7 Polarization: -31.18 SS G_CDS: 0.55 Total: -30.63 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: 0.07 Total: -13.34 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.02 Total: 14.52 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.86 -7.72 -37.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112828367.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.660 kcal (2) G-P(sol) polarization free energy of solvation -29.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds