Wall clock time and date at job start Tue Mar 31 2020 12:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47126 * 2 1 4 4 C 1.53004 * 115.55025 * 325.67453 * 3 2 1 5 5 C 1.52998 * 117.49870 * 111.37538 * 3 2 1 6 6 C 1.52994 * 117.50096 * 180.02562 * 3 2 1 7 7 H 1.08999 * 117.50168 * 0.02562 * 6 3 2 8 8 C 1.50702 * 117.49821 * 145.02317 * 6 3 2 9 9 O 1.21282 * 120.00390 * 0.02562 * 8 6 3 10 10 N 1.34779 * 119.99446 * 180.02562 * 8 6 3 11 11 C 1.39924 * 119.99385 * 184.62109 * 10 8 6 12 12 C 1.38934 * 120.04297 * 144.91196 * 11 10 8 13 13 C 1.38124 * 120.04023 * 180.02562 * 12 11 10 14 14 C 1.38216 * 120.12445 * 359.96611 * 13 12 11 15 15 C 1.38758 * 120.08314 * 0.28767 * 14 13 12 16 16 O 1.35907 * 120.01819 * 179.70226 * 15 14 13 17 17 C 1.42894 * 116.99778 * 359.97438 * 16 15 14 18 18 C 1.52997 * 109.46938 * 180.02562 * 17 16 15 19 19 C 1.50709 * 109.47421 * 179.97438 * 18 17 16 20 20 H 1.08002 * 119.99220 * 0.02562 * 19 18 17 21 21 C 1.37866 * 120.00204 * 179.97438 * 19 18 17 22 22 N 1.31513 * 120.00428 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99982 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47260 * 59.99752 * 23 21 19 25 25 H 1.48498 * 109.47364 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.46972 * 299.99705 * 23 21 19 27 27 C 1.38629 * 119.96154 * 359.46249 * 15 14 13 28 28 H 1.09002 * 109.46806 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46697 * 299.99568 * 1 2 3 30 30 H 1.08994 * 109.47220 * 59.99944 * 1 2 3 31 31 H 1.09004 * 109.47320 * 240.00163 * 2 1 3 32 32 H 1.08994 * 109.47220 * 120.00056 * 2 1 3 33 33 H 1.08998 * 109.46992 * 274.32726 * 4 3 2 34 34 H 1.09006 * 109.46782 * 34.32463 * 4 3 2 35 35 H 1.08994 * 109.47348 * 154.32920 * 4 3 2 36 36 H 1.08998 * 117.49768 * 0.02562 * 5 3 2 37 37 H 1.09000 * 117.49858 * 214.98178 * 5 3 2 38 38 H 0.96998 * 120.00347 * 4.61934 * 10 8 6 39 39 H 1.07994 * 119.97637 * 359.96976 * 12 11 10 40 40 H 1.07994 * 119.93680 * 179.97438 * 13 12 11 41 41 H 1.07996 * 119.95334 * 180.02562 * 14 13 12 42 42 H 1.09009 * 109.47168 * 299.99839 * 17 16 15 43 43 H 1.08996 * 109.47493 * 59.99859 * 17 16 15 44 44 H 1.08997 * 109.47369 * 299.99669 * 18 17 16 45 45 H 1.09001 * 109.47376 * 60.00301 * 18 17 16 46 46 H 0.96998 * 120.00848 * 179.97438 * 22 21 19 47 47 H 1.08002 * 120.06237 * 180.26109 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.1852 2.4447 -0.7784 5 6 2.7419 1.9437 1.2638 6 6 3.5550 1.6562 -0.0006 7 1 4.1884 0.7692 -0.0014 8 6 4.0906 2.8381 -0.7670 9 8 3.3281 3.5774 -1.3525 10 7 5.4173 3.0736 -0.8016 11 6 5.9075 4.2232 -1.4308 12 6 7.0247 4.8726 -0.9207 13 6 7.5083 6.0077 -1.5416 14 6 6.8831 6.5000 -2.6717 15 6 5.7637 5.8585 -3.1825 16 8 5.1464 6.3471 -4.2903 17 6 5.7034 7.5250 -4.8769 18 6 4.8799 7.9221 -6.1037 19 6 5.4670 9.1647 -6.7222 20 1 6.3403 9.6249 -6.2842 21 6 4.8897 9.7134 -7.8476 22 7 3.8265 9.1527 -8.3813 23 14 5.6178 11.2532 -8.6145 24 1 7.0201 10.9867 -9.0242 25 1 4.8185 11.6387 -9.8052 26 1 5.5933 12.3589 -7.6235 27 6 5.2785 4.7160 -2.5652 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.4776 2.4333 -1.8284 34 1 0.1338 2.1704 -0.6911 35 1 1.3351 3.4442 -0.3704 36 1 2.8406 1.2456 2.0950 37 1 2.5946 2.9875 1.5409 38 1 6.0321 2.4461 -0.3903 39 1 7.5148 4.4901 -0.0376 40 1 8.3766 6.5114 -1.1434 41 1 7.2637 7.3875 -3.1552 42 1 5.6854 8.3367 -4.1495 43 1 6.7327 7.3294 -5.1775 44 1 4.8975 7.1107 -6.8313 45 1 3.8508 8.1180 -5.8027 46 1 3.4202 9.5388 -9.1729 47 1 4.4099 4.2130 -2.9639 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122520591.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:53 Heat of formation + Delta-G solvation = -35.982584 kcal Electronic energy + Delta-G solvation = -25553.769373 eV Core-core repulsion = 21895.289331 eV Total energy + Delta-G solvation = -3658.480042 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.93007 -39.60093 -38.18649 -36.84994 -34.55490 -33.32370 -32.58969 -30.84315 -29.69957 -29.05340 -28.18306 -25.30479 -24.76050 -24.11440 -22.72162 -21.99123 -20.81391 -20.12621 -19.19115 -18.14085 -17.36968 -16.39389 -16.02635 -15.63856 -15.55148 -15.34213 -15.22428 -14.98175 -14.74416 -14.50181 -14.16476 -13.56843 -13.23999 -13.06567 -12.90503 -12.67953 -12.57198 -12.49563 -12.29398 -11.99987 -11.74211 -11.63497 -11.46527 -11.36007 -11.12393 -10.88840 -10.81863 -10.53134 -10.45069 -10.26967 -10.05931 -9.79368 -9.63272 -9.54420 -9.27530 -8.42318 -8.23316 -7.79301 -6.06955 -4.11818 1.37508 1.66198 2.34785 2.78194 3.30704 3.34884 3.36719 3.42385 3.85751 3.99926 4.26693 4.29355 4.42739 4.45177 4.69431 4.76162 4.96504 5.02578 5.06427 5.21536 5.28817 5.29075 5.37167 5.39447 5.48681 5.52026 5.62123 5.63940 5.71693 5.75996 5.83320 5.93502 5.96588 6.01830 6.06672 6.07756 6.31237 6.39724 6.43020 6.55614 6.62999 6.78355 7.01787 7.26773 7.54652 7.68476 7.84690 8.01355 8.11084 8.27212 8.93599 9.52175 11.04610 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016604 B = 0.002357 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.885829 B =11875.263998 C =13354.456835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.088 4.088 3 C -0.085 4.085 4 C -0.113 4.113 5 C -0.146 4.146 6 C -0.190 4.190 7 H 0.123 0.877 8 C 0.538 3.462 9 O -0.503 6.503 10 N -0.670 5.670 11 C 0.176 3.824 12 C -0.196 4.196 13 C -0.062 4.062 14 C -0.226 4.226 15 C 0.163 3.837 16 O -0.312 6.312 17 C 0.065 3.935 18 C 0.025 3.975 19 C -0.526 4.526 20 H 0.058 0.942 21 C 0.060 3.940 22 N -0.889 5.889 23 Si 0.899 3.101 24 H -0.276 1.276 25 H -0.286 1.286 26 H -0.276 1.276 27 C -0.163 4.163 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.409 0.591 39 H 0.120 0.880 40 H 0.125 0.875 41 H 0.131 0.869 42 H 0.051 0.949 43 H 0.051 0.949 44 H 0.028 0.972 45 H 0.028 0.972 46 H 0.264 0.736 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.222 -19.133 21.929 29.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.125 4.125 3 C -0.086 4.086 4 C -0.170 4.170 5 C -0.183 4.183 6 C -0.212 4.212 7 H 0.141 0.859 8 C 0.326 3.674 9 O -0.376 6.376 10 N -0.315 5.315 11 C 0.082 3.918 12 C -0.217 4.217 13 C -0.081 4.081 14 C -0.245 4.245 15 C 0.115 3.885 16 O -0.225 6.225 17 C -0.009 4.009 18 C -0.012 4.012 19 C -0.565 4.565 20 H 0.076 0.924 21 C -0.142 4.142 22 N -0.527 5.527 23 Si 0.727 3.273 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.201 1.201 27 C -0.184 4.184 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.245 0.755 39 H 0.138 0.862 40 H 0.143 0.857 41 H 0.149 0.851 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.046 0.954 45 H 0.047 0.953 46 H 0.073 0.927 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.307 -18.672 21.258 28.296 hybrid contribution 1.145 0.677 -0.175 1.341 sum 1.452 -17.995 21.083 27.756 Atomic orbital electron populations 1.21836 0.95096 1.01542 1.02496 1.21106 0.96479 0.92850 1.02066 1.21643 0.90309 0.97263 0.99357 1.21518 0.97648 0.97211 1.00631 1.23239 1.01438 1.03048 0.90563 1.22319 0.96618 0.98752 1.03471 0.85862 1.19864 0.81579 0.85521 0.80464 1.90786 1.56385 1.47661 1.42814 1.43423 1.07752 1.23431 1.56869 1.17307 0.94726 0.88089 0.91695 1.20625 0.99896 0.98660 1.02497 1.20655 0.98515 0.94684 0.94269 1.21388 0.98861 1.03747 1.00547 1.18992 0.90465 0.92141 0.86920 1.86195 1.53663 1.44499 1.38127 1.23345 0.98264 0.82681 0.96616 1.19125 0.95700 0.96653 0.89740 1.20933 1.13542 1.10326 1.11666 0.92409 1.24992 0.94908 0.97550 0.96767 1.69967 1.20727 1.40166 1.21889 0.86544 0.79100 0.83004 0.78689 1.20104 1.21129 1.20101 1.20422 1.04000 0.98058 0.95909 0.92738 0.92488 0.91756 0.91339 0.91714 0.91182 0.92267 0.91641 0.87783 0.88138 0.75521 0.86174 0.85741 0.85080 0.93079 0.93071 0.95389 0.95350 0.92652 0.83802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 8.92 37.16 0.33 -0.63 16 2 C -0.09 -0.57 6.12 -26.73 -0.16 -0.73 16 3 C -0.09 -0.72 2.46 -154.51 -0.38 -1.10 16 4 C -0.11 -1.22 7.73 37.16 0.29 -0.93 16 5 C -0.15 -1.06 9.53 -26.71 -0.25 -1.31 16 6 C -0.19 -1.56 5.91 -91.75 -0.54 -2.10 16 7 H 0.12 0.70 8.14 -51.93 -0.42 0.28 16 8 C 0.54 6.37 7.44 -10.98 -0.08 6.29 16 9 O -0.50 -7.99 10.54 5.56 0.06 -7.93 16 10 N -0.67 -7.08 5.34 -9.88 -0.05 -7.13 16 11 C 0.18 2.43 6.30 -83.72 -0.53 1.91 16 12 C -0.20 -2.39 9.96 -39.37 -0.39 -2.78 16 13 C -0.06 -0.82 10.03 -39.63 -0.40 -1.22 16 14 C -0.23 -3.66 9.04 -39.40 -0.36 -4.01 16 15 C 0.16 3.07 6.68 -39.24 -0.26 2.80 16 16 O -0.31 -6.89 10.13 -19.45 -0.20 -7.09 16 17 C 0.06 1.45 4.68 37.16 0.17 1.62 16 18 C 0.02 0.68 5.34 -27.88 -0.15 0.53 16 19 C -0.53 -14.96 9.11 -34.44 -0.31 -15.28 16 20 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 21 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 22 N -0.89 -26.97 13.29 55.43 0.74 -26.23 16 23 Si 0.90 21.58 29.54 -169.99 -5.02 16.55 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 25 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 C -0.16 -2.85 8.63 -39.25 -0.34 -3.19 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.44 6.45 -51.93 -0.33 0.11 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.34 7.90 -51.93 -0.41 -0.07 16 33 H 0.07 0.89 7.26 -51.93 -0.38 0.52 16 34 H 0.06 0.54 5.58 -51.93 -0.29 0.25 16 35 H 0.06 0.81 7.01 -51.93 -0.36 0.45 16 36 H 0.10 0.53 8.05 -51.93 -0.42 0.11 16 37 H 0.10 0.84 8.05 -51.93 -0.42 0.42 16 38 H 0.41 2.74 8.82 -40.82 -0.36 2.38 16 39 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 40 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 41 H 0.13 2.06 6.29 -52.49 -0.33 1.73 16 42 H 0.05 1.08 7.66 -51.92 -0.40 0.69 16 43 H 0.05 1.07 7.66 -51.93 -0.40 0.67 16 44 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 46 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 47 H 0.14 2.73 6.22 -52.49 -0.33 2.41 16 LS Contribution 381.48 15.07 5.75 5.75 Total: -1.00 -33.17 381.48 -9.54 -42.71 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -7.35 Total: 1.85 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: -3.46 Total: -18.48 kcal Atomic # 7 Polarization: -34.05 SS G_CDS: 0.68 Total: -33.36 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -0.14 Total: -15.01 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.17 -9.54 -42.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122520591.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.729 kcal (2) G-P(sol) polarization free energy of solvation -33.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds