Wall clock time and date at job start Tue Mar 31 2020 12:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47046 * 2 1 4 4 C 1.53005 * 115.56266 * 34.30917 * 3 2 1 5 5 C 1.52999 * 117.49808 * 248.62323 * 3 2 1 6 6 C 1.53001 * 117.50135 * 179.97438 * 3 2 1 7 7 H 1.08995 * 117.52350 * 214.96814 * 6 3 2 8 8 C 1.50701 * 117.49541 * 0.02562 * 6 3 2 9 9 O 1.21289 * 120.00174 * 0.02562 * 8 6 3 10 10 N 1.34779 * 119.99692 * 180.02562 * 8 6 3 11 11 C 1.39920 * 119.99677 * 184.63257 * 10 8 6 12 12 C 1.38927 * 120.04582 * 324.66127 * 11 10 8 13 13 C 1.38121 * 120.04156 * 179.72120 * 12 11 10 14 14 C 1.38217 * 120.12355 * 0.55243 * 13 12 11 15 15 C 1.38765 * 120.08349 * 359.71961 * 14 13 12 16 16 O 1.35897 * 120.01558 * 180.02562 * 15 14 13 17 17 C 1.42894 * 117.00562 * 359.97438 * 16 15 14 18 18 C 1.52998 * 109.47340 * 179.97438 * 17 16 15 19 19 C 1.50705 * 109.47138 * 179.97438 * 18 17 16 20 20 H 1.07998 * 119.99852 * 0.02562 * 19 18 17 21 21 C 1.37879 * 119.99719 * 179.97438 * 19 18 17 22 22 N 1.31510 * 120.00520 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99737 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47189 * 90.00232 * 23 21 19 25 25 H 1.48492 * 109.47404 * 210.00410 * 23 21 19 26 26 H 1.48505 * 109.47213 * 330.00667 * 23 21 19 27 27 C 1.38617 * 119.95752 * 0.02562 * 15 14 13 28 28 H 1.08997 * 109.47090 * 299.99516 * 1 2 3 29 29 H 1.09000 * 109.47392 * 60.00316 * 1 2 3 30 30 H 1.09007 * 109.46745 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47302 * 240.00118 * 2 1 3 32 32 H 1.09000 * 109.47392 * 119.99683 * 2 1 3 33 33 H 1.08998 * 109.47377 * 205.68983 * 4 3 2 34 34 H 1.08999 * 109.46932 * 325.69099 * 4 3 2 35 35 H 1.09005 * 109.46902 * 85.68764 * 4 3 2 36 36 H 1.09002 * 117.49867 * 145.02622 * 5 3 2 37 37 H 1.08997 * 117.50286 * 359.97438 * 5 3 2 38 38 H 0.96995 * 120.00417 * 4.63391 * 10 8 6 39 39 H 1.08003 * 119.98186 * 359.97094 * 12 11 10 40 40 H 1.08005 * 119.94008 * 180.27888 * 13 12 11 41 41 H 1.08001 * 119.95869 * 179.70281 * 14 13 12 42 42 H 1.09002 * 109.47023 * 299.99767 * 17 16 15 43 43 H 1.08996 * 109.47440 * 59.99631 * 17 16 15 44 44 H 1.08999 * 109.47271 * 299.99490 * 18 17 16 45 45 H 1.09001 * 109.47164 * 60.00250 * 18 17 16 46 46 H 0.96990 * 120.00499 * 179.97438 * 22 21 19 47 47 H 1.08006 * 120.06247 * 180.02562 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.1851 2.4450 0.7780 5 6 2.7418 1.9436 -1.2638 6 6 3.5550 1.6562 0.0006 7 1 3.9428 2.5110 0.5546 8 6 4.4307 0.4297 0.0006 9 8 3.9282 -0.6742 -0.0004 10 7 5.7722 0.5596 0.0016 11 6 6.5849 -0.5751 -0.0963 12 6 6.1954 -1.7640 0.5078 13 6 6.9949 -2.8856 0.4062 14 6 8.1895 -2.8256 -0.2865 15 6 8.5863 -1.6393 -0.8871 16 8 9.7608 -1.5819 -1.5683 17 6 10.5371 -2.7803 -1.6253 18 6 11.8137 -2.5233 -2.4284 19 6 12.6326 -3.7871 -2.4880 20 1 12.2777 -4.6839 -2.0021 21 6 13.8344 -3.7985 -3.1638 22 7 14.2663 -2.7066 -3.7560 23 14 14.8491 -5.3651 -3.2383 24 1 14.4540 -6.1545 -4.4325 25 1 16.2899 -5.0178 -3.3291 26 1 14.6098 -6.1687 -2.0125 27 6 7.7840 -0.5129 -0.7918 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.3350 3.4443 0.3696 34 1 0.1338 2.1707 0.6907 35 1 1.4775 2.4339 1.8280 36 1 2.5947 2.9875 -1.5409 37 1 2.8407 1.2456 -2.0951 38 1 6.1743 1.4396 0.0702 39 1 5.2648 -1.8123 1.0538 40 1 6.6883 -3.8102 0.8727 41 1 8.8149 -3.7030 -0.3602 42 1 10.7999 -3.0914 -0.6143 43 1 9.9567 -3.5665 -2.1081 44 1 11.5506 -2.2125 -3.4395 45 1 12.3944 -1.7370 -1.9460 46 1 15.1118 -2.7146 -4.2311 47 1 8.0911 0.4112 -1.2590 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122520341.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:48 Heat of formation + Delta-G solvation = -37.176353 kcal Electronic energy + Delta-G solvation = -25307.790099 eV Core-core repulsion = 21649.258291 eV Total energy + Delta-G solvation = -3658.531808 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.98642 -39.65791 -38.25209 -36.78452 -34.63910 -33.36884 -32.53005 -30.89586 -29.78429 -29.04876 -28.49247 -25.31071 -24.66134 -24.09516 -22.59793 -22.21049 -20.78694 -20.25904 -19.25814 -18.11840 -17.46830 -16.40068 -16.05478 -15.63737 -15.49073 -15.32581 -15.26831 -15.09118 -14.56720 -14.52085 -14.24436 -13.60365 -13.56712 -13.47697 -12.97540 -12.73715 -12.56690 -12.32657 -12.22742 -12.14016 -11.84751 -11.63448 -11.47475 -11.36360 -11.18903 -10.93627 -10.78733 -10.53976 -10.47944 -10.31084 -10.09768 -9.83215 -9.69006 -9.62740 -9.30553 -8.46389 -8.32105 -7.77239 -6.10944 -4.15556 1.32143 1.69088 2.27908 2.72755 3.27278 3.33271 3.36075 3.37212 3.86805 3.96285 4.18280 4.28456 4.38877 4.41891 4.62462 4.69796 5.02029 5.04435 5.13507 5.25531 5.26733 5.30802 5.36165 5.37014 5.40178 5.41282 5.51237 5.57154 5.62814 5.67187 5.77799 5.81822 5.91952 6.03167 6.03590 6.04726 6.24922 6.32541 6.38673 6.54724 6.62760 6.73780 7.00934 7.23626 7.49613 7.63188 7.80288 7.93552 8.04676 8.23170 8.89999 9.48798 11.00611 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.035467 B = 0.001913 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.279706 B =14630.184383 C =14994.384305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.078 4.078 3 C -0.087 4.087 4 C -0.124 4.124 5 C -0.145 4.145 6 C -0.191 4.191 7 H 0.124 0.876 8 C 0.543 3.457 9 O -0.512 6.512 10 N -0.668 5.668 11 C 0.175 3.825 12 C -0.169 4.169 13 C -0.064 4.064 14 C -0.223 4.223 15 C 0.162 3.838 16 O -0.315 6.315 17 C 0.065 3.935 18 C 0.025 3.975 19 C -0.527 4.527 20 H 0.058 0.942 21 C 0.060 3.940 22 N -0.889 5.889 23 Si 0.899 3.101 24 H -0.279 1.279 25 H -0.285 1.285 26 H -0.273 1.273 27 C -0.188 4.188 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.105 0.895 37 H 0.101 0.899 38 H 0.410 0.590 39 H 0.135 0.865 40 H 0.124 0.876 41 H 0.131 0.869 42 H 0.052 0.948 43 H 0.051 0.949 44 H 0.028 0.972 45 H 0.028 0.972 46 H 0.263 0.737 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.097 10.993 9.760 29.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.115 4.115 3 C -0.087 4.087 4 C -0.181 4.181 5 C -0.182 4.182 6 C -0.212 4.212 7 H 0.142 0.858 8 C 0.331 3.669 9 O -0.387 6.387 10 N -0.312 5.312 11 C 0.082 3.918 12 C -0.189 4.189 13 C -0.083 4.083 14 C -0.242 4.242 15 C 0.115 3.885 16 O -0.228 6.228 17 C -0.009 4.009 18 C -0.012 4.012 19 C -0.565 4.565 20 H 0.077 0.923 21 C -0.142 4.142 22 N -0.528 5.528 23 Si 0.726 3.274 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.198 1.198 27 C -0.209 4.209 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.123 0.877 37 H 0.119 0.881 38 H 0.246 0.754 39 H 0.152 0.848 40 H 0.142 0.858 41 H 0.149 0.851 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.046 0.954 45 H 0.046 0.954 46 H 0.073 0.927 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -26.247 10.465 9.533 29.821 hybrid contribution 1.111 -0.477 -0.040 1.209 sum -25.136 9.988 9.493 28.665 Atomic orbital electron populations 1.21932 0.96365 1.01494 1.01445 1.21115 0.94296 0.92204 1.03922 1.21629 0.89908 0.97866 0.99316 1.21532 1.00006 0.96996 0.99559 1.23254 1.01114 1.02797 0.91021 1.22343 0.94147 0.98585 1.06138 0.85762 1.19814 0.81623 0.90140 0.75336 1.90718 1.73329 1.27137 1.47541 1.43426 1.05857 1.09105 1.72844 1.17299 0.90562 0.87475 0.96499 1.21015 1.01919 0.92316 1.03633 1.20805 0.92987 0.97858 0.96630 1.21402 0.99755 0.98287 1.04793 1.18805 0.86336 0.92929 0.90479 1.86157 1.28986 1.39471 1.68179 1.23349 0.93111 0.83699 1.00723 1.19131 0.88590 0.98128 0.95367 1.20975 1.04698 0.96222 1.34575 0.92328 1.24990 0.97526 0.96548 0.95140 1.69969 1.21230 1.27259 1.34300 0.86481 0.79304 0.83019 0.78546 1.20499 1.21049 1.19755 1.20004 0.95900 0.98953 1.06068 0.92562 0.92913 0.92781 0.90863 0.90723 0.92329 0.90733 0.91991 0.87657 0.88093 0.75407 0.84765 0.85785 0.85071 0.93010 0.93033 0.95396 0.95383 0.92710 0.85160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 8.92 37.16 0.33 -0.74 16 2 C -0.08 -0.69 4.36 -26.73 -0.12 -0.81 16 3 C -0.09 -0.63 2.47 -154.51 -0.38 -1.02 16 4 C -0.12 -0.66 9.49 37.16 0.35 -0.31 16 5 C -0.14 -0.99 9.53 -26.71 -0.25 -1.25 16 6 C -0.19 -1.44 5.91 -91.74 -0.54 -1.98 16 7 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 8 C 0.54 5.86 7.44 -10.98 -0.08 5.78 16 9 O -0.51 -7.00 10.55 5.55 0.06 -6.94 16 10 N -0.67 -7.00 5.33 -9.88 -0.05 -7.05 16 11 C 0.18 2.41 6.29 -83.72 -0.53 1.89 16 12 C -0.17 -2.42 8.69 -39.37 -0.34 -2.76 16 13 C -0.06 -0.91 10.03 -39.63 -0.40 -1.31 16 14 C -0.22 -3.59 9.04 -39.39 -0.36 -3.95 16 15 C 0.16 2.86 6.68 -39.25 -0.26 2.60 16 16 O -0.31 -6.49 10.13 -19.42 -0.20 -6.68 16 17 C 0.07 1.40 4.68 37.16 0.17 1.57 16 18 C 0.02 0.66 5.34 -27.88 -0.15 0.51 16 19 C -0.53 -14.69 9.11 -34.44 -0.31 -15.00 16 20 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 21 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 22 N -0.89 -26.43 13.29 55.43 0.74 -25.70 16 23 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 27 C -0.19 -2.87 9.90 -39.25 -0.39 -3.25 16 28 H 0.06 0.33 6.45 -51.93 -0.33 0.00 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.79 7.01 -51.93 -0.36 0.42 16 32 H 0.07 0.78 7.26 -51.93 -0.38 0.41 16 33 H 0.06 0.26 7.90 -51.93 -0.41 -0.15 16 34 H 0.07 0.37 5.58 -51.93 -0.29 0.08 16 35 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.11 0.52 8.05 -51.93 -0.42 0.11 16 37 H 0.10 0.81 8.05 -51.93 -0.42 0.39 16 38 H 0.41 3.01 8.82 -40.82 -0.36 2.65 16 39 H 0.13 1.91 6.24 -52.48 -0.33 1.58 16 40 H 0.12 1.46 8.06 -52.48 -0.42 1.03 16 41 H 0.13 2.06 6.29 -52.49 -0.33 1.73 16 42 H 0.05 1.06 7.66 -51.93 -0.40 0.66 16 43 H 0.05 1.06 7.66 -51.93 -0.40 0.66 16 44 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 46 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 47 H 0.13 1.79 8.06 -52.48 -0.42 1.37 16 LS Contribution 381.50 15.07 5.75 5.75 Total: -1.00 -31.84 381.50 -9.43 -41.27 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -7.35 Total: 1.51 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: -3.35 Total: -18.43 kcal Atomic # 7 Polarization: -33.43 SS G_CDS: 0.68 Total: -32.75 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -0.14 Total: -13.62 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.84 -9.43 -41.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122520341.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.092 kcal (2) G-P(sol) polarization free energy of solvation -31.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds