Wall clock time and date at job start Tue Mar 31 2020 12:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47126 * 2 1 4 4 C 1.53004 * 115.55025 * 325.67453 * 3 2 1 5 5 C 1.52998 * 117.49870 * 111.37538 * 3 2 1 6 6 C 1.52994 * 117.50096 * 180.02562 * 3 2 1 7 7 H 1.08999 * 117.50168 * 0.02562 * 6 3 2 8 8 C 1.50702 * 117.49821 * 145.02317 * 6 3 2 9 9 O 1.21282 * 120.00390 * 0.02562 * 8 6 3 10 10 N 1.34779 * 119.99446 * 180.02562 * 8 6 3 11 11 C 1.39924 * 119.99385 * 184.62109 * 10 8 6 12 12 C 1.38934 * 120.04297 * 144.91196 * 11 10 8 13 13 C 1.38124 * 120.04023 * 180.02562 * 12 11 10 14 14 C 1.38216 * 120.12445 * 359.96611 * 13 12 11 15 15 C 1.38758 * 120.08314 * 0.28767 * 14 13 12 16 16 O 1.35907 * 120.01819 * 179.70226 * 15 14 13 17 17 C 1.42894 * 116.99778 * 359.97438 * 16 15 14 18 18 C 1.52997 * 109.46938 * 180.02562 * 17 16 15 19 19 C 1.50709 * 109.47421 * 179.97438 * 18 17 16 20 20 H 1.08002 * 119.99220 * 0.02562 * 19 18 17 21 21 C 1.37866 * 120.00204 * 179.97438 * 19 18 17 22 22 N 1.31513 * 120.00428 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99982 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47260 * 59.99752 * 23 21 19 25 25 H 1.48498 * 109.47364 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.46972 * 299.99705 * 23 21 19 27 27 C 1.38629 * 119.96154 * 359.46249 * 15 14 13 28 28 H 1.09002 * 109.46806 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46697 * 299.99568 * 1 2 3 30 30 H 1.08994 * 109.47220 * 59.99944 * 1 2 3 31 31 H 1.09004 * 109.47320 * 240.00163 * 2 1 3 32 32 H 1.08994 * 109.47220 * 120.00056 * 2 1 3 33 33 H 1.08998 * 109.46992 * 274.32726 * 4 3 2 34 34 H 1.09006 * 109.46782 * 34.32463 * 4 3 2 35 35 H 1.08994 * 109.47348 * 154.32920 * 4 3 2 36 36 H 1.08998 * 117.49768 * 0.02562 * 5 3 2 37 37 H 1.09000 * 117.49858 * 214.98178 * 5 3 2 38 38 H 0.96998 * 120.00347 * 4.61934 * 10 8 6 39 39 H 1.07994 * 119.97637 * 359.96976 * 12 11 10 40 40 H 1.07994 * 119.93680 * 179.97438 * 13 12 11 41 41 H 1.07996 * 119.95334 * 180.02562 * 14 13 12 42 42 H 1.09009 * 109.47168 * 299.99839 * 17 16 15 43 43 H 1.08996 * 109.47493 * 59.99859 * 17 16 15 44 44 H 1.08997 * 109.47369 * 299.99669 * 18 17 16 45 45 H 1.09001 * 109.47376 * 60.00301 * 18 17 16 46 46 H 0.96998 * 120.00848 * 179.97438 * 22 21 19 47 47 H 1.08002 * 120.06237 * 180.26109 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.1852 2.4447 -0.7784 5 6 2.7419 1.9437 1.2638 6 6 3.5550 1.6562 -0.0006 7 1 4.1884 0.7692 -0.0014 8 6 4.0906 2.8381 -0.7670 9 8 3.3281 3.5774 -1.3525 10 7 5.4173 3.0736 -0.8016 11 6 5.9075 4.2232 -1.4308 12 6 7.0247 4.8726 -0.9207 13 6 7.5083 6.0077 -1.5416 14 6 6.8831 6.5000 -2.6717 15 6 5.7637 5.8585 -3.1825 16 8 5.1464 6.3471 -4.2903 17 6 5.7034 7.5250 -4.8769 18 6 4.8799 7.9221 -6.1037 19 6 5.4670 9.1647 -6.7222 20 1 6.3403 9.6249 -6.2842 21 6 4.8897 9.7134 -7.8476 22 7 3.8265 9.1527 -8.3813 23 14 5.6178 11.2532 -8.6145 24 1 7.0201 10.9867 -9.0242 25 1 4.8185 11.6387 -9.8052 26 1 5.5933 12.3589 -7.6235 27 6 5.2785 4.7160 -2.5652 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.4776 2.4333 -1.8284 34 1 0.1338 2.1704 -0.6911 35 1 1.3351 3.4442 -0.3704 36 1 2.8406 1.2456 2.0950 37 1 2.5946 2.9875 1.5409 38 1 6.0321 2.4461 -0.3903 39 1 7.5148 4.4901 -0.0376 40 1 8.3766 6.5114 -1.1434 41 1 7.2637 7.3875 -3.1552 42 1 5.6854 8.3367 -4.1495 43 1 6.7327 7.3294 -5.1775 44 1 4.8975 7.1107 -6.8313 45 1 3.8508 8.1180 -5.8027 46 1 3.4202 9.5388 -9.1729 47 1 4.4099 4.2130 -2.9639 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122520591.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:52 Heat of formation + Delta-G solvation = -55.719084 kcal Electronic energy + Delta-G solvation = -25554.625211 eV Core-core repulsion = 21895.289331 eV Total energy + Delta-G solvation = -3659.335881 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.90575 -40.83967 -39.22945 -37.99460 -35.75311 -35.35883 -33.16377 -32.61816 -31.08053 -30.34390 -29.02793 -27.06842 -25.88818 -24.67774 -23.88982 -23.55824 -22.21145 -21.21848 -20.00632 -19.41010 -18.39729 -18.22565 -17.18793 -17.00773 -16.87459 -16.72564 -16.45203 -16.29096 -15.71790 -15.47122 -15.14915 -14.57893 -14.47265 -14.37009 -14.29990 -14.07429 -13.67338 -13.39746 -13.32420 -13.20969 -13.02985 -12.74224 -12.71559 -12.64715 -12.57478 -12.20012 -12.03696 -11.78278 -11.67905 -11.61937 -11.45374 -11.20882 -11.09904 -10.83252 -10.63851 -10.46618 -9.44786 -9.03529 -8.28116 -6.42957 0.21546 0.46560 1.39278 1.43425 1.44309 1.52259 1.87691 2.28442 2.51261 2.70896 2.84850 3.05808 3.55351 3.63597 3.81431 3.89784 4.06237 4.10042 4.15567 4.19677 4.23665 4.24418 4.43524 4.44743 4.52509 4.57161 4.69012 4.75160 4.77085 4.84359 4.89322 4.94899 5.01607 5.12255 5.19733 5.25622 5.26794 5.31551 5.32434 5.39251 5.41471 5.42089 5.49777 5.56590 5.66183 5.90415 6.04457 6.41600 6.54083 6.71706 7.14532 7.27363 8.85199 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016604 B = 0.002357 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.885829 B =11875.263998 C =13354.456835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.081 4.081 3 C -0.100 4.100 4 C -0.108 4.108 5 C -0.127 4.127 6 C -0.186 4.186 7 H 0.160 0.840 8 C 0.529 3.471 9 O -0.553 6.553 10 N -0.654 5.654 11 C 0.177 3.823 12 C -0.174 4.174 13 C -0.053 4.053 14 C -0.235 4.235 15 C 0.122 3.878 16 O -0.346 6.346 17 C 0.085 3.915 18 C 0.027 3.973 19 C -0.546 4.546 20 H 0.074 0.926 21 C -0.001 4.001 22 N -0.933 5.933 23 Si 0.980 3.020 24 H -0.261 1.261 25 H -0.283 1.283 26 H -0.263 1.263 27 C -0.187 4.187 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.048 0.952 31 H 0.066 0.934 32 H 0.089 0.911 33 H 0.038 0.962 34 H 0.070 0.930 35 H 0.039 0.961 36 H 0.139 0.861 37 H 0.084 0.916 38 H 0.432 0.568 39 H 0.169 0.831 40 H 0.166 0.834 41 H 0.132 0.868 42 H 0.061 0.939 43 H 0.065 0.935 44 H -0.004 1.004 45 H -0.007 1.007 46 H 0.267 0.733 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.239 -20.037 25.166 32.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.119 4.119 3 C -0.100 4.100 4 C -0.165 4.165 5 C -0.164 4.164 6 C -0.207 4.207 7 H 0.178 0.822 8 C 0.318 3.682 9 O -0.430 6.430 10 N -0.301 5.301 11 C 0.083 3.917 12 C -0.194 4.194 13 C -0.072 4.072 14 C -0.254 4.254 15 C 0.076 3.924 16 O -0.261 6.261 17 C 0.011 3.989 18 C -0.010 4.010 19 C -0.584 4.584 20 H 0.092 0.908 21 C -0.200 4.200 22 N -0.573 5.573 23 Si 0.803 3.197 24 H -0.186 1.186 25 H -0.208 1.208 26 H -0.187 1.187 27 C -0.208 4.208 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.108 0.892 33 H 0.057 0.943 34 H 0.089 0.911 35 H 0.058 0.942 36 H 0.157 0.843 37 H 0.103 0.897 38 H 0.272 0.728 39 H 0.186 0.814 40 H 0.184 0.816 41 H 0.150 0.850 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.015 0.985 45 H 0.012 0.988 46 H 0.076 0.924 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.363 -19.624 24.544 31.603 hybrid contribution 0.163 0.855 -1.077 1.384 sum 3.526 -18.769 23.467 30.255 Atomic orbital electron populations 1.21840 0.95283 1.02147 1.01868 1.21107 0.96306 0.91293 1.03156 1.21686 0.90208 0.97858 1.00279 1.21388 0.99122 0.96973 0.99033 1.23324 0.99349 1.03000 0.90726 1.22407 0.96703 0.98134 1.03460 0.82245 1.20671 0.81583 0.85980 0.79923 1.90796 1.57677 1.49624 1.44870 1.43359 1.07913 1.22878 1.55980 1.17464 0.94814 0.88997 0.90469 1.21141 0.98147 0.97280 1.02842 1.21147 0.98895 0.94605 0.92521 1.21531 0.98188 1.03842 1.01880 1.19300 0.92460 0.93690 0.86976 1.86099 1.55149 1.44561 1.40287 1.22895 0.97551 0.83567 0.94917 1.18977 0.94824 0.95892 0.91294 1.21364 1.14142 1.10697 1.12178 0.90790 1.26120 0.95143 1.01450 0.97266 1.70132 1.22395 1.42210 1.22515 0.85276 0.78593 0.78133 0.77687 1.18572 1.20783 1.18726 1.20383 1.04082 0.98445 0.97935 0.91494 0.92267 0.93279 0.91530 0.89212 0.94340 0.91112 0.94181 0.84279 0.89717 0.72810 0.81393 0.81616 0.84977 0.92087 0.91677 0.98540 0.98816 0.92411 0.86895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 8.92 71.98 0.64 -1.12 16 2 C -0.08 -0.89 6.12 30.60 0.19 -0.70 16 3 C -0.10 -1.59 2.46 -52.18 -0.13 -1.71 16 4 C -0.11 -2.54 7.73 71.98 0.56 -1.98 16 5 C -0.13 -1.52 9.53 30.61 0.29 -1.23 16 6 C -0.19 -2.67 5.91 -11.52 -0.07 -2.74 16 7 H 0.16 1.14 8.14 -2.39 -0.02 1.12 16 8 C 0.53 12.47 7.44 87.66 0.65 13.12 16 9 O -0.55 -19.02 10.54 -3.03 -0.03 -19.05 16 10 N -0.65 -12.69 5.34 -303.55 -1.62 -14.31 16 11 C 0.18 4.72 6.30 38.14 0.24 4.96 16 12 C -0.17 -3.56 9.96 22.41 0.22 -3.34 16 13 C -0.05 -1.21 10.03 22.24 0.22 -0.99 16 14 C -0.24 -7.47 9.04 22.39 0.20 -7.27 16 15 C 0.12 4.84 6.68 22.49 0.15 4.99 16 16 O -0.35 -16.61 10.13 -92.50 -0.94 -17.54 16 17 C 0.08 4.00 4.68 71.98 0.34 4.33 16 18 C 0.03 1.59 5.34 29.85 0.16 1.75 16 19 C -0.55 -31.91 9.11 25.60 0.23 -31.68 16 20 H 0.07 3.98 7.74 -2.91 -0.02 3.96 16 21 C 0.00 -0.09 5.46 84.65 0.46 0.38 16 22 N -0.93 -58.82 13.29 21.44 0.28 -58.54 16 23 Si 0.98 44.52 29.54 68.60 2.03 46.54 16 24 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 25 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 26 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 27 C -0.19 -6.93 8.63 22.49 0.19 -6.74 16 28 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.05 0.69 6.45 -2.39 -0.02 0.68 16 31 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.09 0.57 7.90 -2.39 -0.02 0.55 16 33 H 0.04 1.11 7.26 -2.39 -0.02 1.10 16 34 H 0.07 1.41 5.58 -2.38 -0.01 1.40 16 35 H 0.04 1.11 7.01 -2.39 -0.02 1.09 16 36 H 0.14 0.75 8.05 -2.39 -0.02 0.73 16 37 H 0.08 1.32 8.05 -2.39 -0.02 1.30 16 38 H 0.43 4.20 8.82 -92.71 -0.82 3.39 16 39 H 0.17 1.91 8.06 -2.91 -0.02 1.88 16 40 H 0.17 2.44 8.06 -2.91 -0.02 2.42 16 41 H 0.13 4.08 6.29 -2.91 -0.02 4.06 16 42 H 0.06 2.69 7.66 -2.38 -0.02 2.67 16 43 H 0.07 2.82 7.66 -2.39 -0.02 2.80 16 44 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 45 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 46 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 47 H 0.11 4.81 6.22 -2.91 -0.02 4.79 16 Total: -1.00 -80.17 381.48 4.43 -75.74 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 0.15 Total: 17.13 kcal Atomic # 6 Polarization: -34.53 SS G_CDS: 4.56 Total: -29.97 kcal Atomic # 7 Polarization: -71.51 SS G_CDS: -1.33 Total: -72.85 kcal Atomic # 8 Polarization: -35.63 SS G_CDS: -0.97 Total: -36.60 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Total: -80.17 4.43 -75.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122520591.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.023 kcal (2) G-P(sol) polarization free energy of solvation -80.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds