Wall clock time and date at job start Tue Mar 31 2020 12:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47042 * 2 1 4 4 C 1.53003 * 115.56318 * 325.69076 * 3 2 1 5 5 C 1.53075 * 117.50965 * 111.39508 * 3 2 1 6 6 C 1.53002 * 59.98523 * 107.47851 * 5 3 2 7 7 H 1.08997 * 117.49904 * 107.49978 * 6 5 3 8 8 C 1.50702 * 117.49576 * 252.50031 * 6 5 3 9 9 O 1.21283 * 120.00196 * 68.74671 * 8 6 5 10 10 N 1.34779 * 119.99722 * 248.73889 * 8 6 5 11 11 C 1.39917 * 119.99724 * 185.27455 * 10 8 6 12 12 C 1.38932 * 120.04165 * 213.57281 * 11 10 8 13 13 C 1.38127 * 120.03960 * 180.26028 * 12 11 10 14 14 C 1.38223 * 120.12242 * 359.49205 * 13 12 11 15 15 C 1.38763 * 120.08521 * 0.25280 * 14 13 12 16 16 O 1.35898 * 120.01923 * 179.97438 * 15 14 13 17 17 C 1.42898 * 116.99752 * 359.97438 * 16 15 14 18 18 C 1.53005 * 109.46626 * 179.97438 * 17 16 15 19 19 C 1.50700 * 109.46632 * 179.97438 * 18 17 16 20 20 H 1.07996 * 120.00497 * 0.02562 * 19 18 17 21 21 C 1.37882 * 119.99611 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00319 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99739 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47260 * 90.00323 * 23 21 19 25 25 H 1.48508 * 109.47075 * 209.99951 * 23 21 19 26 26 H 1.48500 * 109.47378 * 329.99423 * 23 21 19 27 27 C 1.38628 * 119.95796 * 0.02562 * 15 14 13 28 28 H 1.08997 * 109.47172 * 59.99093 * 1 2 3 29 29 H 1.08993 * 109.47238 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46715 * 299.99733 * 1 2 3 31 31 H 1.08999 * 109.46769 * 240.00639 * 2 1 3 32 32 H 1.08994 * 109.47135 * 120.00368 * 2 1 3 33 33 H 1.08997 * 109.47260 * 274.30427 * 4 3 2 34 34 H 1.08996 * 109.46681 * 34.31607 * 4 3 2 35 35 H 1.09005 * 109.46756 * 154.30773 * 4 3 2 36 36 H 1.08995 * 117.51922 * 359.97438 * 5 3 2 37 37 H 1.09006 * 117.51249 * 214.95357 * 5 3 2 38 38 H 0.96999 * 120.00112 * 5.28163 * 10 8 6 39 39 H 1.08001 * 119.98379 * 0.02562 * 12 11 10 40 40 H 1.07991 * 119.93946 * 179.76703 * 13 12 11 41 41 H 1.08001 * 119.95259 * 180.27559 * 14 13 12 42 42 H 1.09000 * 109.47312 * 299.99737 * 17 16 15 43 43 H 1.09000 * 109.47144 * 60.00195 * 17 16 15 44 44 H 1.08993 * 109.47312 * 300.00222 * 18 17 16 45 45 H 1.09000 * 109.47159 * 60.00255 * 18 17 16 46 46 H 0.97000 * 120.00588 * 180.02562 * 22 21 19 47 47 H 1.08001 * 120.06286 * 179.97438 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.1852 2.4450 -0.7780 5 6 2.7427 1.9440 1.2641 6 6 3.5551 1.6562 0.0000 7 1 3.9428 2.5107 -0.5546 8 6 4.4307 0.4297 -0.0001 9 8 3.9283 -0.6742 -0.0018 10 7 5.7723 0.5595 0.0015 11 6 6.5849 -0.5741 -0.1099 12 6 7.8097 -0.6189 0.5444 13 6 8.6143 -1.7358 0.4300 14 6 8.1989 -2.8154 -0.3266 15 6 6.9742 -2.7782 -0.9780 16 8 6.5674 -3.8402 -1.7220 17 6 7.4510 -4.9612 -1.7900 18 6 6.8269 -6.0501 -2.6651 19 6 7.7590 -7.2320 -2.7373 20 1 8.7020 -7.2091 -2.2114 21 6 7.4079 -8.3428 -3.4749 22 7 6.2598 -8.3706 -4.1158 23 14 8.5630 -9.8081 -3.5639 24 1 8.2528 -10.7508 -2.4594 25 1 8.3879 -10.4980 -4.8673 26 1 9.9667 -9.3405 -3.4362 27 6 6.1665 -1.6567 -0.8702 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.4776 2.4341 -1.8279 34 1 0.1339 2.1707 -0.6906 35 1 1.3351 3.4444 -0.3694 36 1 2.8412 1.2466 2.0959 37 1 2.5959 2.9880 1.5412 38 1 6.1744 1.4387 0.0801 39 1 8.1346 0.2216 1.1398 40 1 9.5677 -1.7673 0.9362 41 1 8.8282 -3.6890 -0.4106 42 1 8.4020 -4.6486 -2.2213 43 1 7.6184 -5.3533 -0.7868 44 1 5.8761 -6.3626 -2.2334 45 1 6.6591 -5.6583 -3.6683 46 1 6.0126 -9.1522 -4.6344 47 1 5.2132 -1.6259 -1.3768 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122520987.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:03 Heat of formation + Delta-G solvation = -56.419517 kcal Electronic energy + Delta-G solvation = -25658.357949 eV Core-core repulsion = 21998.991695 eV Total energy + Delta-G solvation = -3659.366254 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -41.91286 -40.84978 -39.22732 -37.96869 -35.75608 -35.36472 -33.20391 -32.62516 -31.09533 -30.33630 -29.08003 -27.06067 -25.75965 -24.72703 -23.85312 -23.58181 -22.22753 -21.23729 -20.08818 -19.42318 -18.39853 -18.20926 -17.18249 -17.01152 -16.88062 -16.74647 -16.40858 -16.18770 -15.73699 -15.35819 -15.16930 -14.67126 -14.47477 -14.36931 -14.29896 -14.11300 -14.02926 -13.39400 -13.29729 -13.08678 -12.83947 -12.75991 -12.66756 -12.58560 -12.57028 -12.23152 -12.08824 -11.84428 -11.79110 -11.60650 -11.43767 -11.23006 -11.07897 -10.84985 -10.64741 -10.47402 -9.44072 -9.03373 -8.28501 -6.43118 0.20209 0.45899 1.39307 1.42509 1.43779 1.53643 1.88389 2.28129 2.50860 2.70100 2.85078 3.05652 3.53387 3.67324 3.81796 3.88527 4.03291 4.12834 4.15358 4.18537 4.23380 4.23625 4.42306 4.43184 4.55106 4.57171 4.66218 4.69539 4.75611 4.82699 4.87582 4.95865 5.06293 5.13613 5.21576 5.23949 5.25418 5.27237 5.32105 5.38256 5.41103 5.42043 5.49095 5.58508 5.66113 5.89649 6.04301 6.40805 6.53340 6.71782 7.13461 7.27229 8.85070 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015565 B = 0.002474 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.441684 B =11315.403566 C =12854.437476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.078 4.078 3 C -0.099 4.099 4 C -0.119 4.119 5 C -0.126 4.126 6 C -0.189 4.189 7 H 0.158 0.842 8 C 0.529 3.471 9 O -0.552 6.552 10 N -0.655 5.655 11 C 0.181 3.819 12 C -0.176 4.176 13 C -0.052 4.052 14 C -0.236 4.236 15 C 0.124 3.876 16 O -0.346 6.346 17 C 0.085 3.915 18 C 0.027 3.973 19 C -0.545 4.545 20 H 0.074 0.926 21 C -0.001 4.001 22 N -0.933 5.933 23 Si 0.980 3.020 24 H -0.270 1.270 25 H -0.281 1.281 26 H -0.256 1.256 27 C -0.187 4.187 28 H 0.069 0.931 29 H 0.043 0.957 30 H 0.066 0.934 31 H 0.040 0.960 32 H 0.046 0.954 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.139 0.861 38 H 0.432 0.568 39 H 0.168 0.832 40 H 0.167 0.833 41 H 0.133 0.867 42 H 0.065 0.935 43 H 0.061 0.939 44 H -0.007 1.007 45 H -0.003 1.003 46 H 0.267 0.733 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.644 28.957 12.854 31.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.116 4.116 3 C -0.100 4.100 4 C -0.176 4.176 5 C -0.163 4.163 6 C -0.210 4.210 7 H 0.176 0.824 8 C 0.319 3.681 9 O -0.429 6.429 10 N -0.302 5.302 11 C 0.086 3.914 12 C -0.196 4.196 13 C -0.070 4.070 14 C -0.255 4.255 15 C 0.078 3.922 16 O -0.261 6.261 17 C 0.011 3.989 18 C -0.010 4.010 19 C -0.583 4.583 20 H 0.092 0.908 21 C -0.200 4.200 22 N -0.573 5.573 23 Si 0.803 3.197 24 H -0.195 1.195 25 H -0.206 1.206 26 H -0.180 1.180 27 C -0.208 4.208 28 H 0.088 0.912 29 H 0.062 0.938 30 H 0.085 0.915 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.157 0.843 38 H 0.272 0.728 39 H 0.186 0.814 40 H 0.184 0.816 41 H 0.151 0.849 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.012 0.988 45 H 0.015 0.985 46 H 0.076 0.924 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.341 28.100 12.611 30.981 hybrid contribution 0.482 -1.188 -0.544 1.393 sum -2.859 26.913 12.068 29.633 Atomic orbital electron populations 1.21892 0.94750 1.01384 1.02666 1.20985 0.95792 0.93730 1.01078 1.21698 0.90397 0.96805 1.01093 1.21529 0.99633 0.97239 0.99183 1.23333 0.99183 1.04060 0.89714 1.22438 0.93411 0.97616 1.07552 0.82446 1.20668 0.82301 0.90813 0.74320 1.90802 1.74086 1.29444 1.48575 1.43397 1.05398 1.09124 1.72300 1.17442 0.91930 0.87416 0.94648 1.21135 0.94085 1.01344 1.03041 1.21152 1.00035 0.90794 0.95039 1.21527 0.96572 1.02820 1.04592 1.19263 0.93804 0.87509 0.91656 1.86095 1.48125 1.25442 1.66433 1.22900 0.92246 0.83580 1.00200 1.18978 0.96047 0.92180 0.93782 1.21393 1.04833 1.00479 1.31595 0.90802 1.26117 0.97174 1.02232 0.94429 1.70138 1.23681 1.31064 1.32383 0.85226 0.78967 0.77794 0.77716 1.19516 1.20608 1.18029 1.20222 1.01238 0.94015 1.05376 0.91239 0.93801 0.91462 0.94133 0.93536 0.92279 0.90468 0.89997 0.89567 0.84258 0.72803 0.81427 0.81600 0.84939 0.91651 0.92090 0.98822 0.98504 0.92411 0.87340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 8.92 71.98 0.64 -2.09 16 2 C -0.08 -1.83 4.36 30.60 0.13 -1.70 16 3 C -0.10 -1.59 2.47 -52.15 -0.13 -1.72 16 4 C -0.12 -1.27 9.49 71.98 0.68 -0.58 16 5 C -0.13 -1.48 9.53 30.62 0.29 -1.19 16 6 C -0.19 -2.78 5.91 -11.54 -0.07 -2.84 16 7 H 0.16 1.26 8.14 -2.39 -0.02 1.24 16 8 C 0.53 12.58 7.33 87.66 0.64 13.22 16 9 O -0.55 -19.03 10.79 -3.04 -0.03 -19.06 16 10 N -0.66 -12.81 5.34 -303.55 -1.62 -14.43 16 11 C 0.18 4.82 6.28 38.14 0.24 5.06 16 12 C -0.18 -3.63 9.96 22.41 0.22 -3.40 16 13 C -0.05 -1.18 10.03 22.24 0.22 -0.96 16 14 C -0.24 -7.50 9.04 22.39 0.20 -7.29 16 15 C 0.12 4.91 6.68 22.49 0.15 5.06 16 16 O -0.35 -16.57 10.13 -92.40 -0.94 -17.51 16 17 C 0.08 3.99 4.68 71.98 0.34 4.33 16 18 C 0.03 1.58 5.34 29.85 0.16 1.74 16 19 C -0.55 -31.83 9.11 25.60 0.23 -31.60 16 20 H 0.07 3.98 7.74 -2.91 -0.02 3.96 16 21 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 22 N -0.93 -58.75 13.29 21.45 0.28 -58.46 16 23 Si 0.98 44.50 29.54 68.60 2.03 46.53 16 24 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 25 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 26 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 27 C -0.19 -6.92 8.59 22.49 0.19 -6.73 16 28 H 0.07 1.07 6.45 -2.39 -0.02 1.06 16 29 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 31 H 0.04 1.22 7.26 -2.39 -0.02 1.20 16 32 H 0.05 1.29 7.02 -2.39 -0.02 1.28 16 33 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.08 0.79 5.58 -2.39 -0.01 0.78 16 35 H 0.08 0.49 7.90 -2.38 -0.02 0.48 16 36 H 0.09 1.29 8.05 -2.39 -0.02 1.27 16 37 H 0.14 0.71 8.05 -2.38 -0.02 0.69 16 38 H 0.43 4.28 8.82 -92.71 -0.82 3.47 16 39 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 40 H 0.17 2.46 8.06 -2.92 -0.02 2.43 16 41 H 0.13 4.09 6.29 -2.91 -0.02 4.07 16 42 H 0.07 2.83 7.66 -2.39 -0.02 2.81 16 43 H 0.06 2.69 7.66 -2.39 -0.02 2.67 16 44 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 45 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 46 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 47 H 0.11 4.59 6.42 -2.91 -0.02 4.57 16 Total: -1.00 -80.19 381.76 4.49 -75.70 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: 0.15 Total: 17.53 kcal Atomic # 6 Polarization: -34.91 SS G_CDS: 4.62 Total: -30.29 kcal Atomic # 7 Polarization: -71.56 SS G_CDS: -1.34 Total: -72.90 kcal Atomic # 8 Polarization: -35.60 SS G_CDS: -0.97 Total: -36.57 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -80.19 4.49 -75.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122520987.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.280 kcal (2) G-P(sol) polarization free energy of solvation -80.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds