Wall clock time and date at job start Tue Mar 31 2020 12:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47280 * 2 1 4 4 C 1.52994 * 115.56268 * 34.30661 * 3 2 1 5 5 C 1.53002 * 117.49412 * 248.61942 * 3 2 1 6 6 C 1.52998 * 59.99966 * 252.50670 * 5 3 2 7 7 H 1.09005 * 117.49192 * 107.49140 * 6 5 3 8 8 C 1.50699 * 117.52050 * 252.51684 * 6 5 3 9 9 O 1.21292 * 119.99808 * 68.71759 * 8 6 5 10 10 N 1.34771 * 119.99984 * 248.71883 * 8 6 5 11 11 C 1.39929 * 119.99694 * 175.38018 * 10 8 6 12 12 C 1.38933 * 120.03986 * 35.09584 * 11 10 8 13 13 C 1.38123 * 120.03744 * 179.97438 * 12 11 10 14 14 C 1.38217 * 120.12527 * 0.02767 * 13 12 11 15 15 C 1.38761 * 120.08306 * 0.02562 * 14 13 12 16 16 O 1.35904 * 120.01847 * 179.97438 * 15 14 13 17 17 C 1.42904 * 116.99852 * 0.02562 * 16 15 14 18 18 C 1.52996 * 109.46719 * 180.02562 * 17 16 15 19 19 C 1.50702 * 109.46649 * 179.97438 * 18 17 16 20 20 H 1.07995 * 120.00574 * 0.02562 * 19 18 17 21 21 C 1.37882 * 119.99708 * 179.97438 * 19 18 17 22 22 N 1.31513 * 119.99950 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99940 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46987 * 89.99983 * 23 21 19 25 25 H 1.48496 * 109.47046 * 210.00373 * 23 21 19 26 26 H 1.48497 * 109.47259 * 330.00382 * 23 21 19 27 27 C 1.38626 * 119.95876 * 359.66315 * 15 14 13 28 28 H 1.09003 * 109.46939 * 60.00355 * 1 2 3 29 29 H 1.08998 * 109.47167 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47012 * 300.00523 * 1 2 3 31 31 H 1.09007 * 109.47580 * 239.99734 * 2 1 3 32 32 H 1.09000 * 109.47321 * 119.99300 * 2 1 3 33 33 H 1.09002 * 109.47351 * 205.69637 * 4 3 2 34 34 H 1.09003 * 109.47079 * 325.69242 * 4 3 2 35 35 H 1.09002 * 109.47307 * 85.68988 * 4 3 2 36 36 H 1.09006 * 117.49474 * 145.01599 * 5 3 2 37 37 H 1.08996 * 117.50133 * 0.02562 * 5 3 2 38 38 H 0.96993 * 120.00874 * 355.38022 * 10 8 6 39 39 H 1.08000 * 119.98101 * 0.02562 * 12 11 10 40 40 H 1.07999 * 119.93485 * 179.97438 * 13 12 11 41 41 H 1.08000 * 119.95602 * 179.97438 * 14 13 12 42 42 H 1.09007 * 109.46616 * 299.99833 * 17 16 15 43 43 H 1.08999 * 109.47019 * 59.99982 * 17 16 15 44 44 H 1.08994 * 109.47461 * 299.99628 * 18 17 16 45 45 H 1.08999 * 109.47390 * 60.00208 * 18 17 16 46 46 H 0.97000 * 119.99604 * 180.02562 * 22 21 19 47 47 H 1.08005 * 120.05973 * 180.33784 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.1852 2.4450 0.7779 5 6 2.7420 1.9435 -1.2638 6 6 3.5550 1.6562 0.0000 7 1 4.1884 0.7690 0.0000 8 6 4.0912 2.8376 0.7667 9 8 3.3289 3.5755 1.3547 10 7 5.4175 3.0743 0.7989 11 6 5.9080 4.2236 1.4287 12 6 5.2800 4.7150 2.5664 13 6 5.7644 5.8492 3.1883 14 6 6.8740 6.4984 2.6806 15 6 7.5045 6.0127 1.5439 16 8 8.5952 6.6523 1.0456 17 6 9.0383 7.8183 1.7429 18 6 10.2674 8.3970 1.0391 19 6 10.7343 9.6270 1.7741 20 1 10.2075 9.9622 2.6553 21 6 11.8348 10.3239 1.3221 22 7 12.4767 9.9156 0.2494 23 14 12.4141 11.8482 2.2336 24 1 13.3987 11.4581 3.2746 25 1 13.0524 12.7855 1.2748 26 1 11.2517 12.5125 2.8759 27 6 7.0251 4.8709 0.9208 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 1.3351 3.4444 0.3694 34 1 0.1339 2.1707 0.6906 35 1 1.4776 2.4340 1.8279 36 1 2.5947 2.9874 -1.5410 37 1 2.8400 1.2457 -2.0953 38 1 6.0322 2.4481 0.3857 39 1 4.4130 4.2093 2.9653 40 1 5.2747 6.2299 4.0723 41 1 7.2503 7.3852 3.1688 42 1 8.2411 8.5617 1.7511 43 1 9.2976 7.5523 2.7676 44 1 11.0647 7.6540 1.0305 45 1 10.0076 8.6632 0.0145 46 1 13.2511 10.4057 -0.0683 47 1 7.5179 4.4884 0.0391 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122520776.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:57 Heat of formation + Delta-G solvation = -54.489228 kcal Electronic energy + Delta-G solvation = -25228.663239 eV Core-core repulsion = 21569.380689 eV Total energy + Delta-G solvation = -3659.282550 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.89452 -40.85959 -39.23816 -37.92102 -35.74139 -35.37599 -33.14006 -32.61211 -31.16813 -30.23736 -28.99309 -27.06993 -25.85156 -24.65487 -23.84454 -23.63020 -22.19821 -21.25827 -19.89810 -19.40783 -18.39873 -18.25224 -17.19824 -16.98219 -16.86375 -16.71873 -16.41357 -16.32893 -15.57254 -15.48760 -15.20163 -14.63025 -14.45924 -14.35222 -14.29114 -14.07871 -13.66004 -13.36988 -13.28368 -13.21249 -13.01998 -12.89771 -12.69262 -12.58123 -12.54707 -12.12599 -12.01797 -11.74821 -11.65697 -11.58305 -11.40479 -11.23731 -11.08467 -10.82192 -10.61801 -10.46840 -9.49093 -9.03061 -8.26653 -6.40109 0.18207 0.45132 1.41010 1.42022 1.43291 1.54395 1.81420 2.31428 2.55149 2.70761 2.83136 3.07926 3.52623 3.65768 3.81459 3.85638 4.04822 4.11541 4.13862 4.18918 4.27456 4.27671 4.43224 4.46673 4.51762 4.55952 4.68126 4.76432 4.77090 4.85899 4.91101 4.99054 5.03601 5.13718 5.20700 5.23503 5.24813 5.32301 5.33110 5.37887 5.43328 5.47418 5.49531 5.60262 5.68504 5.88265 6.07508 6.38882 6.51388 6.74510 7.09017 7.29956 8.86306 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.040408 B = 0.001862 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.771390 B =15036.532765 C =15409.770928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.083 4.083 3 C -0.092 4.092 4 C -0.106 4.106 5 C -0.137 4.137 6 C -0.190 4.190 7 H 0.154 0.846 8 C 0.538 3.462 9 O -0.544 6.544 10 N -0.659 5.659 11 C 0.181 3.819 12 C -0.171 4.171 13 C -0.060 4.060 14 C -0.232 4.232 15 C 0.131 3.869 16 O -0.336 6.336 17 C 0.083 3.917 18 C 0.028 3.972 19 C -0.547 4.547 20 H 0.071 0.929 21 C 0.003 3.997 22 N -0.930 5.930 23 Si 0.975 3.025 24 H -0.270 1.270 25 H -0.281 1.281 26 H -0.260 1.260 27 C -0.191 4.191 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.041 0.959 34 H 0.071 0.929 35 H 0.048 0.952 36 H 0.084 0.916 37 H 0.132 0.868 38 H 0.426 0.574 39 H 0.137 0.863 40 H 0.151 0.849 41 H 0.133 0.867 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.001 0.999 45 H -0.001 1.001 46 H 0.267 0.733 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.709 -22.378 0.097 31.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.121 4.121 3 C -0.092 4.092 4 C -0.163 4.163 5 C -0.174 4.174 6 C -0.210 4.210 7 H 0.172 0.828 8 C 0.327 3.673 9 O -0.421 6.421 10 N -0.305 5.305 11 C 0.086 3.914 12 C -0.192 4.192 13 C -0.079 4.079 14 C -0.252 4.252 15 C 0.085 3.915 16 O -0.250 6.250 17 C 0.009 3.991 18 C -0.009 4.009 19 C -0.585 4.585 20 H 0.089 0.911 21 C -0.196 4.196 22 N -0.569 5.569 23 Si 0.799 3.201 24 H -0.195 1.195 25 H -0.207 1.207 26 H -0.184 1.184 27 C -0.211 4.211 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.060 0.940 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.103 0.897 37 H 0.150 0.850 38 H 0.265 0.735 39 H 0.155 0.845 40 H 0.168 0.832 41 H 0.151 0.849 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.019 0.981 45 H 0.017 0.983 46 H 0.075 0.925 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -23.025 -21.908 0.188 31.783 hybrid contribution 1.198 0.930 0.138 1.523 sum -21.827 -20.978 0.326 30.275 Atomic orbital electron populations 1.21835 0.95030 1.02131 1.02026 1.21117 0.96475 0.91422 1.03052 1.21707 0.89888 0.97972 0.99660 1.21395 0.98898 0.96686 0.99352 1.23317 1.00161 1.02932 0.91008 1.22395 0.96937 0.98256 1.03440 0.82801 1.20470 0.81040 0.85854 0.79888 1.90713 1.57215 1.49422 1.44784 1.43436 1.08269 1.22569 1.56204 1.17356 0.93481 0.88645 0.91909 1.21213 1.02658 0.99539 0.95756 1.21080 0.93813 0.93780 0.99203 1.21486 1.00553 1.04258 0.98856 1.19110 0.87069 0.92339 0.93001 1.86078 1.42693 1.41928 1.54309 1.22904 0.96966 0.83581 0.95633 1.18970 0.91385 0.94997 0.95587 1.21409 1.13530 1.10797 1.12778 0.91132 1.26022 0.96358 1.01396 0.95830 1.70116 1.20501 1.41652 1.24612 0.85292 0.78735 0.77959 0.78122 1.19521 1.20672 1.18440 1.20133 1.00814 0.96604 1.03598 0.92502 0.91681 0.92626 0.89949 0.91167 0.94029 0.91057 0.93256 0.89709 0.85029 0.73476 0.84496 0.83161 0.84922 0.92206 0.91896 0.98104 0.98271 0.92459 0.84090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 8.92 71.98 0.64 -0.62 16 2 C -0.08 -0.70 6.12 30.59 0.19 -0.51 16 3 C -0.09 -1.18 2.47 -52.18 -0.13 -1.31 16 4 C -0.11 -1.87 7.73 71.98 0.56 -1.31 16 5 C -0.14 -1.58 9.53 30.59 0.29 -1.29 16 6 C -0.19 -2.42 5.91 -11.54 -0.07 -2.49 16 7 H 0.15 1.06 8.14 -2.38 -0.02 1.04 16 8 C 0.54 11.01 7.44 87.66 0.65 11.66 16 9 O -0.54 -14.83 10.54 -3.07 -0.03 -14.87 16 10 N -0.66 -12.87 5.34 -303.55 -1.62 -14.49 16 11 C 0.18 4.83 6.30 38.14 0.24 5.07 16 12 C -0.17 -4.76 8.69 22.41 0.19 -4.56 16 13 C -0.06 -1.65 10.03 22.24 0.22 -1.43 16 14 C -0.23 -7.40 9.04 22.39 0.20 -7.20 16 15 C 0.13 4.66 6.68 22.49 0.15 4.81 16 16 O -0.34 -14.22 10.14 -92.47 -0.94 -15.16 16 17 C 0.08 3.66 4.68 71.98 0.34 4.00 16 18 C 0.03 1.52 5.34 29.85 0.16 1.68 16 19 C -0.55 -30.94 9.11 25.60 0.23 -30.71 16 20 H 0.07 3.72 7.74 -2.91 -0.02 3.70 16 21 C 0.00 0.15 5.46 84.66 0.46 0.61 16 22 N -0.93 -56.44 13.29 21.45 0.28 -56.16 16 23 Si 0.98 43.54 29.54 68.60 2.03 45.56 16 24 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 25 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 26 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 27 C -0.19 -5.74 9.90 22.48 0.22 -5.52 16 28 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.05 0.53 6.45 -2.39 -0.02 0.52 16 31 H 0.08 0.45 7.90 -2.38 -0.02 0.43 16 32 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.04 0.91 7.02 -2.39 -0.02 0.89 16 34 H 0.07 1.01 5.59 -2.39 -0.01 1.00 16 35 H 0.05 1.03 7.25 -2.39 -0.02 1.02 16 36 H 0.08 1.28 8.05 -2.38 -0.02 1.27 16 37 H 0.13 0.84 8.05 -2.39 -0.02 0.83 16 38 H 0.43 5.39 8.82 -92.71 -0.82 4.57 16 39 H 0.14 3.79 6.22 -2.91 -0.02 3.77 16 40 H 0.15 3.24 8.06 -2.91 -0.02 3.22 16 41 H 0.13 4.11 6.29 -2.91 -0.02 4.09 16 42 H 0.06 2.49 7.66 -2.38 -0.02 2.47 16 43 H 0.06 2.58 7.66 -2.39 -0.02 2.57 16 44 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 45 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 46 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 47 H 0.14 3.83 8.06 -2.91 -0.02 3.80 16 Total: -1.00 -70.62 381.48 4.43 -66.19 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: 0.15 Total: 18.05 kcal Atomic # 6 Polarization: -33.68 SS G_CDS: 4.56 Total: -29.13 kcal Atomic # 7 Polarization: -69.32 SS G_CDS: -1.33 Total: -70.65 kcal Atomic # 8 Polarization: -29.05 SS G_CDS: -0.97 Total: -30.02 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Total: -70.62 4.43 -66.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122520776.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.701 kcal (2) G-P(sol) polarization free energy of solvation -70.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds