Wall clock time and date at job start Tue Mar 31 2020 12:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47042 * 2 1 4 4 C 1.53003 * 115.56318 * 325.69076 * 3 2 1 5 5 C 1.53075 * 117.50965 * 111.39508 * 3 2 1 6 6 C 1.53002 * 59.98523 * 107.47851 * 5 3 2 7 7 H 1.08997 * 117.49904 * 107.49978 * 6 5 3 8 8 C 1.50702 * 117.49576 * 252.50031 * 6 5 3 9 9 O 1.21283 * 120.00196 * 68.74671 * 8 6 5 10 10 N 1.34779 * 119.99722 * 248.73889 * 8 6 5 11 11 C 1.39917 * 119.99724 * 185.27455 * 10 8 6 12 12 C 1.38932 * 120.04165 * 213.57281 * 11 10 8 13 13 C 1.38127 * 120.03960 * 180.26028 * 12 11 10 14 14 C 1.38223 * 120.12242 * 359.49205 * 13 12 11 15 15 C 1.38763 * 120.08521 * 0.25280 * 14 13 12 16 16 O 1.35898 * 120.01923 * 179.97438 * 15 14 13 17 17 C 1.42898 * 116.99752 * 359.97438 * 16 15 14 18 18 C 1.53005 * 109.46626 * 179.97438 * 17 16 15 19 19 C 1.50700 * 109.46632 * 179.97438 * 18 17 16 20 20 H 1.07996 * 120.00497 * 0.02562 * 19 18 17 21 21 C 1.37882 * 119.99611 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00319 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99739 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47260 * 90.00323 * 23 21 19 25 25 H 1.48508 * 109.47075 * 209.99951 * 23 21 19 26 26 H 1.48500 * 109.47378 * 329.99423 * 23 21 19 27 27 C 1.38628 * 119.95796 * 0.02562 * 15 14 13 28 28 H 1.08997 * 109.47172 * 59.99093 * 1 2 3 29 29 H 1.08993 * 109.47238 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46715 * 299.99733 * 1 2 3 31 31 H 1.08999 * 109.46769 * 240.00639 * 2 1 3 32 32 H 1.08994 * 109.47135 * 120.00368 * 2 1 3 33 33 H 1.08997 * 109.47260 * 274.30427 * 4 3 2 34 34 H 1.08996 * 109.46681 * 34.31607 * 4 3 2 35 35 H 1.09005 * 109.46756 * 154.30773 * 4 3 2 36 36 H 1.08995 * 117.51922 * 359.97438 * 5 3 2 37 37 H 1.09006 * 117.51249 * 214.95357 * 5 3 2 38 38 H 0.96999 * 120.00112 * 5.28163 * 10 8 6 39 39 H 1.08001 * 119.98379 * 0.02562 * 12 11 10 40 40 H 1.07991 * 119.93946 * 179.76703 * 13 12 11 41 41 H 1.08001 * 119.95259 * 180.27559 * 14 13 12 42 42 H 1.09000 * 109.47312 * 299.99737 * 17 16 15 43 43 H 1.09000 * 109.47144 * 60.00195 * 17 16 15 44 44 H 1.08993 * 109.47312 * 300.00222 * 18 17 16 45 45 H 1.09000 * 109.47159 * 60.00255 * 18 17 16 46 46 H 0.97000 * 120.00588 * 180.02562 * 22 21 19 47 47 H 1.08001 * 120.06286 * 179.97438 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.1852 2.4450 -0.7780 5 6 2.7427 1.9440 1.2641 6 6 3.5551 1.6562 0.0000 7 1 3.9428 2.5107 -0.5546 8 6 4.4307 0.4297 -0.0001 9 8 3.9283 -0.6742 -0.0018 10 7 5.7723 0.5595 0.0015 11 6 6.5849 -0.5741 -0.1099 12 6 7.8097 -0.6189 0.5444 13 6 8.6143 -1.7358 0.4300 14 6 8.1989 -2.8154 -0.3266 15 6 6.9742 -2.7782 -0.9780 16 8 6.5674 -3.8402 -1.7220 17 6 7.4510 -4.9612 -1.7900 18 6 6.8269 -6.0501 -2.6651 19 6 7.7590 -7.2320 -2.7373 20 1 8.7020 -7.2091 -2.2114 21 6 7.4079 -8.3428 -3.4749 22 7 6.2598 -8.3706 -4.1158 23 14 8.5630 -9.8081 -3.5639 24 1 8.2528 -10.7508 -2.4594 25 1 8.3879 -10.4980 -4.8673 26 1 9.9667 -9.3405 -3.4362 27 6 6.1665 -1.6567 -0.8702 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.4776 2.4341 -1.8279 34 1 0.1339 2.1707 -0.6906 35 1 1.3351 3.4444 -0.3694 36 1 2.8412 1.2466 2.0959 37 1 2.5959 2.9880 1.5412 38 1 6.1744 1.4387 0.0801 39 1 8.1346 0.2216 1.1398 40 1 9.5677 -1.7673 0.9362 41 1 8.8282 -3.6890 -0.4106 42 1 8.4020 -4.6486 -2.2213 43 1 7.6184 -5.3533 -0.7868 44 1 5.8761 -6.3626 -2.2334 45 1 6.6591 -5.6583 -3.6683 46 1 6.0126 -9.1522 -4.6344 47 1 5.2132 -1.6259 -1.3768 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122520987.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:04 Heat of formation + Delta-G solvation = -36.631545 kcal Electronic energy + Delta-G solvation = -25657.499878 eV Core-core repulsion = 21998.991695 eV Total energy + Delta-G solvation = -3658.508183 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.93760 -39.60815 -38.16483 -36.82458 -34.56316 -33.32875 -32.43172 -30.85331 -29.70906 -29.05466 -28.47675 -25.22544 -24.67757 -23.98871 -22.68624 -22.02026 -20.84581 -20.12848 -19.22911 -18.14081 -17.34609 -16.39084 -16.02401 -15.58417 -15.46495 -15.32584 -15.23462 -14.93363 -14.57167 -14.40003 -14.23125 -13.70389 -13.46731 -13.20072 -12.98429 -12.72868 -12.46793 -12.30255 -12.14258 -12.04641 -11.74766 -11.66748 -11.39682 -11.36320 -11.11448 -10.91095 -10.78881 -10.52337 -10.42904 -10.27111 -10.04180 -9.80002 -9.63886 -9.57983 -9.26897 -8.42892 -8.21866 -7.79796 -6.07511 -4.12196 1.35868 1.65719 2.35646 2.78945 3.29257 3.34948 3.37791 3.41563 3.85307 3.99981 4.24816 4.34879 4.42977 4.45402 4.72644 4.78494 5.01620 5.15062 5.20709 5.23046 5.28716 5.32020 5.38739 5.39473 5.45034 5.48863 5.52315 5.60623 5.70301 5.73289 5.87398 5.92448 6.05295 6.06273 6.07466 6.16748 6.31068 6.37921 6.41798 6.55164 6.61809 6.77433 7.00734 7.25994 7.54397 7.68060 7.84298 8.00375 8.10330 8.26853 8.93465 9.51854 11.04115 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015565 B = 0.002474 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.441684 B =11315.403566 C =12854.437476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.080 4.080 3 C -0.084 4.084 4 C -0.124 4.124 5 C -0.147 4.147 6 C -0.191 4.191 7 H 0.124 0.876 8 C 0.538 3.462 9 O -0.503 6.503 10 N -0.670 5.670 11 C 0.179 3.821 12 C -0.197 4.197 13 C -0.061 4.061 14 C -0.227 4.227 15 C 0.165 3.835 16 O -0.312 6.312 17 C 0.065 3.935 18 C 0.025 3.975 19 C -0.526 4.526 20 H 0.058 0.942 21 C 0.060 3.940 22 N -0.889 5.889 23 Si 0.899 3.101 24 H -0.279 1.279 25 H -0.285 1.285 26 H -0.273 1.273 27 C -0.164 4.164 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.057 0.943 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.409 0.591 39 H 0.120 0.880 40 H 0.125 0.875 41 H 0.132 0.868 42 H 0.051 0.949 43 H 0.051 0.949 44 H 0.028 0.972 45 H 0.028 0.972 46 H 0.263 0.737 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.943 25.956 10.788 28.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.118 4.118 3 C -0.085 4.085 4 C -0.181 4.181 5 C -0.184 4.184 6 C -0.212 4.212 7 H 0.142 0.858 8 C 0.326 3.674 9 O -0.376 6.376 10 N -0.315 5.315 11 C 0.085 3.915 12 C -0.218 4.218 13 C -0.080 4.080 14 C -0.246 4.246 15 C 0.117 3.883 16 O -0.225 6.225 17 C -0.009 4.009 18 C -0.012 4.012 19 C -0.564 4.564 20 H 0.076 0.924 21 C -0.142 4.142 22 N -0.527 5.527 23 Si 0.726 3.274 24 H -0.205 1.205 25 H -0.211 1.211 26 H -0.198 1.198 27 C -0.185 4.185 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.118 0.882 37 H 0.122 0.878 38 H 0.245 0.755 39 H 0.138 0.862 40 H 0.143 0.857 41 H 0.149 0.851 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.046 0.954 45 H 0.046 0.954 46 H 0.073 0.927 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.660 25.029 10.526 27.736 hybrid contribution 1.254 -0.376 0.038 1.310 sum -4.406 24.652 10.563 27.180 Atomic orbital electron populations 1.21926 0.96301 1.01664 1.01314 1.21138 0.94417 0.92061 1.04144 1.21647 0.89839 0.97963 0.99031 1.21533 1.00100 0.96826 0.99650 1.23246 1.01511 1.02621 0.91042 1.22353 0.94324 0.98579 1.05953 0.85762 1.19875 0.81730 0.90217 0.75592 1.90795 1.73178 1.27125 1.46527 1.43460 1.05890 1.08953 1.73230 1.17287 0.90911 0.87581 0.95707 1.20616 0.95878 1.00470 1.04822 1.20661 0.98636 0.92080 0.96614 1.21384 0.97744 1.01349 1.04122 1.18954 0.91701 0.87936 0.89755 1.86191 1.47391 1.24427 1.64499 1.23349 0.92481 0.84213 1.00855 1.19129 0.97070 0.90325 0.94712 1.20971 1.04190 0.99966 1.31282 0.92354 1.24996 0.95373 0.98653 0.95204 1.69979 1.21411 1.29823 1.31532 0.86486 0.80999 0.82380 0.77506 1.20496 1.21058 1.19772 1.20257 1.02091 0.92492 1.03618 0.92529 0.92613 0.93041 0.90451 0.90885 0.91898 0.90665 0.92427 0.88169 0.87773 0.75491 0.86161 0.85725 0.85057 0.93054 0.93064 0.95353 0.95386 0.92710 0.84288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 8.92 37.16 0.33 -1.02 16 2 C -0.08 -0.87 4.36 -26.73 -0.12 -0.98 16 3 C -0.08 -0.71 2.47 -154.47 -0.38 -1.09 16 4 C -0.12 -0.80 9.49 37.16 0.35 -0.45 16 5 C -0.15 -1.05 9.53 -26.69 -0.25 -1.30 16 6 C -0.19 -1.57 5.91 -91.77 -0.54 -2.11 16 7 H 0.12 0.73 8.14 -51.93 -0.42 0.31 16 8 C 0.54 6.36 7.33 -10.98 -0.08 6.28 16 9 O -0.50 -7.96 10.79 5.55 0.06 -7.90 16 10 N -0.67 -7.07 5.34 -9.88 -0.05 -7.13 16 11 C 0.18 2.48 6.28 -83.72 -0.53 1.95 16 12 C -0.20 -2.40 9.96 -39.37 -0.39 -2.79 16 13 C -0.06 -0.80 10.03 -39.63 -0.40 -1.20 16 14 C -0.23 -3.66 9.04 -39.39 -0.36 -4.01 16 15 C 0.16 3.09 6.68 -39.24 -0.26 2.83 16 16 O -0.31 -6.88 10.13 -19.42 -0.20 -7.07 16 17 C 0.07 1.45 4.68 37.16 0.17 1.62 16 18 C 0.02 0.67 5.34 -27.88 -0.15 0.52 16 19 C -0.53 -14.93 9.11 -34.44 -0.31 -15.24 16 20 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 21 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 22 N -0.89 -26.94 13.29 55.43 0.74 -26.20 16 23 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 27 C -0.16 -2.84 8.59 -39.25 -0.34 -3.18 16 28 H 0.06 0.44 6.45 -51.93 -0.33 0.10 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 1.01 7.26 -51.93 -0.38 0.64 16 32 H 0.07 0.91 7.02 -51.93 -0.36 0.54 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.46 5.58 -51.93 -0.29 0.17 16 35 H 0.06 0.29 7.90 -51.93 -0.41 -0.12 16 36 H 0.10 0.81 8.05 -51.93 -0.42 0.39 16 37 H 0.10 0.52 8.05 -51.93 -0.42 0.10 16 38 H 0.41 2.73 8.82 -40.82 -0.36 2.37 16 39 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 40 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 41 H 0.13 2.06 6.29 -52.49 -0.33 1.73 16 42 H 0.05 1.07 7.66 -51.93 -0.40 0.68 16 43 H 0.05 1.08 7.66 -51.93 -0.40 0.69 16 44 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 47 H 0.14 2.61 6.42 -52.49 -0.34 2.28 16 LS Contribution 381.76 15.07 5.75 5.75 Total: -1.00 -33.16 381.76 -9.43 -42.59 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -7.36 Total: 1.99 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: -3.35 Total: -18.56 kcal Atomic # 7 Polarization: -34.01 SS G_CDS: 0.68 Total: -33.33 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -0.14 Total: -14.98 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.16 -9.43 -42.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122520987.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.954 kcal (2) G-P(sol) polarization free energy of solvation -33.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds