Wall clock time and date at job start Tue Mar 31 2020 11:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47010 * 2 1 4 4 C 1.50702 * 110.05555 * 293.83590 * 3 2 1 5 5 O 1.21283 * 119.99926 * 126.40901 * 4 3 2 6 6 N 1.34772 * 120.00233 * 306.41370 * 4 3 2 7 7 C 1.46494 * 120.00633 * 174.95474 * 6 4 3 8 8 C 1.50699 * 109.47758 * 179.97438 * 7 6 4 9 9 C 1.38312 * 119.96787 * 269.72644 * 8 7 6 10 10 C 1.38280 * 120.13725 * 179.76398 * 9 8 7 11 11 C 1.38123 * 120.07101 * 0.50806 * 10 9 8 12 12 C 1.38857 * 119.92623 * 359.74782 * 11 10 9 13 13 O 1.35752 * 120.06560 * 179.97438 * 12 11 10 14 14 C 1.34821 * 117.00135 * 5.76130 * 13 12 11 15 15 H 1.08003 * 120.00256 * 5.43554 * 14 13 12 16 16 C 1.38654 * 120.00260 * 185.43541 * 14 13 12 17 17 N 1.31561 * 119.99981 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00427 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46932 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47238 * 119.99884 * 18 16 14 21 21 H 1.48502 * 109.47298 * 239.99972 * 18 16 14 22 22 C 1.38086 * 119.96007 * 89.99748 * 8 7 6 23 23 C 1.54269 * 110.03222 * 55.25363 * 3 2 1 24 24 C 1.54894 * 104.19391 * 142.89650 * 23 3 2 25 25 C 1.54891 * 102.74797 * 322.05431 * 24 23 3 26 26 C 1.53880 * 110.03267 * 172.42192 * 3 2 1 27 27 H 1.09006 * 109.46786 * 184.94419 * 1 2 3 28 28 H 1.09002 * 109.47378 * 304.94024 * 1 2 3 29 29 H 1.09001 * 109.47433 * 64.94350 * 1 2 3 30 30 H 1.08997 * 109.47380 * 239.99715 * 2 1 3 31 31 H 1.09002 * 109.46942 * 119.99557 * 2 1 3 32 32 H 0.97011 * 119.99863 * 354.95084 * 6 4 3 33 33 H 1.09003 * 109.47163 * 300.00240 * 7 6 4 34 34 H 1.09004 * 109.46707 * 59.99193 * 7 6 4 35 35 H 1.08005 * 119.93303 * 359.97438 * 9 8 7 36 36 H 1.08010 * 119.96570 * 180.25722 * 10 9 8 37 37 H 1.07992 * 120.03641 * 179.76916 * 11 10 9 38 38 H 0.96995 * 120.00193 * 180.02562 * 17 16 14 39 39 H 1.07993 * 120.03427 * 359.96002 * 22 8 7 40 40 H 1.08998 * 110.48918 * 24.21838 * 23 3 2 41 41 H 1.09003 * 110.48577 * 261.57195 * 23 3 2 42 42 H 1.09001 * 110.75515 * 80.37249 * 24 23 3 43 43 H 1.08999 * 110.75444 * 203.74221 * 24 23 3 44 44 H 1.08998 * 110.48452 * 156.62098 * 25 24 23 45 45 H 1.08999 * 110.49155 * 279.26488 * 25 24 23 46 46 H 1.08999 * 110.02902 * 121.42609 * 26 3 2 47 47 H 1.08995 * 110.06907 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6728 2.1204 -1.2949 5 8 1.0728 3.1743 -1.2788 6 7 2.0112 1.5556 -2.4708 7 6 1.5596 2.1556 -3.7286 8 6 2.0701 1.3382 -4.8871 9 6 3.2937 1.6379 -5.4581 10 6 3.7677 0.8871 -6.5182 11 6 3.0154 -0.1584 -7.0169 12 6 1.7842 -0.4585 -6.4492 13 8 1.0422 -1.4851 -6.9374 14 6 1.6079 -2.2484 -7.8940 15 1 2.6378 -2.0860 -8.1757 16 6 0.8674 -3.2419 -8.5163 17 7 -0.3870 -3.4400 -8.1729 18 14 1.6509 -4.2990 -9.8422 19 1 3.0608 -3.8777 -10.0423 20 1 1.6139 -5.7238 -9.4255 21 1 0.9009 -4.1353 -11.1134 22 6 1.3132 0.2942 -5.3811 23 6 1.4373 2.2161 1.1909 24 6 2.5862 3.1413 1.6633 25 6 3.8386 2.2464 1.4908 26 6 3.5668 1.4618 0.1907 27 1 -0.3633 -1.0239 0.0886 28 1 -0.3634 0.5886 0.8424 29 1 -0.3634 0.4352 -0.9309 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.5540 0.7517 -2.4844 33 1 0.4700 2.1767 -3.7505 34 1 1.9441 3.1728 -3.8046 35 1 3.8817 2.4580 -5.0731 36 1 4.7255 1.1210 -6.9593 37 1 3.3845 -0.7421 -7.8472 38 1 -0.9049 -4.1353 -8.6080 39 1 0.3562 0.0631 -4.9372 40 1 1.1497 1.5285 1.9862 41 1 0.5802 2.8068 0.8676 42 1 2.6539 4.0267 1.0311 43 1 2.4521 3.4208 2.7083 44 1 4.7339 2.8593 1.3864 45 1 3.9389 1.5637 2.3345 46 1 4.0421 1.9615 -0.6534 47 1 3.9451 0.4438 0.2828 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120441979.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:51 Heat of formation + Delta-G solvation = -83.877747 kcal Electronic energy + Delta-G solvation = -26429.907070 eV Core-core repulsion = 22769.350138 eV Total energy + Delta-G solvation = -3660.556932 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.66655 -40.80132 -38.78846 -38.10255 -35.84142 -34.31744 -34.10922 -32.22855 -30.81886 -29.77703 -28.88129 -27.54788 -26.73399 -23.78783 -23.35305 -23.11918 -22.34564 -21.49544 -20.33482 -19.46729 -18.79736 -17.75063 -17.15753 -16.87018 -16.58524 -16.31176 -16.13921 -15.96711 -15.58775 -15.51349 -15.09526 -14.99036 -14.41354 -14.37148 -14.14870 -13.94173 -13.79716 -13.63658 -13.31083 -13.05520 -12.97558 -12.56697 -12.40617 -12.37138 -12.29724 -12.19804 -12.08994 -11.98040 -11.88596 -11.60354 -11.45864 -11.37205 -11.24908 -10.84568 -10.69499 -10.11183 -9.76244 -9.04850 -8.47946 -6.16394 0.37015 0.68850 1.35621 1.43322 1.53632 1.64372 2.16305 2.26043 2.84581 3.16153 3.36516 3.46709 3.62885 3.69531 3.81082 4.06487 4.12579 4.23552 4.28021 4.29241 4.37978 4.38946 4.51266 4.56041 4.60830 4.65923 4.71246 4.72062 4.78151 4.86491 4.99555 4.99854 5.07515 5.09183 5.10688 5.17393 5.22825 5.23821 5.27690 5.30475 5.37432 5.45672 5.50625 5.60558 5.69159 5.70164 6.00621 6.14695 6.54317 6.97024 7.22479 7.77141 8.75418 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020011 B = 0.002716 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.920283 B =10308.241347 C =10871.617213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.108 4.108 3 C -0.077 4.077 4 C 0.524 3.476 5 O -0.581 6.581 6 N -0.715 5.715 7 C 0.174 3.826 8 C -0.058 4.058 9 C -0.170 4.170 10 C -0.068 4.068 11 C -0.234 4.234 12 C 0.114 3.886 13 O -0.232 6.232 14 C -0.411 4.411 15 H 0.103 0.897 16 C -0.023 4.023 17 N -0.921 5.921 18 Si 1.018 2.982 19 H -0.249 1.249 20 H -0.269 1.269 21 H -0.271 1.271 22 C -0.181 4.181 23 C -0.105 4.105 24 C -0.125 4.125 25 C -0.117 4.117 26 C -0.114 4.114 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.027 0.973 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.410 0.590 33 H 0.059 0.941 34 H 0.083 0.917 35 H 0.146 0.854 36 H 0.149 0.851 37 H 0.121 0.879 38 H 0.272 0.728 39 H 0.106 0.894 40 H 0.091 0.909 41 H 0.056 0.944 42 H 0.047 0.953 43 H 0.081 0.919 44 H 0.071 0.929 45 H 0.085 0.915 46 H 0.059 0.941 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.838 8.284 17.596 22.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.145 4.145 3 C -0.080 4.080 4 C 0.312 3.688 5 O -0.461 6.461 6 N -0.366 5.366 7 C 0.050 3.950 8 C -0.059 4.059 9 C -0.188 4.188 10 C -0.086 4.086 11 C -0.253 4.253 12 C 0.064 3.936 13 O -0.138 6.138 14 C -0.487 4.487 15 H 0.121 0.879 16 C -0.220 4.220 17 N -0.559 5.559 18 Si 0.837 3.163 19 H -0.173 1.173 20 H -0.194 1.194 21 H -0.196 1.196 22 C -0.201 4.201 23 C -0.143 4.143 24 C -0.163 4.163 25 C -0.155 4.155 26 C -0.151 4.151 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.046 0.954 30 H 0.084 0.916 31 H 0.118 0.882 32 H 0.246 0.754 33 H 0.078 0.922 34 H 0.101 0.899 35 H 0.164 0.836 36 H 0.167 0.833 37 H 0.139 0.861 38 H 0.081 0.919 39 H 0.124 0.876 40 H 0.109 0.891 41 H 0.075 0.925 42 H 0.066 0.934 43 H 0.099 0.901 44 H 0.090 0.910 45 H 0.104 0.896 46 H 0.078 0.922 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 9.998 8.826 17.592 22.076 hybrid contribution -0.238 -0.897 -1.191 1.510 sum 9.760 7.930 16.401 20.667 Atomic orbital electron populations 1.21855 0.96245 1.02264 1.01159 1.21696 0.95765 0.93093 1.03967 1.21548 0.98324 0.96528 0.91640 1.21055 0.77379 0.84402 0.85960 1.90643 1.43100 1.24273 1.88036 1.46032 1.54758 1.30979 1.04820 1.20005 0.98690 0.95829 0.80432 1.19428 0.94942 0.94791 0.96695 1.20972 0.96259 1.02619 0.98999 1.21158 0.99283 0.92887 0.95288 1.21377 0.96457 1.03031 1.04468 1.19840 0.91702 0.88530 0.93550 1.83958 1.41615 1.37008 1.51261 1.21842 0.97973 1.13197 1.15665 0.87945 1.26581 0.96000 0.98752 1.00716 1.70191 1.09605 1.33112 1.42996 0.84536 0.78648 0.77112 0.75976 1.17265 1.19384 1.19567 1.20187 1.01832 0.99354 0.98712 1.22374 0.98355 0.97929 0.95622 1.22492 0.94832 0.97649 1.01305 1.22356 0.97665 0.98234 0.97231 1.22285 0.91236 1.02639 0.98979 0.91620 0.91581 0.95385 0.91571 0.88227 0.75432 0.92237 0.89888 0.83618 0.83315 0.86129 0.91870 0.87596 0.89076 0.92521 0.93382 0.90051 0.91034 0.89630 0.92189 0.88723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.16 9.45 71.98 0.68 -2.48 16 2 C -0.11 -1.82 4.56 30.59 0.14 -1.68 16 3 C -0.08 -1.46 0.55 -52.20 -0.03 -1.48 16 4 C 0.52 13.71 5.43 87.66 0.48 14.18 16 5 O -0.58 -19.54 15.44 -3.04 -0.05 -19.59 16 6 N -0.71 -17.91 5.34 -466.80 -2.49 -20.40 16 7 C 0.17 4.92 5.80 85.63 0.50 5.42 16 8 C -0.06 -1.86 5.25 -19.88 -0.10 -1.96 16 9 C -0.17 -4.86 9.70 22.30 0.22 -4.64 16 10 C -0.07 -2.14 10.04 22.25 0.22 -1.91 16 11 C -0.23 -9.60 9.13 22.39 0.20 -9.39 16 12 C 0.11 5.46 6.65 22.58 0.15 5.61 16 13 O -0.23 -13.63 9.76 -22.68 -0.22 -13.85 16 14 C -0.41 -23.33 9.44 67.92 0.64 -22.69 16 15 H 0.10 5.30 5.30 -2.91 -0.02 5.29 16 16 C -0.02 -1.28 5.49 84.83 0.47 -0.82 16 17 N -0.92 -55.96 13.67 21.61 0.30 -55.66 16 18 Si 1.02 41.99 29.55 68.60 2.03 44.02 16 19 H -0.25 -9.41 7.11 99.48 0.71 -8.70 16 20 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 21 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 22 C -0.18 -7.43 9.65 22.39 0.22 -7.22 16 23 C -0.11 -1.94 4.41 31.67 0.14 -1.80 16 24 C -0.13 -2.03 6.91 31.89 0.22 -1.81 16 25 C -0.12 -1.49 6.83 31.67 0.22 -1.27 16 26 C -0.11 -1.67 6.10 31.32 0.19 -1.48 16 27 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 28 H 0.07 1.21 6.62 -2.39 -0.02 1.19 16 29 H 0.03 0.70 7.61 -2.39 -0.02 0.68 16 30 H 0.07 1.16 7.20 -2.39 -0.02 1.15 16 31 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.41 9.13 7.62 -92.70 -0.71 8.42 16 33 H 0.06 1.85 8.09 -2.39 -0.02 1.84 16 34 H 0.08 2.22 8.08 -2.38 -0.02 2.20 16 35 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 36 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 37 H 0.12 5.05 5.71 -2.91 -0.02 5.03 16 38 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 39 H 0.11 4.50 8.06 -2.91 -0.02 4.47 16 40 H 0.09 1.31 7.37 -2.39 -0.02 1.29 16 41 H 0.06 1.36 6.91 -2.39 -0.02 1.34 16 42 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.06 0.99 7.67 -2.39 -0.02 0.97 16 47 H 0.09 1.05 7.67 -2.39 -0.02 1.04 16 Total: -1.00 -72.07 377.65 4.37 -67.70 By element: Atomic # 1 Polarization: 32.96 SS G_CDS: 0.26 Total: 33.22 kcal Atomic # 6 Polarization: -39.97 SS G_CDS: 4.54 Total: -35.43 kcal Atomic # 7 Polarization: -73.87 SS G_CDS: -2.20 Total: -76.06 kcal Atomic # 8 Polarization: -33.17 SS G_CDS: -0.27 Total: -33.44 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Total: -72.07 4.37 -67.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120441979.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.182 kcal (2) G-P(sol) polarization free energy of solvation -72.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds