Wall clock time and date at job start Tue Mar 31 2020 13:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47051 * 2 1 4 4 C 1.52997 * 109.46928 * 299.99674 * 3 2 1 5 5 C 1.52997 * 109.47299 * 59.99755 * 3 2 1 6 6 C 1.52999 * 109.47151 * 64.99985 * 5 3 2 7 7 N 1.46495 * 109.46990 * 180.02562 * 3 2 1 8 8 C 1.34775 * 120.00065 * 179.97438 * 7 3 2 9 9 O 1.21726 * 120.00073 * 359.97438 * 8 7 3 10 10 C 1.46258 * 120.00322 * 179.97438 * 8 7 3 11 11 C 1.35015 * 120.00185 * 179.97438 * 10 8 7 12 12 C 1.46966 * 119.99859 * 179.72327 * 11 10 8 13 13 C 1.40020 * 120.10099 * 359.72646 * 12 11 10 14 14 C 1.37601 * 119.89632 * 179.78802 * 13 12 11 15 15 C 1.39173 * 120.10087 * 0.48795 * 14 13 12 16 16 O 1.35568 * 119.90002 * 179.76457 * 15 14 13 17 17 C 1.34779 * 117.00070 * 174.42258 * 16 15 14 18 18 H 1.07996 * 120.00296 * 5.05680 * 17 16 15 19 19 C 1.38728 * 119.99880 * 185.05920 * 17 16 15 20 20 N 1.31504 * 119.99788 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99923 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47005 * 59.99702 * 21 19 17 23 23 H 1.48497 * 109.47002 * 179.97438 * 21 19 17 24 24 H 1.48492 * 109.47212 * 299.99834 * 21 19 17 25 25 C 1.39182 * 120.20443 * 359.74007 * 15 14 13 26 26 C 1.37597 * 120.10073 * 0.02562 * 25 15 14 27 27 H 1.09002 * 109.47181 * 300.00579 * 1 2 3 28 28 H 1.09003 * 109.46783 * 60.00099 * 1 2 3 29 29 H 1.08998 * 109.47046 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46792 * 239.99657 * 2 1 3 31 31 H 1.09003 * 109.46783 * 119.99901 * 2 1 3 32 32 H 1.08995 * 109.47559 * 300.00119 * 4 3 2 33 33 H 1.09000 * 109.47367 * 60.00253 * 4 3 2 34 34 H 1.08998 * 109.47469 * 180.02562 * 4 3 2 35 35 H 1.09006 * 109.46958 * 184.99980 * 5 3 2 36 36 H 1.09005 * 109.47274 * 305.00054 * 5 3 2 37 37 H 1.08997 * 109.47363 * 179.97438 * 6 5 3 38 38 H 1.08996 * 109.47263 * 299.99962 * 6 5 3 39 39 H 1.09005 * 109.46975 * 59.99886 * 6 5 3 40 40 H 0.97004 * 120.00076 * 359.97438 * 7 3 2 41 41 H 1.08007 * 119.99439 * 359.72456 * 10 8 7 42 42 H 1.07994 * 120.00134 * 359.72623 * 11 10 8 43 43 H 1.08001 * 120.05478 * 0.02562 * 13 12 11 44 44 H 1.08000 * 119.94685 * 180.22931 * 14 13 12 45 45 H 0.97004 * 119.99826 * 180.02562 * 20 19 17 46 46 H 1.07995 * 119.94818 * 179.97438 * 25 15 14 47 47 H 1.07996 * 120.05582 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5301 2.1637 -1.2493 5 6 1.5300 2.1638 1.2492 6 6 2.1400 1.5188 2.4953 7 7 3.5050 1.4425 -0.0006 8 6 4.1789 2.6097 -0.0012 9 8 3.5703 3.6639 -0.0018 10 6 5.6415 2.6097 -0.0013 11 6 6.3165 3.7790 -0.0025 12 6 7.7862 3.7790 0.0036 13 6 8.4884 2.5676 0.0164 14 6 9.8644 2.5725 0.0177 15 6 10.5581 3.7790 0.0165 16 8 11.9138 3.7790 0.0226 17 6 12.5262 4.9738 -0.0956 18 1 11.9413 5.8816 -0.1073 19 6 13.9079 5.0375 -0.2024 20 7 14.6201 3.9321 -0.1877 21 14 14.7566 6.6934 -0.3669 22 1 14.4498 7.5273 0.8230 23 1 16.2244 6.4899 -0.4631 24 1 14.2703 7.3794 -1.5908 25 6 9.8644 4.9855 0.0086 26 6 8.4884 4.9904 0.0025 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.8934 1.6499 -2.1392 33 1 0.4401 2.1637 -1.2493 34 1 1.8937 3.1912 -1.2496 35 1 1.8184 3.2141 1.2055 36 1 0.4436 2.0869 1.2951 37 1 1.7770 2.0330 3.3852 38 1 1.8517 0.4686 2.5390 39 1 3.2264 1.5957 2.4494 40 1 3.9900 0.6024 -0.0006 41 1 6.1814 1.6743 0.0037 42 1 5.7766 4.7142 -0.0078 43 1 7.9509 1.6309 0.0214 44 1 10.4068 1.6386 0.0238 45 1 15.5862 3.9766 -0.2620 46 1 10.4069 5.9193 0.0082 47 1 7.9509 5.9271 -0.0032 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112828367.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:48 Heat of formation + Delta-G solvation = -56.062335 kcal Electronic energy + Delta-G solvation = -25433.335957 eV Core-core repulsion = 21773.985192 eV Total energy + Delta-G solvation = -3659.350765 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.27717 -40.80352 -38.71187 -38.09891 -34.71986 -34.08857 -33.66757 -32.16413 -31.96691 -30.28246 -29.34829 -27.51098 -25.90597 -24.35178 -24.27260 -23.65959 -22.07102 -20.57510 -20.04297 -19.65921 -18.81283 -18.22600 -17.04084 -16.47357 -16.39474 -16.18592 -15.95479 -15.88583 -15.61357 -15.52152 -14.95162 -14.66271 -14.54025 -14.28897 -14.10220 -13.75166 -13.60329 -13.40568 -13.30983 -13.16484 -12.90751 -12.77964 -12.68175 -12.64205 -12.51114 -12.22314 -12.14733 -12.09157 -12.01207 -11.40374 -11.36108 -11.21682 -11.08298 -10.54988 -10.51231 -9.93372 -9.89393 -8.66958 -8.52048 -6.18269 -0.21482 0.58210 1.16941 1.35491 1.47393 1.51283 2.15403 2.34559 2.44706 2.86984 3.18091 3.42584 3.71196 3.87894 3.94855 3.96242 4.06962 4.08649 4.31427 4.34817 4.38240 4.47787 4.51540 4.54585 4.65727 4.69951 4.74229 4.81380 4.94420 4.95072 4.96849 5.03621 5.10582 5.18509 5.19596 5.25901 5.27155 5.31938 5.32975 5.35439 5.47073 5.57388 5.61140 5.63899 5.75901 5.82968 5.97202 6.10706 6.75192 6.92102 7.42288 7.69316 8.69738 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.038119 B = 0.001949 C = 0.001915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.368371 B =14360.027198 C =14616.993181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C 0.175 3.825 4 C -0.162 4.162 5 C -0.135 4.135 6 C -0.145 4.145 7 N -0.709 5.709 8 C 0.552 3.448 9 O -0.582 6.582 10 C -0.245 4.245 11 C 0.011 3.989 12 C -0.169 4.169 13 C -0.038 4.038 14 C -0.207 4.207 15 C 0.129 3.871 16 O -0.220 6.220 17 C -0.418 4.418 18 H 0.105 0.895 19 C -0.019 4.019 20 N -0.913 5.913 21 Si 1.018 2.982 22 H -0.257 1.257 23 H -0.271 1.271 24 H -0.257 1.257 25 C -0.249 4.249 26 C -0.042 4.042 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.055 0.945 33 H 0.077 0.923 34 H 0.047 0.953 35 H 0.051 0.949 36 H 0.083 0.917 37 H 0.049 0.951 38 H 0.071 0.929 39 H 0.041 0.959 40 H 0.412 0.588 41 H 0.148 0.852 42 H 0.123 0.877 43 H 0.159 0.841 44 H 0.123 0.877 45 H 0.275 0.725 46 H 0.125 0.875 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.145 -7.515 0.751 27.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C 0.089 3.911 4 C -0.220 4.220 5 C -0.173 4.173 6 C -0.202 4.202 7 N -0.360 5.360 8 C 0.343 3.657 9 O -0.464 6.464 10 C -0.266 4.266 11 C -0.009 4.009 12 C -0.170 4.170 13 C -0.056 4.056 14 C -0.226 4.226 15 C 0.077 3.923 16 O -0.125 6.125 17 C -0.493 4.493 18 H 0.122 0.878 19 C -0.217 4.217 20 N -0.550 5.550 21 Si 0.837 3.163 22 H -0.181 1.181 23 H -0.196 1.196 24 H -0.182 1.182 25 C -0.268 4.268 26 C -0.060 4.060 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.101 0.899 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.060 0.940 40 H 0.248 0.752 41 H 0.166 0.834 42 H 0.141 0.859 43 H 0.177 0.823 44 H 0.141 0.859 45 H 0.084 0.916 46 H 0.142 0.858 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -26.198 -7.067 0.759 27.145 hybrid contribution 1.228 0.473 -0.073 1.318 sum -24.969 -6.595 0.686 25.835 Atomic orbital electron populations 1.21867 0.94028 1.02644 1.02468 1.21762 0.97520 0.93154 1.03420 1.20419 0.78862 0.96859 0.94912 1.22227 1.01913 1.00966 0.96925 1.21947 1.01079 1.00050 0.94254 1.21717 1.00319 1.01277 0.96922 1.45924 1.07049 1.08324 1.74717 1.18406 0.88256 0.83752 0.75331 1.90727 1.70880 1.32731 1.52099 1.22855 0.92545 0.99897 1.11279 1.22134 0.91055 0.98745 0.88950 1.18800 0.92692 0.93238 1.12251 1.21275 0.91681 0.98462 0.94194 1.20423 0.94779 0.95489 1.11915 1.20183 0.84034 0.95390 0.92728 1.83882 1.15120 1.33849 1.79619 1.21853 0.90960 0.83645 1.52883 0.87767 1.26613 0.95832 1.03753 0.95545 1.70141 1.07398 1.29929 1.47548 0.84650 0.76995 0.74710 0.79931 1.18125 1.19561 1.18161 1.21201 0.95461 0.97616 1.12520 1.21313 0.92438 0.98352 0.93907 0.92098 0.92215 0.91358 0.90628 0.90213 0.92548 0.90393 0.93367 0.93053 0.89909 0.93169 0.91022 0.94023 0.75171 0.83427 0.85896 0.82324 0.85929 0.91590 0.85773 0.83914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.22 71.98 0.66 -0.56 16 2 C -0.12 -1.14 4.86 30.60 0.15 -0.99 16 3 C 0.17 2.66 0.52 3.60 0.00 2.67 16 4 C -0.16 -2.85 8.05 71.98 0.58 -2.27 16 5 C -0.14 -2.34 4.46 30.59 0.14 -2.21 16 6 C -0.15 -2.27 9.46 71.98 0.68 -1.59 16 7 N -0.71 -11.77 4.17 -427.26 -1.78 -13.55 16 8 C 0.55 13.13 6.94 86.33 0.60 13.73 16 9 O -0.58 -17.92 12.49 -4.43 -0.06 -17.98 16 10 C -0.25 -5.59 9.41 23.61 0.22 -5.37 16 11 C 0.01 0.30 9.45 23.82 0.23 0.52 16 12 C -0.17 -5.31 5.87 -20.12 -0.12 -5.43 16 13 C -0.04 -1.21 9.40 22.55 0.21 -1.00 16 14 C -0.21 -8.30 9.97 22.34 0.22 -8.08 16 15 C 0.13 6.17 6.66 22.72 0.15 6.33 16 16 O -0.22 -12.78 9.74 -20.22 -0.20 -12.98 16 17 C -0.42 -23.61 9.48 67.94 0.64 -22.97 16 18 H 0.11 5.38 5.18 -2.91 -0.02 5.37 16 19 C -0.02 -1.03 5.49 84.86 0.47 -0.56 16 20 N -0.91 -54.51 13.67 21.62 0.30 -54.21 16 21 Si 1.02 41.64 29.55 68.60 2.03 43.67 16 22 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 23 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 24 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 25 C -0.25 -10.53 9.14 22.34 0.20 -10.33 16 26 C -0.04 -1.45 9.78 22.55 0.22 -1.23 16 27 H 0.06 0.50 6.32 -2.39 -0.02 0.49 16 28 H 0.06 0.50 6.43 -2.39 -0.02 0.48 16 29 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.08 0.64 6.57 -2.39 -0.02 0.62 16 32 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.08 1.10 6.43 -2.39 -0.02 1.08 16 34 H 0.05 1.17 6.16 -2.39 -0.01 1.16 16 35 H 0.05 1.26 6.32 -2.38 -0.02 1.25 16 36 H 0.08 1.17 6.17 -2.38 -0.01 1.16 16 37 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.07 0.83 6.56 -2.39 -0.02 0.82 16 39 H 0.04 0.76 7.29 -2.38 -0.02 0.75 16 40 H 0.41 4.57 8.45 -92.71 -0.78 3.79 16 41 H 0.15 2.58 6.07 -2.91 -0.02 2.56 16 42 H 0.12 3.39 7.52 -2.91 -0.02 3.37 16 43 H 0.16 3.62 6.16 -2.91 -0.02 3.60 16 44 H 0.12 4.76 8.06 -2.91 -0.02 4.74 16 45 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 46 H 0.12 5.31 5.62 -2.91 -0.02 5.29 16 47 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 Total: -1.00 -71.03 373.36 5.76 -65.27 By element: Atomic # 1 Polarization: 28.90 SS G_CDS: 0.21 Total: 29.12 kcal Atomic # 6 Polarization: -44.60 SS G_CDS: 5.26 Total: -39.34 kcal Atomic # 7 Polarization: -66.28 SS G_CDS: -1.49 Total: -67.76 kcal Atomic # 8 Polarization: -30.70 SS G_CDS: -0.25 Total: -30.95 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Total: -71.03 5.76 -65.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112828367.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.206 kcal (2) G-P(sol) polarization free energy of solvation -71.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds