Wall clock time and date at job start Tue Mar 31 2020 12:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47227 * 2 1 4 4 C 1.53041 * 109.46273 * 174.99841 * 3 2 1 5 5 C 1.53190 * 109.31418 * 181.38212 * 4 3 2 6 6 N 1.46928 * 108.77708 * 305.36656 * 5 4 3 7 7 C 1.34774 * 120.63015 * 233.58572 * 6 5 4 8 8 O 1.21280 * 119.99854 * 359.97438 * 7 6 5 9 9 C 1.50700 * 119.99925 * 179.97438 * 7 6 5 10 10 C 1.50698 * 109.47293 * 180.02562 * 9 7 6 11 11 C 1.38328 * 119.96972 * 89.99434 * 10 9 7 12 12 C 1.38275 * 120.13835 * 180.02562 * 11 10 9 13 13 C 1.38123 * 120.06977 * 0.28020 * 12 11 10 14 14 C 1.38853 * 119.93133 * 359.45069 * 13 12 11 15 15 O 1.35749 * 120.07112 * 180.27775 * 14 13 12 16 16 C 1.34833 * 116.99801 * 354.75701 * 15 14 13 17 17 H 1.07999 * 120.00283 * 5.08278 * 16 15 14 18 18 C 1.38658 * 119.99720 * 185.08053 * 16 15 14 19 19 N 1.31563 * 119.99593 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 120.00260 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47278 * 89.99704 * 20 18 16 22 22 H 1.48500 * 109.47204 * 210.00018 * 20 18 16 23 23 H 1.48505 * 109.46995 * 329.99834 * 20 18 16 24 24 C 1.38080 * 119.96292 * 270.02113 * 10 9 7 25 25 C 1.46930 * 118.73683 * 53.85744 * 6 5 4 26 26 C 1.53044 * 109.45691 * 295.06631 * 3 2 1 27 27 H 1.08994 * 109.47169 * 300.00498 * 1 2 3 28 28 H 1.09003 * 109.46706 * 60.00424 * 1 2 3 29 29 H 1.09003 * 109.47309 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47516 * 239.99920 * 2 1 3 31 31 H 1.09000 * 109.47096 * 119.99237 * 2 1 3 32 32 H 1.08999 * 109.44944 * 55.03002 * 3 2 1 33 33 H 1.09004 * 109.49732 * 61.43295 * 4 3 2 34 34 H 1.08998 * 109.52207 * 301.35347 * 4 3 2 35 35 H 1.09000 * 109.59021 * 185.57466 * 5 4 3 36 36 H 1.09000 * 109.70033 * 65.22108 * 5 4 3 37 37 H 1.09001 * 109.47395 * 59.99674 * 9 7 6 38 38 H 1.08998 * 109.47262 * 299.99770 * 9 7 6 39 39 H 1.08001 * 119.92799 * 0.02562 * 11 10 9 40 40 H 1.08000 * 119.96086 * 179.97438 * 12 11 10 41 41 H 1.07996 * 120.03245 * 179.70156 * 13 12 11 42 42 H 0.97004 * 119.99436 * 180.02562 * 19 18 16 43 43 H 1.07996 * 120.03814 * 359.95608 * 24 10 9 44 44 H 1.09001 * 109.58623 * 65.92872 * 25 6 5 45 45 H 1.09004 * 109.58636 * 186.35301 * 25 6 5 46 46 H 1.09002 * 109.49893 * 298.56147 * 26 3 2 47 47 H 1.09003 * 109.49808 * 58.66116 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5652 1.4441 0.1258 5 6 4.0693 2.8903 0.1602 6 7 3.5607 3.5966 -1.0235 7 6 4.4036 4.2470 -1.8498 8 8 5.5943 4.2533 -1.6193 9 6 3.8667 4.9665 -3.0603 10 6 5.0061 5.6059 -3.8112 11 6 5.6594 4.9015 -4.8064 12 6 6.7057 5.4846 -5.4972 13 6 7.1054 6.7709 -5.1914 14 6 6.4480 7.4826 -4.1968 15 8 6.8348 8.7490 -3.8978 16 6 7.9315 9.2185 -4.5260 17 1 8.4114 8.6254 -5.2904 18 6 8.4433 10.4628 -4.1906 19 7 9.5132 10.9210 -4.8040 20 14 7.6137 11.4883 -2.8681 21 1 8.2063 11.1640 -1.5457 22 1 7.8152 12.9302 -3.1606 23 1 6.1599 11.1861 -2.8465 24 6 5.3972 6.8942 -3.5047 25 6 2.1151 3.5856 -1.2858 26 6 1.6335 2.1269 -1.3071 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 1.6056 1.9810 0.8422 33 1 4.0013 0.9271 -0.7290 34 1 3.8554 0.9356 1.0452 35 1 5.1592 2.8977 0.1500 36 1 3.7090 3.3836 1.0629 37 1 3.1628 5.7359 -2.7431 38 1 3.3580 4.2544 -3.7102 39 1 5.3517 3.8939 -5.0442 40 1 7.2141 4.9319 -6.2734 41 1 7.9258 7.2240 -5.7280 42 1 9.8714 11.7914 -4.5691 43 1 4.8866 7.4438 -2.7278 44 1 1.5966 4.1330 -0.4986 45 1 1.9152 4.0519 -2.2506 46 1 2.0878 1.6035 -2.1484 47 1 0.5483 2.1047 -1.4073 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120140900.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:02 Heat of formation + Delta-G solvation = -73.666801 kcal Electronic energy + Delta-G solvation = -26114.771945 eV Core-core repulsion = 22454.657793 eV Total energy + Delta-G solvation = -3660.114152 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.43088 -40.72261 -39.04484 -38.16201 -35.59510 -34.49086 -33.72269 -32.16976 -31.23367 -31.04886 -28.63973 -27.22013 -26.17990 -24.27196 -23.48585 -23.08524 -22.23238 -21.19929 -20.03259 -19.60020 -18.81066 -18.15350 -16.93822 -16.86228 -16.74660 -16.23035 -15.79194 -15.66622 -15.62257 -15.29769 -15.07756 -14.86705 -14.67865 -14.51694 -14.31531 -14.15958 -13.98707 -13.77774 -13.25511 -13.06549 -12.90410 -12.85479 -12.65243 -12.51521 -12.43723 -12.36372 -12.13502 -11.96605 -11.92706 -11.50571 -11.32746 -11.26092 -11.14193 -10.93946 -10.79225 -9.67406 -9.60712 -9.07393 -8.51002 -6.23720 0.47582 0.68844 1.28487 1.33878 1.49807 1.66479 2.05673 2.26981 2.76345 3.00081 3.15170 3.65673 3.77715 3.80799 3.86645 4.01684 4.06187 4.18681 4.27422 4.35290 4.37553 4.40622 4.51422 4.54826 4.58419 4.62250 4.68429 4.69038 4.71774 4.88203 4.90515 4.96203 4.99284 5.09427 5.15654 5.19749 5.23429 5.28592 5.29817 5.38254 5.49964 5.60402 5.63753 5.65660 5.71502 5.75820 5.90478 6.23229 6.43669 6.83161 7.23462 7.57946 8.60792 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.024949 B = 0.002507 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.033982 B =11166.602899 C =11653.398621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.085 4.085 4 C -0.121 4.121 5 C 0.106 3.894 6 N -0.611 5.611 7 C 0.511 3.489 8 O -0.583 6.583 9 C -0.088 4.088 10 C -0.027 4.027 11 C -0.171 4.171 12 C -0.077 4.077 13 C -0.240 4.240 14 C 0.119 3.881 15 O -0.247 6.247 16 C -0.400 4.400 17 H 0.080 0.920 18 C 0.008 3.992 19 N -0.923 5.923 20 Si 0.971 3.029 21 H -0.270 1.270 22 H -0.263 1.263 23 H -0.262 1.262 24 C -0.181 4.181 25 C 0.097 3.903 26 C -0.127 4.127 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.054 0.946 34 H 0.082 0.918 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.126 0.874 38 H 0.140 0.860 39 H 0.146 0.854 40 H 0.141 0.859 41 H 0.108 0.892 42 H 0.285 0.715 43 H 0.121 0.879 44 H 0.084 0.916 45 H 0.106 0.894 46 H 0.062 0.938 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.498 -22.303 9.532 33.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.103 4.103 4 C -0.159 4.159 5 C -0.016 4.016 6 N -0.345 5.345 7 C 0.301 3.699 8 O -0.463 6.463 9 C -0.128 4.128 10 C -0.028 4.028 11 C -0.190 4.190 12 C -0.095 4.095 13 C -0.260 4.260 14 C 0.070 3.930 15 O -0.154 6.154 16 C -0.476 4.476 17 H 0.097 0.903 18 C -0.190 4.190 19 N -0.564 5.564 20 Si 0.793 3.207 21 H -0.195 1.195 22 H -0.187 1.187 23 H -0.186 1.186 24 C -0.200 4.200 25 C -0.024 4.024 26 C -0.165 4.165 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.073 0.927 34 H 0.101 0.899 35 H 0.080 0.920 36 H 0.094 0.906 37 H 0.144 0.856 38 H 0.158 0.842 39 H 0.164 0.836 40 H 0.158 0.842 41 H 0.126 0.874 42 H 0.094 0.906 43 H 0.139 0.861 44 H 0.102 0.898 45 H 0.124 0.876 46 H 0.081 0.919 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -22.833 -21.978 9.781 33.167 hybrid contribution 0.915 0.745 0.157 1.190 sum -21.919 -21.233 9.937 32.094 Atomic orbital electron populations 1.21815 0.95114 1.01784 1.02299 1.21528 0.96467 0.95615 1.01852 1.21168 0.93918 0.96730 0.98508 1.21912 0.96691 0.94706 1.02621 1.21605 0.99455 0.93070 0.87481 1.48237 1.08562 1.51918 1.25733 1.20999 0.85893 0.78516 0.84511 1.90742 1.18213 1.62410 1.74933 1.20733 0.96416 1.01373 0.94230 1.19227 0.96547 0.91783 0.95247 1.20991 0.98434 1.00700 0.98846 1.21108 0.96341 0.93127 0.98967 1.21319 1.04367 0.97840 1.02446 1.19586 0.94717 0.84294 0.94405 1.83504 1.43402 1.25665 1.62874 1.20713 1.03611 1.03609 1.19663 0.90284 1.25302 0.96031 0.97429 1.00252 1.69736 1.22512 1.20823 1.43339 0.85211 0.79559 0.77582 0.78298 1.19486 1.18736 1.18596 1.20260 0.99843 0.96934 1.02983 1.22206 0.77958 0.98387 1.03889 1.22105 1.02465 0.94289 0.97653 0.92532 0.91867 0.92851 0.92453 0.92044 0.90355 0.92736 0.89898 0.92044 0.90594 0.85622 0.84198 0.83593 0.84151 0.87447 0.90566 0.86089 0.89819 0.87623 0.91907 0.88371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.67 71.98 0.70 -0.28 16 2 C -0.12 -0.94 5.40 30.59 0.17 -0.77 16 3 C -0.08 -0.76 2.15 -10.77 -0.02 -0.78 16 4 C -0.12 -1.59 5.36 30.67 0.16 -1.42 16 5 C 0.11 1.97 6.43 86.36 0.56 2.52 16 6 N -0.61 -11.51 2.97 -818.06 -2.43 -13.94 16 7 C 0.51 13.72 7.69 87.66 0.67 14.40 16 8 O -0.58 -22.60 15.45 -3.03 -0.05 -22.65 16 9 C -0.09 -1.93 4.17 29.10 0.12 -1.81 16 10 C -0.03 -0.91 4.37 -19.88 -0.09 -1.00 16 11 C -0.17 -5.59 9.70 22.30 0.22 -5.38 16 12 C -0.08 -2.91 10.04 22.25 0.22 -2.69 16 13 C -0.24 -11.45 9.17 22.39 0.21 -11.24 16 14 C 0.12 6.01 6.65 22.58 0.15 6.16 16 15 O -0.25 -14.25 8.59 -22.76 -0.20 -14.45 16 16 C -0.40 -24.77 9.95 67.92 0.68 -24.10 16 17 H 0.08 5.13 5.44 -2.91 -0.02 5.12 16 18 C 0.01 0.48 5.49 84.83 0.47 0.95 16 19 N -0.92 -57.00 13.96 21.62 0.30 -56.70 16 20 Si 0.97 47.36 28.62 68.60 1.96 49.33 16 21 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 22 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 23 H -0.26 -12.67 7.11 99.48 0.71 -11.96 16 24 C -0.18 -7.58 9.65 22.39 0.22 -7.37 16 25 C 0.10 0.96 6.37 86.51 0.55 1.52 16 26 C -0.13 -0.99 5.16 30.82 0.16 -0.83 16 27 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.06 0.33 6.53 -2.39 -0.02 0.32 16 29 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.08 0.64 8.14 -2.39 -0.02 0.63 16 33 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 34 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.06 1.54 7.01 -2.39 -0.02 1.52 16 36 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.13 2.13 7.87 -2.39 -0.02 2.11 16 38 H 0.14 1.93 7.65 -2.39 -0.02 1.92 16 39 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 40 H 0.14 4.33 8.06 -2.91 -0.02 4.31 16 41 H 0.11 5.55 5.64 -2.91 -0.02 5.54 16 42 H 0.28 16.07 8.31 -92.71 -0.77 15.30 16 43 H 0.12 4.75 8.06 -2.91 -0.02 4.73 16 44 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.11 0.70 5.93 -2.39 -0.01 0.69 16 46 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 47 H 0.10 0.41 6.50 -2.39 -0.02 0.40 16 Total: -1.00 -79.42 374.78 5.68 -73.75 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: 0.95 Total: 16.79 kcal Atomic # 6 Polarization: -37.26 SS G_CDS: 5.13 Total: -32.13 kcal Atomic # 7 Polarization: -68.51 SS G_CDS: -2.12 Total: -70.63 kcal Atomic # 8 Polarization: -36.86 SS G_CDS: -0.24 Total: -37.10 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 1.96 Total: 49.33 kcal Total: -79.42 5.68 -73.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120140900.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.078 kcal (2) G-P(sol) polarization free energy of solvation -79.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds