Wall clock time and date at job start Tue Mar 31 2020 11:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47010 * 2 1 4 4 C 1.50702 * 110.05555 * 293.83590 * 3 2 1 5 5 O 1.21283 * 119.99926 * 126.40901 * 4 3 2 6 6 N 1.34772 * 120.00233 * 306.41370 * 4 3 2 7 7 C 1.46494 * 120.00633 * 174.95474 * 6 4 3 8 8 C 1.50699 * 109.47758 * 179.97438 * 7 6 4 9 9 C 1.38312 * 119.96787 * 269.72644 * 8 7 6 10 10 C 1.38280 * 120.13725 * 179.76398 * 9 8 7 11 11 C 1.38123 * 120.07101 * 0.50806 * 10 9 8 12 12 C 1.38857 * 119.92623 * 359.74782 * 11 10 9 13 13 O 1.35752 * 120.06560 * 179.97438 * 12 11 10 14 14 C 1.34821 * 117.00135 * 5.76130 * 13 12 11 15 15 H 1.08003 * 120.00256 * 5.43554 * 14 13 12 16 16 C 1.38654 * 120.00260 * 185.43541 * 14 13 12 17 17 N 1.31561 * 119.99981 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00427 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46932 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47238 * 119.99884 * 18 16 14 21 21 H 1.48502 * 109.47298 * 239.99972 * 18 16 14 22 22 C 1.38086 * 119.96007 * 89.99748 * 8 7 6 23 23 C 1.54269 * 110.03222 * 55.25363 * 3 2 1 24 24 C 1.54894 * 104.19391 * 142.89650 * 23 3 2 25 25 C 1.54891 * 102.74797 * 322.05431 * 24 23 3 26 26 C 1.53880 * 110.03267 * 172.42192 * 3 2 1 27 27 H 1.09006 * 109.46786 * 184.94419 * 1 2 3 28 28 H 1.09002 * 109.47378 * 304.94024 * 1 2 3 29 29 H 1.09001 * 109.47433 * 64.94350 * 1 2 3 30 30 H 1.08997 * 109.47380 * 239.99715 * 2 1 3 31 31 H 1.09002 * 109.46942 * 119.99557 * 2 1 3 32 32 H 0.97011 * 119.99863 * 354.95084 * 6 4 3 33 33 H 1.09003 * 109.47163 * 300.00240 * 7 6 4 34 34 H 1.09004 * 109.46707 * 59.99193 * 7 6 4 35 35 H 1.08005 * 119.93303 * 359.97438 * 9 8 7 36 36 H 1.08010 * 119.96570 * 180.25722 * 10 9 8 37 37 H 1.07992 * 120.03641 * 179.76916 * 11 10 9 38 38 H 0.96995 * 120.00193 * 180.02562 * 17 16 14 39 39 H 1.07993 * 120.03427 * 359.96002 * 22 8 7 40 40 H 1.08998 * 110.48918 * 24.21838 * 23 3 2 41 41 H 1.09003 * 110.48577 * 261.57195 * 23 3 2 42 42 H 1.09001 * 110.75515 * 80.37249 * 24 23 3 43 43 H 1.08999 * 110.75444 * 203.74221 * 24 23 3 44 44 H 1.08998 * 110.48452 * 156.62098 * 25 24 23 45 45 H 1.08999 * 110.49155 * 279.26488 * 25 24 23 46 46 H 1.08999 * 110.02902 * 121.42609 * 26 3 2 47 47 H 1.08995 * 110.06907 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6728 2.1204 -1.2949 5 8 1.0728 3.1743 -1.2788 6 7 2.0112 1.5556 -2.4708 7 6 1.5596 2.1556 -3.7286 8 6 2.0701 1.3382 -4.8871 9 6 3.2937 1.6379 -5.4581 10 6 3.7677 0.8871 -6.5182 11 6 3.0154 -0.1584 -7.0169 12 6 1.7842 -0.4585 -6.4492 13 8 1.0422 -1.4851 -6.9374 14 6 1.6079 -2.2484 -7.8940 15 1 2.6378 -2.0860 -8.1757 16 6 0.8674 -3.2419 -8.5163 17 7 -0.3870 -3.4400 -8.1729 18 14 1.6509 -4.2990 -9.8422 19 1 3.0608 -3.8777 -10.0423 20 1 1.6139 -5.7238 -9.4255 21 1 0.9009 -4.1353 -11.1134 22 6 1.3132 0.2942 -5.3811 23 6 1.4373 2.2161 1.1909 24 6 2.5862 3.1413 1.6633 25 6 3.8386 2.2464 1.4908 26 6 3.5668 1.4618 0.1907 27 1 -0.3633 -1.0239 0.0886 28 1 -0.3634 0.5886 0.8424 29 1 -0.3634 0.4352 -0.9309 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.5540 0.7517 -2.4844 33 1 0.4700 2.1767 -3.7505 34 1 1.9441 3.1728 -3.8046 35 1 3.8817 2.4580 -5.0731 36 1 4.7255 1.1210 -6.9593 37 1 3.3845 -0.7421 -7.8472 38 1 -0.9049 -4.1353 -8.6080 39 1 0.3562 0.0631 -4.9372 40 1 1.1497 1.5285 1.9862 41 1 0.5802 2.8068 0.8676 42 1 2.6539 4.0267 1.0311 43 1 2.4521 3.4208 2.7083 44 1 4.7339 2.8593 1.3864 45 1 3.9389 1.5637 2.3345 46 1 4.0421 1.9615 -0.6534 47 1 3.9451 0.4438 0.2828 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120441979.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:52 Heat of formation + Delta-G solvation = -66.225448 kcal Electronic energy + Delta-G solvation = -26429.141609 eV Core-core repulsion = 22769.350138 eV Total energy + Delta-G solvation = -3659.791471 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.66184 -39.16676 -37.57511 -36.69014 -34.57452 -33.32863 -32.35314 -30.84538 -29.28163 -28.90393 -28.04072 -25.93952 -25.11010 -23.00518 -22.11905 -21.70070 -20.88665 -20.75370 -19.21709 -17.77152 -17.17250 -16.70056 -16.04658 -15.56433 -15.25694 -15.11259 -14.92591 -14.56227 -14.40684 -14.01963 -13.72044 -13.63568 -13.51149 -13.22639 -12.98832 -12.68847 -12.42143 -12.19933 -12.12830 -11.69700 -11.58454 -11.43538 -11.36122 -11.32068 -11.15155 -10.95425 -10.87171 -10.79865 -10.73469 -10.71667 -10.62551 -10.47631 -9.62836 -9.45251 -8.94294 -8.90708 -8.25428 -7.34973 -6.51468 -4.10896 1.89087 2.24974 2.71746 3.07479 3.09562 3.15082 3.39363 3.90652 4.23312 4.39909 4.44335 4.55218 4.89224 4.93932 4.97497 5.03526 5.05174 5.13463 5.26625 5.27798 5.37316 5.48061 5.50948 5.53563 5.57910 5.68083 5.71513 5.73503 5.83081 5.84471 5.86782 5.95477 5.95787 6.04877 6.06770 6.09387 6.16929 6.23137 6.24592 6.52759 6.54228 6.79750 6.98316 7.16931 7.25136 7.33292 7.61295 7.70254 7.92743 8.30724 8.94049 9.62839 10.66378 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020011 B = 0.002716 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.920283 B =10308.241347 C =10871.617213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.110 4.110 3 C -0.082 4.082 4 C 0.526 3.474 5 O -0.544 6.544 6 N -0.720 5.720 7 C 0.168 3.832 8 C -0.072 4.072 9 C -0.195 4.195 10 C -0.076 4.076 11 C -0.226 4.226 12 C 0.151 3.849 13 O -0.176 6.176 14 C -0.392 4.392 15 H 0.092 0.908 16 C 0.040 3.960 17 N -0.860 5.860 18 Si 0.941 3.059 19 H -0.267 1.267 20 H -0.275 1.275 21 H -0.275 1.275 22 C -0.171 4.171 23 C -0.105 4.105 24 C -0.125 4.125 25 C -0.123 4.123 26 C -0.115 4.115 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.402 0.598 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.106 0.894 36 H 0.109 0.891 37 H 0.128 0.872 38 H 0.270 0.730 39 H 0.117 0.883 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.069 0.931 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.066 0.934 46 H 0.067 0.933 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.501 7.583 16.262 19.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.148 4.148 3 C -0.085 4.085 4 C 0.312 3.688 5 O -0.421 6.421 6 N -0.371 5.371 7 C 0.045 3.955 8 C -0.073 4.073 9 C -0.215 4.215 10 C -0.094 4.094 11 C -0.245 4.245 12 C 0.097 3.903 13 O -0.080 6.080 14 C -0.469 4.469 15 H 0.110 0.890 16 C -0.165 4.165 17 N -0.495 5.495 18 Si 0.766 3.234 19 H -0.191 1.191 20 H -0.201 1.201 21 H -0.201 1.201 22 C -0.191 4.191 23 C -0.142 4.142 24 C -0.162 4.162 25 C -0.160 4.160 26 C -0.153 4.153 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.237 0.763 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.124 0.876 36 H 0.127 0.873 37 H 0.145 0.855 38 H 0.080 0.920 39 H 0.136 0.864 40 H 0.090 0.910 41 H 0.101 0.899 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.086 0.914 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.614 8.091 16.230 19.304 hybrid contribution 0.723 -0.982 -0.973 1.560 sum 7.337 7.109 15.257 18.362 Atomic orbital electron populations 1.21846 0.95210 1.01995 1.02391 1.21663 0.96728 0.93564 1.02828 1.21508 0.96891 0.96480 0.93607 1.20425 0.78419 0.84879 0.85059 1.90657 1.41509 1.22476 1.87506 1.46120 1.54807 1.30829 1.05336 1.20141 0.99256 0.95698 0.80410 1.19270 0.95121 0.96245 0.96648 1.20473 0.97144 1.03054 1.00813 1.20748 0.98351 0.94667 0.95661 1.21247 0.96961 1.01879 1.04427 1.19334 0.90506 0.88215 0.92273 1.83996 1.39679 1.34723 1.49557 1.21360 0.97220 1.12660 1.15615 0.89032 1.25300 0.95493 0.97433 0.98258 1.70044 1.07564 1.31394 1.40512 0.85649 0.78974 0.79271 0.79550 1.19087 1.20090 1.20095 1.20073 1.01605 0.98432 0.98996 1.22364 0.98932 0.97668 0.95272 1.22500 0.94468 0.98387 1.00881 1.22352 0.98254 0.98267 0.97151 1.22247 0.92944 1.01362 0.98699 0.92303 0.92241 0.92578 0.91289 0.90856 0.76303 0.91029 0.91044 0.87559 0.87304 0.85464 0.91984 0.86448 0.91044 0.89867 0.91226 0.91601 0.91651 0.91490 0.91389 0.90646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 9.45 37.16 0.35 -1.27 16 2 C -0.11 -1.04 4.56 -26.73 -0.12 -1.16 16 3 C -0.08 -0.84 0.55 -154.54 -0.08 -0.92 16 4 C 0.53 7.06 5.43 -10.99 -0.06 7.01 16 5 O -0.54 -9.11 15.44 5.56 0.09 -9.02 16 6 N -0.72 -9.44 5.34 -61.47 -0.33 -9.77 16 7 C 0.17 2.47 5.80 -5.20 -0.03 2.44 16 8 C -0.07 -1.21 5.25 -104.65 -0.55 -1.76 16 9 C -0.20 -3.18 9.70 -39.54 -0.38 -3.56 16 10 C -0.08 -1.32 10.04 -39.61 -0.40 -1.72 16 11 C -0.23 -4.68 9.13 -39.39 -0.36 -5.04 16 12 C 0.15 3.48 6.65 -39.11 -0.26 3.22 16 13 O -0.18 -4.88 9.76 0.07 0.00 -4.88 16 14 C -0.39 -10.67 9.44 30.89 0.29 -10.38 16 15 H 0.09 2.30 5.30 -52.48 -0.28 2.02 16 16 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 17 N -0.86 -24.78 13.67 55.48 0.76 -24.02 16 18 Si 0.94 20.05 29.55 -169.99 -5.02 15.03 16 19 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 20 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 21 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 22 C -0.17 -3.43 9.65 -39.39 -0.38 -3.81 16 23 C -0.10 -1.04 4.41 -25.07 -0.11 -1.15 16 24 C -0.12 -1.13 6.91 -24.73 -0.17 -1.30 16 25 C -0.12 -0.98 6.83 -25.07 -0.17 -1.15 16 26 C -0.11 -1.01 6.10 -25.61 -0.16 -1.17 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.57 6.62 -51.93 -0.34 0.22 16 29 H 0.06 0.69 7.61 -51.93 -0.40 0.29 16 30 H 0.07 0.67 7.20 -51.93 -0.37 0.29 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.40 4.82 7.62 -40.82 -0.31 4.51 16 33 H 0.07 1.10 8.09 -51.93 -0.42 0.68 16 34 H 0.07 1.04 8.08 -51.93 -0.42 0.62 16 35 H 0.11 1.49 8.06 -52.48 -0.42 1.07 16 36 H 0.11 1.59 8.06 -52.48 -0.42 1.16 16 37 H 0.13 2.66 5.71 -52.49 -0.30 2.36 16 38 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 39 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16 40 H 0.07 0.60 7.37 -51.93 -0.38 0.22 16 41 H 0.08 1.00 6.91 -51.93 -0.36 0.64 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.07 0.65 7.67 -51.93 -0.40 0.25 16 47 H 0.07 0.57 7.67 -51.93 -0.40 0.17 16 LS Contribution 377.65 15.07 5.69 5.69 Total: -1.00 -30.64 377.65 -8.82 -39.46 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -7.32 Total: 8.24 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: -2.69 Total: -20.74 kcal Atomic # 7 Polarization: -34.21 SS G_CDS: 0.43 Total: -33.78 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: 0.09 Total: -13.90 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.64 -8.82 -39.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120441979.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.763 kcal (2) G-P(sol) polarization free energy of solvation -30.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds