Wall clock time and date at job start Tue Mar 31 2020 12:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47227 * 2 1 4 4 C 1.53041 * 109.46273 * 174.99841 * 3 2 1 5 5 C 1.53190 * 109.31418 * 181.38212 * 4 3 2 6 6 N 1.46928 * 108.77708 * 305.36656 * 5 4 3 7 7 C 1.34774 * 120.63015 * 233.58572 * 6 5 4 8 8 O 1.21280 * 119.99854 * 359.97438 * 7 6 5 9 9 C 1.50700 * 119.99925 * 179.97438 * 7 6 5 10 10 C 1.50698 * 109.47293 * 180.02562 * 9 7 6 11 11 C 1.38328 * 119.96972 * 89.99434 * 10 9 7 12 12 C 1.38275 * 120.13835 * 180.02562 * 11 10 9 13 13 C 1.38123 * 120.06977 * 0.28020 * 12 11 10 14 14 C 1.38853 * 119.93133 * 359.45069 * 13 12 11 15 15 O 1.35749 * 120.07112 * 180.27775 * 14 13 12 16 16 C 1.34833 * 116.99801 * 354.75701 * 15 14 13 17 17 H 1.07999 * 120.00283 * 5.08278 * 16 15 14 18 18 C 1.38658 * 119.99720 * 185.08053 * 16 15 14 19 19 N 1.31563 * 119.99593 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 120.00260 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47278 * 89.99704 * 20 18 16 22 22 H 1.48500 * 109.47204 * 210.00018 * 20 18 16 23 23 H 1.48505 * 109.46995 * 329.99834 * 20 18 16 24 24 C 1.38080 * 119.96292 * 270.02113 * 10 9 7 25 25 C 1.46930 * 118.73683 * 53.85744 * 6 5 4 26 26 C 1.53044 * 109.45691 * 295.06631 * 3 2 1 27 27 H 1.08994 * 109.47169 * 300.00498 * 1 2 3 28 28 H 1.09003 * 109.46706 * 60.00424 * 1 2 3 29 29 H 1.09003 * 109.47309 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47516 * 239.99920 * 2 1 3 31 31 H 1.09000 * 109.47096 * 119.99237 * 2 1 3 32 32 H 1.08999 * 109.44944 * 55.03002 * 3 2 1 33 33 H 1.09004 * 109.49732 * 61.43295 * 4 3 2 34 34 H 1.08998 * 109.52207 * 301.35347 * 4 3 2 35 35 H 1.09000 * 109.59021 * 185.57466 * 5 4 3 36 36 H 1.09000 * 109.70033 * 65.22108 * 5 4 3 37 37 H 1.09001 * 109.47395 * 59.99674 * 9 7 6 38 38 H 1.08998 * 109.47262 * 299.99770 * 9 7 6 39 39 H 1.08001 * 119.92799 * 0.02562 * 11 10 9 40 40 H 1.08000 * 119.96086 * 179.97438 * 12 11 10 41 41 H 1.07996 * 120.03245 * 179.70156 * 13 12 11 42 42 H 0.97004 * 119.99436 * 180.02562 * 19 18 16 43 43 H 1.07996 * 120.03814 * 359.95608 * 24 10 9 44 44 H 1.09001 * 109.58623 * 65.92872 * 25 6 5 45 45 H 1.09004 * 109.58636 * 186.35301 * 25 6 5 46 46 H 1.09002 * 109.49893 * 298.56147 * 26 3 2 47 47 H 1.09003 * 109.49808 * 58.66116 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5652 1.4441 0.1258 5 6 4.0693 2.8903 0.1602 6 7 3.5607 3.5966 -1.0235 7 6 4.4036 4.2470 -1.8498 8 8 5.5943 4.2533 -1.6193 9 6 3.8667 4.9665 -3.0603 10 6 5.0061 5.6059 -3.8112 11 6 5.6594 4.9015 -4.8064 12 6 6.7057 5.4846 -5.4972 13 6 7.1054 6.7709 -5.1914 14 6 6.4480 7.4826 -4.1968 15 8 6.8348 8.7490 -3.8978 16 6 7.9315 9.2185 -4.5260 17 1 8.4114 8.6254 -5.2904 18 6 8.4433 10.4628 -4.1906 19 7 9.5132 10.9210 -4.8040 20 14 7.6137 11.4883 -2.8681 21 1 8.2063 11.1640 -1.5457 22 1 7.8152 12.9302 -3.1606 23 1 6.1599 11.1861 -2.8465 24 6 5.3972 6.8942 -3.5047 25 6 2.1151 3.5856 -1.2858 26 6 1.6335 2.1269 -1.3071 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 1.6056 1.9810 0.8422 33 1 4.0013 0.9271 -0.7290 34 1 3.8554 0.9356 1.0452 35 1 5.1592 2.8977 0.1500 36 1 3.7090 3.3836 1.0629 37 1 3.1628 5.7359 -2.7431 38 1 3.3580 4.2544 -3.7102 39 1 5.3517 3.8939 -5.0442 40 1 7.2141 4.9319 -6.2734 41 1 7.9258 7.2240 -5.7280 42 1 9.8714 11.7914 -4.5691 43 1 4.8866 7.4438 -2.7278 44 1 1.5966 4.1330 -0.4986 45 1 1.9152 4.0519 -2.2506 46 1 2.0878 1.6035 -2.1484 47 1 0.5483 2.1047 -1.4073 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120140900.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:03 Heat of formation + Delta-G solvation = -54.174114 kcal Electronic energy + Delta-G solvation = -26113.926679 eV Core-core repulsion = 22454.657793 eV Total energy + Delta-G solvation = -3659.268886 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.40113 -39.10737 -38.05381 -36.54673 -34.84593 -32.59078 -32.28383 -31.27380 -30.64945 -29.37840 -27.36945 -25.56516 -25.05002 -23.66365 -22.42062 -21.69799 -20.98070 -20.37074 -19.06587 -17.65415 -17.19618 -17.04251 -15.85755 -15.68623 -15.19167 -15.11596 -14.74634 -14.67317 -14.34155 -14.17307 -13.86808 -13.70395 -13.55619 -13.44233 -13.08897 -12.74993 -12.47301 -12.40971 -12.36029 -12.17920 -12.11004 -11.67000 -11.55089 -11.50566 -11.25637 -11.03117 -10.79470 -10.75292 -10.71328 -10.68183 -10.59023 -10.10942 -9.67914 -9.33130 -8.81509 -8.74216 -8.08481 -7.29706 -6.35490 -4.01973 2.06637 2.34580 2.73581 2.95929 3.25877 3.30391 3.44329 4.29066 4.30602 4.31549 4.33404 4.49915 4.72704 4.75763 4.79677 4.87781 4.98290 5.02003 5.06949 5.14247 5.15306 5.21761 5.22806 5.35471 5.38003 5.47275 5.54355 5.59868 5.61804 5.63468 5.67961 5.73158 5.77310 5.79221 5.89384 5.91740 6.07903 6.17630 6.30995 6.42015 6.58965 6.84712 7.15767 7.27093 7.32689 7.37972 7.66751 7.86961 8.10477 8.27329 9.00173 9.63469 10.72397 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.024949 B = 0.002507 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.033982 B =11166.602899 C =11653.398621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.088 4.088 4 C -0.129 4.129 5 C 0.111 3.889 6 N -0.620 5.620 7 C 0.516 3.484 8 O -0.519 6.519 9 C -0.093 4.093 10 C -0.035 4.035 11 C -0.188 4.188 12 C -0.076 4.076 13 C -0.218 4.218 14 C 0.160 3.840 15 O -0.220 6.220 16 C -0.387 4.387 17 H 0.106 0.894 18 C 0.062 3.938 19 N -0.882 5.882 20 Si 0.905 3.095 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.260 1.260 24 C -0.174 4.174 25 C 0.106 3.894 26 C -0.132 4.132 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.063 0.937 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.110 0.890 41 H 0.132 0.868 42 H 0.278 0.722 43 H 0.113 0.887 44 H 0.068 0.932 45 H 0.088 0.912 46 H 0.068 0.932 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.526 -20.124 8.547 29.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.107 4.107 4 C -0.167 4.167 5 C -0.012 4.012 6 N -0.356 5.356 7 C 0.304 3.696 8 O -0.393 6.393 9 C -0.132 4.132 10 C -0.035 4.035 11 C -0.207 4.207 12 C -0.094 4.094 13 C -0.237 4.237 14 C 0.108 3.892 15 O -0.125 6.125 16 C -0.463 4.463 17 H 0.123 0.877 18 C -0.141 4.141 19 N -0.520 5.520 20 Si 0.731 3.269 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.184 1.184 24 C -0.193 4.193 25 C -0.017 4.017 26 C -0.170 4.170 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.111 0.889 36 H 0.082 0.918 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.122 0.878 40 H 0.128 0.872 41 H 0.150 0.850 42 H 0.088 0.912 43 H 0.131 0.869 44 H 0.086 0.914 45 H 0.106 0.894 46 H 0.087 0.913 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -18.787 -19.741 8.794 28.636 hybrid contribution -0.172 0.425 0.471 0.657 sum -18.960 -19.316 9.265 28.608 Atomic orbital electron populations 1.21825 0.95856 1.01542 1.01922 1.21566 0.95894 0.96205 1.02044 1.21182 0.95410 0.96095 0.97973 1.21973 0.95429 0.96679 1.02617 1.21532 1.01061 0.91334 0.87231 1.48155 1.07201 1.53625 1.26646 1.20756 0.86433 0.78515 0.83865 1.90752 1.15563 1.59758 1.73258 1.20620 0.97968 1.00036 0.94605 1.18678 0.95895 0.93205 0.95771 1.20407 1.00345 0.99320 1.00596 1.20732 0.95867 0.94559 0.98272 1.21289 1.04321 0.96026 1.02042 1.19002 0.92890 0.84561 0.92702 1.83567 1.43482 1.23688 1.61786 1.20763 1.02659 1.03241 1.19644 0.87661 1.24458 0.95317 0.96369 0.97931 1.69655 1.20972 1.19903 1.41475 0.86183 0.81001 0.78458 0.81260 1.19930 1.20844 1.18412 1.19933 1.00732 0.95470 1.03200 1.21844 0.80524 0.97057 1.02301 1.22116 1.01253 0.95437 0.98164 0.92788 0.92416 0.92923 0.91994 0.92003 0.91014 0.91475 0.90880 0.88939 0.91846 0.88378 0.88413 0.87805 0.87190 0.84993 0.91153 0.86882 0.91370 0.89400 0.91333 0.90508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.67 37.16 0.36 -0.38 16 2 C -0.12 -0.65 5.40 -26.73 -0.14 -0.80 16 3 C -0.09 -0.54 2.15 -90.58 -0.19 -0.73 16 4 C -0.13 -0.97 5.36 -26.61 -0.14 -1.12 16 5 C 0.11 1.11 6.43 -3.71 -0.02 1.08 16 6 N -0.62 -6.72 2.97 -172.50 -0.51 -7.23 16 7 C 0.52 7.55 7.69 -10.99 -0.08 7.47 16 8 O -0.52 -10.17 15.45 5.56 0.09 -10.08 16 9 C -0.09 -1.21 4.17 -29.04 -0.12 -1.33 16 10 C -0.03 -0.63 4.37 -104.65 -0.46 -1.08 16 11 C -0.19 -3.36 9.70 -39.53 -0.38 -3.75 16 12 C -0.08 -1.47 10.04 -39.61 -0.40 -1.87 16 13 C -0.22 -4.96 9.17 -39.40 -0.36 -5.32 16 14 C 0.16 3.91 6.65 -39.11 -0.26 3.65 16 15 O -0.22 -6.05 8.59 0.04 0.00 -6.05 16 16 C -0.39 -11.29 9.95 30.89 0.31 -10.98 16 17 H 0.11 3.13 5.44 -52.49 -0.29 2.84 16 18 C 0.06 1.79 5.49 -17.51 -0.10 1.69 16 19 N -0.88 -26.09 13.96 55.48 0.77 -25.32 16 20 Si 0.91 22.34 28.62 -169.99 -4.86 17.48 16 21 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.26 -6.41 7.11 56.52 0.40 -6.01 16 24 C -0.17 -3.67 9.65 -39.39 -0.38 -4.05 16 25 C 0.11 0.77 6.37 -3.48 -0.02 0.74 16 26 C -0.13 -0.79 5.16 -26.39 -0.14 -0.93 16 27 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 0.26 6.53 -51.93 -0.34 -0.08 16 29 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.09 1.14 7.01 -51.93 -0.36 0.78 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.10 1.08 7.87 -51.93 -0.41 0.67 16 38 H 0.10 0.99 7.65 -51.93 -0.40 0.59 16 39 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 40 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 41 H 0.13 3.13 5.64 -52.49 -0.30 2.83 16 42 H 0.28 7.61 8.31 -40.82 -0.34 7.27 16 43 H 0.11 2.25 8.06 -52.49 -0.42 1.82 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.09 0.55 5.93 -51.93 -0.31 0.24 16 46 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.08 0.36 6.50 -51.93 -0.34 0.02 16 LS Contribution 374.78 15.07 5.65 5.65 Total: -1.00 -33.62 374.78 -8.77 -42.39 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -7.37 Total: 0.86 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: -2.54 Total: -17.70 kcal Atomic # 7 Polarization: -32.81 SS G_CDS: 0.26 Total: -32.55 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: 0.09 Total: -16.13 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.86 Total: 17.48 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.62 -8.77 -42.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120140900.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.780 kcal (2) G-P(sol) polarization free energy of solvation -33.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds