Wall clock time and date at job start Tue Mar 31 2020 12:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47046 * 2 1 4 4 C 1.53005 * 115.56266 * 34.30917 * 3 2 1 5 5 C 1.52999 * 117.49808 * 248.62323 * 3 2 1 6 6 C 1.53001 * 117.50135 * 179.97438 * 3 2 1 7 7 H 1.08995 * 117.52350 * 214.96814 * 6 3 2 8 8 C 1.50701 * 117.49541 * 0.02562 * 6 3 2 9 9 O 1.21289 * 120.00174 * 0.02562 * 8 6 3 10 10 N 1.34779 * 119.99692 * 180.02562 * 8 6 3 11 11 C 1.39920 * 119.99677 * 184.63257 * 10 8 6 12 12 C 1.38927 * 120.04582 * 324.66127 * 11 10 8 13 13 C 1.38121 * 120.04156 * 179.72120 * 12 11 10 14 14 C 1.38217 * 120.12355 * 0.55243 * 13 12 11 15 15 C 1.38765 * 120.08349 * 359.71961 * 14 13 12 16 16 O 1.35897 * 120.01558 * 180.02562 * 15 14 13 17 17 C 1.42894 * 117.00562 * 359.97438 * 16 15 14 18 18 C 1.52998 * 109.47340 * 179.97438 * 17 16 15 19 19 C 1.50705 * 109.47138 * 179.97438 * 18 17 16 20 20 H 1.07998 * 119.99852 * 0.02562 * 19 18 17 21 21 C 1.37879 * 119.99719 * 179.97438 * 19 18 17 22 22 N 1.31510 * 120.00520 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99737 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47189 * 90.00232 * 23 21 19 25 25 H 1.48492 * 109.47404 * 210.00410 * 23 21 19 26 26 H 1.48505 * 109.47213 * 330.00667 * 23 21 19 27 27 C 1.38617 * 119.95752 * 0.02562 * 15 14 13 28 28 H 1.08997 * 109.47090 * 299.99516 * 1 2 3 29 29 H 1.09000 * 109.47392 * 60.00316 * 1 2 3 30 30 H 1.09007 * 109.46745 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47302 * 240.00118 * 2 1 3 32 32 H 1.09000 * 109.47392 * 119.99683 * 2 1 3 33 33 H 1.08998 * 109.47377 * 205.68983 * 4 3 2 34 34 H 1.08999 * 109.46932 * 325.69099 * 4 3 2 35 35 H 1.09005 * 109.46902 * 85.68764 * 4 3 2 36 36 H 1.09002 * 117.49867 * 145.02622 * 5 3 2 37 37 H 1.08997 * 117.50286 * 359.97438 * 5 3 2 38 38 H 0.96995 * 120.00417 * 4.63391 * 10 8 6 39 39 H 1.08003 * 119.98186 * 359.97094 * 12 11 10 40 40 H 1.08005 * 119.94008 * 180.27888 * 13 12 11 41 41 H 1.08001 * 119.95869 * 179.70281 * 14 13 12 42 42 H 1.09002 * 109.47023 * 299.99767 * 17 16 15 43 43 H 1.08996 * 109.47440 * 59.99631 * 17 16 15 44 44 H 1.08999 * 109.47271 * 299.99490 * 18 17 16 45 45 H 1.09001 * 109.47164 * 60.00250 * 18 17 16 46 46 H 0.96990 * 120.00499 * 179.97438 * 22 21 19 47 47 H 1.08006 * 120.06247 * 180.02562 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.1851 2.4450 0.7780 5 6 2.7418 1.9436 -1.2638 6 6 3.5550 1.6562 0.0006 7 1 3.9428 2.5110 0.5546 8 6 4.4307 0.4297 0.0006 9 8 3.9282 -0.6742 -0.0004 10 7 5.7722 0.5596 0.0016 11 6 6.5849 -0.5751 -0.0963 12 6 6.1954 -1.7640 0.5078 13 6 6.9949 -2.8856 0.4062 14 6 8.1895 -2.8256 -0.2865 15 6 8.5863 -1.6393 -0.8871 16 8 9.7608 -1.5819 -1.5683 17 6 10.5371 -2.7803 -1.6253 18 6 11.8137 -2.5233 -2.4284 19 6 12.6326 -3.7871 -2.4880 20 1 12.2777 -4.6839 -2.0021 21 6 13.8344 -3.7985 -3.1638 22 7 14.2663 -2.7066 -3.7560 23 14 14.8491 -5.3651 -3.2383 24 1 14.4540 -6.1545 -4.4325 25 1 16.2899 -5.0178 -3.3291 26 1 14.6098 -6.1687 -2.0125 27 6 7.7840 -0.5129 -0.7918 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.3350 3.4443 0.3696 34 1 0.1338 2.1707 0.6907 35 1 1.4775 2.4339 1.8280 36 1 2.5947 2.9875 -1.5409 37 1 2.8407 1.2456 -2.0951 38 1 6.1743 1.4396 0.0702 39 1 5.2648 -1.8123 1.0538 40 1 6.6883 -3.8102 0.8727 41 1 8.8149 -3.7030 -0.3602 42 1 10.7999 -3.0914 -0.6143 43 1 9.9567 -3.5665 -2.1081 44 1 11.5506 -2.2125 -3.4395 45 1 12.3944 -1.7370 -1.9460 46 1 15.1118 -2.7146 -4.2311 47 1 8.0911 0.4112 -1.2590 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122520341.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:47 Heat of formation + Delta-G solvation = -54.519560 kcal Electronic energy + Delta-G solvation = -25308.542157 eV Core-core repulsion = 21649.258291 eV Total energy + Delta-G solvation = -3659.283866 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -41.89920 -40.86537 -39.23245 -37.89239 -35.74168 -35.37938 -33.16380 -32.61345 -31.15031 -30.26903 -29.04835 -27.06950 -25.69854 -24.69280 -23.84656 -23.60481 -22.20199 -21.30413 -19.95475 -19.43003 -18.38307 -18.23096 -17.20719 -16.98383 -16.87431 -16.70838 -16.40748 -16.14002 -15.80850 -15.33852 -15.06343 -14.62178 -14.44497 -14.37126 -14.29381 -14.23643 -14.00840 -13.35069 -13.25350 -13.13328 -12.84280 -12.78932 -12.67582 -12.56579 -12.54869 -12.13696 -12.03990 -11.81254 -11.74064 -11.58992 -11.40246 -11.23991 -11.05806 -10.80241 -10.62033 -10.46393 -9.49351 -9.03286 -8.26744 -6.40166 0.18042 0.44994 1.40810 1.41804 1.43073 1.54183 1.81687 2.31332 2.55118 2.70812 2.83216 3.07749 3.52639 3.67790 3.82218 3.85668 4.02459 4.13605 4.14812 4.18745 4.27095 4.27554 4.43465 4.47004 4.51756 4.59842 4.67044 4.73824 4.77503 4.81999 4.89281 4.98324 5.05915 5.15710 5.21339 5.23572 5.25848 5.31085 5.33370 5.37856 5.42972 5.47299 5.49601 5.62395 5.68327 5.87996 6.07386 6.38626 6.51309 6.74458 7.08690 7.29824 8.86255 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.035467 B = 0.001913 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.279706 B =14630.184383 C =14994.384305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.076 4.076 3 C -0.091 4.091 4 C -0.120 4.120 5 C -0.137 4.137 6 C -0.191 4.191 7 H 0.154 0.846 8 C 0.537 3.463 9 O -0.545 6.545 10 N -0.659 5.659 11 C 0.181 3.819 12 C -0.171 4.171 13 C -0.060 4.060 14 C -0.232 4.232 15 C 0.131 3.869 16 O -0.336 6.336 17 C 0.083 3.917 18 C 0.028 3.972 19 C -0.546 4.546 20 H 0.071 0.929 21 C 0.002 3.998 22 N -0.930 5.930 23 Si 0.975 3.025 24 H -0.271 1.271 25 H -0.281 1.281 26 H -0.260 1.260 27 C -0.191 4.191 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.048 0.952 31 H 0.046 0.954 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.132 0.868 37 H 0.084 0.916 38 H 0.426 0.574 39 H 0.137 0.863 40 H 0.151 0.849 41 H 0.133 0.867 42 H 0.063 0.937 43 H 0.060 0.940 44 H -0.001 1.001 45 H 0.001 0.999 46 H 0.267 0.733 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.591 11.361 10.835 31.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.114 4.114 3 C -0.092 4.092 4 C -0.177 4.177 5 C -0.175 4.175 6 C -0.211 4.211 7 H 0.172 0.828 8 C 0.327 3.673 9 O -0.422 6.422 10 N -0.305 5.305 11 C 0.086 3.914 12 C -0.191 4.191 13 C -0.079 4.079 14 C -0.251 4.251 15 C 0.085 3.915 16 O -0.250 6.250 17 C 0.009 3.991 18 C -0.009 4.009 19 C -0.584 4.584 20 H 0.089 0.911 21 C -0.197 4.197 22 N -0.569 5.569 23 Si 0.799 3.201 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.184 1.184 27 C -0.212 4.212 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.150 0.850 37 H 0.102 0.898 38 H 0.265 0.735 39 H 0.155 0.845 40 H 0.168 0.832 41 H 0.151 0.849 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.017 0.983 45 H 0.019 0.981 46 H 0.076 0.924 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -27.765 10.867 10.624 31.652 hybrid contribution 1.435 -0.530 -0.350 1.570 sum -26.330 10.337 10.273 30.094 Atomic orbital electron populations 1.21898 0.94844 1.01574 1.02453 1.20999 0.95633 0.93153 1.01575 1.21715 0.89995 0.97337 1.00121 1.21540 0.99713 0.97044 0.99389 1.23326 1.00139 1.03839 0.90156 1.22422 0.93675 0.97804 1.07238 0.82820 1.20487 0.81654 0.90898 0.74226 1.90712 1.73831 1.28750 1.48861 1.43437 1.05714 1.09010 1.72336 1.17353 0.90213 0.88492 0.95337 1.21205 1.01870 0.92661 1.03395 1.21079 0.92024 0.98953 0.95821 1.21488 1.00584 0.97837 1.05229 1.19103 0.85923 0.94597 0.91873 1.86073 1.30491 1.38835 1.69617 1.22901 0.91492 0.84287 1.00404 1.18973 0.90661 0.97046 0.94261 1.21402 1.05273 0.97006 1.34728 0.91129 1.26027 0.98890 1.00272 0.94495 1.70109 1.21881 1.29788 1.35130 0.85293 0.77261 0.78417 0.79140 1.19647 1.20623 1.18361 1.20138 0.96070 0.98798 1.06147 0.91167 0.92182 0.93259 0.93508 0.92823 0.90700 0.90283 0.91749 0.84990 0.89793 0.73484 0.84528 0.83163 0.84914 0.91909 0.92187 0.98285 0.98099 0.92449 0.84104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 8.92 71.98 0.64 -1.30 16 2 C -0.08 -1.34 4.36 30.59 0.13 -1.20 16 3 C -0.09 -1.17 2.47 -52.18 -0.13 -1.30 16 4 C -0.12 -0.93 9.49 71.98 0.68 -0.25 16 5 C -0.14 -1.59 9.53 30.61 0.29 -1.30 16 6 C -0.19 -2.45 5.91 -11.52 -0.07 -2.52 16 7 H 0.15 1.07 8.14 -2.39 -0.02 1.06 16 8 C 0.54 11.04 7.44 87.66 0.65 11.69 16 9 O -0.54 -14.86 10.55 -3.06 -0.03 -14.89 16 10 N -0.66 -12.93 5.33 -303.54 -1.62 -14.55 16 11 C 0.18 4.84 6.29 38.14 0.24 5.08 16 12 C -0.17 -4.75 8.69 22.41 0.19 -4.56 16 13 C -0.06 -1.65 10.03 22.24 0.22 -1.43 16 14 C -0.23 -7.40 9.04 22.39 0.20 -7.20 16 15 C 0.13 4.68 6.68 22.49 0.15 4.83 16 16 O -0.34 -14.23 10.13 -92.39 -0.94 -15.17 16 17 C 0.08 3.66 4.68 71.98 0.34 4.00 16 18 C 0.03 1.52 5.34 29.85 0.16 1.68 16 19 C -0.55 -30.87 9.11 25.60 0.23 -30.64 16 20 H 0.07 3.73 7.74 -2.91 -0.02 3.70 16 21 C 0.00 0.10 5.46 84.66 0.46 0.56 16 22 N -0.93 -56.50 13.29 21.45 0.28 -56.22 16 23 Si 0.98 43.58 29.54 68.60 2.03 45.60 16 24 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 25 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 26 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 27 C -0.19 -5.76 9.90 22.48 0.22 -5.53 16 28 H 0.07 0.71 6.45 -2.39 -0.02 0.69 16 29 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 31 H 0.05 1.05 7.01 -2.39 -0.02 1.03 16 32 H 0.05 1.15 7.26 -2.39 -0.02 1.13 16 33 H 0.07 0.36 7.90 -2.39 -0.02 0.34 16 34 H 0.08 0.55 5.58 -2.39 -0.01 0.54 16 35 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 36 H 0.13 0.84 8.05 -2.39 -0.02 0.83 16 37 H 0.08 1.28 8.05 -2.39 -0.02 1.26 16 38 H 0.43 5.43 8.82 -92.71 -0.82 4.62 16 39 H 0.14 3.78 6.24 -2.91 -0.02 3.76 16 40 H 0.15 3.24 8.06 -2.91 -0.02 3.22 16 41 H 0.13 4.11 6.29 -2.91 -0.02 4.09 16 42 H 0.06 2.58 7.66 -2.39 -0.02 2.56 16 43 H 0.06 2.50 7.66 -2.39 -0.02 2.48 16 44 H 0.00 -0.08 8.14 -2.39 -0.02 -0.09 16 45 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 46 H 0.27 15.12 8.31 -92.72 -0.77 14.35 16 47 H 0.14 3.83 8.06 -2.91 -0.02 3.81 16 Total: -1.00 -70.77 381.50 4.51 -66.26 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: 0.15 Total: 18.36 kcal Atomic # 6 Polarization: -34.02 SS G_CDS: 4.63 Total: -29.39 kcal Atomic # 7 Polarization: -69.43 SS G_CDS: -1.33 Total: -70.76 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -0.97 Total: -30.06 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Total: -70.77 4.51 -66.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122520341.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.741 kcal (2) G-P(sol) polarization free energy of solvation -70.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds