Wall clock time and date at job start Tue Mar 31 2020 12:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50696 * 109.47359 * 2 1 4 4 C 1.38267 * 119.94147 * 89.99893 * 3 2 1 5 5 C 1.38146 * 120.05212 * 180.02562 * 4 3 2 6 6 C 1.38732 * 119.95012 * 0.02562 * 5 4 3 7 7 O 1.35902 * 120.05993 * 179.97438 * 6 5 4 8 8 C 1.42898 * 117.00012 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.46962 * 180.02562 * 8 7 6 10 10 O 1.21294 * 120.00035 * 0.02562 * 9 8 7 11 11 N 1.34775 * 119.99878 * 179.97438 * 9 8 7 12 12 C 1.37095 * 119.99850 * 179.97438 * 11 9 8 13 13 H 1.08004 * 119.99948 * 137.56239 * 12 11 9 14 14 C 1.38950 * 120.00581 * 317.56194 * 12 11 9 15 15 N 1.31413 * 119.99529 * 339.87443 * 14 12 11 16 16 Si 1.86797 * 120.00449 * 159.86858 * 14 12 11 17 17 H 1.48500 * 109.46968 * 60.00181 * 16 14 12 18 18 H 1.48491 * 109.47338 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47396 * 300.00728 * 16 14 12 20 20 C 1.46497 * 119.99966 * 0.02562 * 11 9 8 21 21 C 1.54275 * 110.03303 * 119.85816 * 20 11 9 22 22 C 1.54969 * 104.15629 * 95.75318 * 21 20 11 23 23 C 1.54886 * 102.77858 * 37.89059 * 22 21 20 24 24 C 1.53876 * 110.03127 * 237.07525 * 20 11 9 25 25 C 1.38729 * 119.88232 * 0.27904 * 6 5 4 26 26 C 1.38146 * 119.94638 * 359.46656 * 25 6 5 27 27 H 1.08995 * 109.47224 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46496 * 299.99483 * 1 2 3 29 29 H 1.09002 * 109.47141 * 59.99369 * 1 2 3 30 30 H 1.09008 * 109.46874 * 240.00298 * 2 1 3 31 31 H 1.09002 * 109.47141 * 120.00631 * 2 1 3 32 32 H 1.07995 * 119.97614 * 0.03267 * 4 3 2 33 33 H 1.08005 * 120.02773 * 179.97438 * 5 4 3 34 34 H 1.08996 * 109.46827 * 60.00056 * 8 7 6 35 35 H 1.09006 * 109.47218 * 300.00182 * 8 7 6 36 36 H 0.97003 * 120.00038 * 175.10972 * 15 14 12 37 37 H 1.09001 * 110.01903 * 358.46788 * 20 11 9 38 38 H 1.08995 * 110.48798 * 214.39916 * 21 20 11 39 39 H 1.09000 * 110.48523 * 337.04635 * 21 20 11 40 40 H 1.09004 * 110.71996 * 279.57434 * 22 21 20 41 41 H 1.08998 * 110.91831 * 156.30020 * 22 21 20 42 42 H 1.09005 * 110.48576 * 203.40230 * 23 22 21 43 43 H 1.08999 * 110.59641 * 80.81777 * 23 22 21 44 44 H 1.08999 * 110.03368 * 359.95152 * 24 20 11 45 45 H 1.09003 * 110.03022 * 121.38551 * 24 20 11 46 46 H 1.08007 * 120.02801 * 179.71652 * 25 6 5 47 47 H 1.08000 * 119.97192 * 180.23358 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2624 2.0714 1.1981 5 6 2.7225 3.3740 1.2008 6 6 2.9532 4.0295 0.0001 7 8 3.4052 5.3112 0.0001 8 6 3.6200 5.9234 -1.2731 9 6 4.1177 7.3320 -1.0756 10 8 4.2737 7.7685 0.0453 11 7 4.3905 8.1064 -2.1444 12 6 4.8428 9.3880 -1.9647 13 1 5.6460 9.7682 -2.5785 14 6 4.2679 10.1979 -0.9930 15 7 3.0726 9.9158 -0.5256 16 14 5.1942 11.6876 -0.3509 17 1 5.4741 12.6182 -1.4738 18 1 4.3702 12.3796 0.6724 19 1 6.4750 11.2490 0.2593 20 6 4.2027 7.5789 -3.4982 21 6 3.1719 8.4364 -4.2612 22 6 4.0356 9.4404 -5.0659 23 6 5.2459 8.5782 -5.5024 24 6 5.5210 7.6692 -4.2866 25 6 2.7155 3.3766 -1.2006 26 6 2.2605 2.0722 -1.1980 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 2.0825 1.5609 2.1326 33 1 2.9016 3.8820 2.1369 34 1 2.6828 5.9434 -1.8293 35 1 4.3614 5.3513 -1.8310 36 1 2.7006 10.4383 0.2022 37 1 3.8656 6.5434 -3.4517 38 1 2.5826 7.8147 -4.9351 39 1 2.5231 8.9646 -3.5624 40 1 4.3583 10.2663 -4.4318 41 1 3.4925 9.8119 -5.9348 42 1 6.1097 9.2101 -5.7094 43 1 4.9942 7.9791 -6.3775 44 1 6.3003 8.1063 -3.6623 45 1 5.8236 6.6775 -4.6229 46 1 2.8899 3.8862 -2.1368 47 1 2.0790 1.5622 -2.1326 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125389804.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:37 Heat of formation + Delta-G solvation = -49.195262 kcal Electronic energy + Delta-G solvation = -26889.430910 eV Core-core repulsion = 23230.377923 eV Total energy + Delta-G solvation = -3659.052987 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.01905 -38.90923 -37.59035 -36.39580 -33.56365 -33.12241 -31.65896 -30.93894 -28.99176 -28.05066 -27.67524 -26.96801 -24.35474 -23.52294 -22.57641 -20.81679 -20.27416 -19.86150 -19.14134 -17.91602 -16.56938 -15.96050 -15.67543 -15.50758 -15.47023 -14.88445 -14.45466 -14.44965 -14.11721 -13.84631 -13.60590 -13.46182 -13.25185 -13.17587 -12.78746 -12.60261 -12.37887 -11.89559 -11.72662 -11.40949 -11.20060 -11.05899 -11.01890 -10.89538 -10.71388 -10.67345 -10.58677 -10.55885 -10.41906 -10.38470 -10.26817 -9.95715 -9.81142 -8.89517 -8.72271 -8.06959 -7.85006 -7.14159 -6.08893 -3.84372 1.45170 1.56053 3.31312 3.41221 3.43295 3.47158 3.86217 4.13006 4.38176 4.75569 4.79118 4.92573 5.00450 5.11127 5.19237 5.21435 5.25673 5.32625 5.38408 5.43837 5.46502 5.52041 5.60306 5.73551 5.78360 5.79632 5.83899 5.89853 5.90480 6.06101 6.07150 6.14790 6.19396 6.22424 6.30217 6.41283 6.45405 6.47347 6.53701 6.60632 6.69275 6.86525 6.92618 6.98708 7.12841 7.64096 7.75267 8.28225 9.03344 9.16544 9.64372 10.24421 10.98700 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016020 B = 0.003423 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.382310 B = 8178.188384 C = 9434.529594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.077 4.077 3 C -0.135 4.135 4 C -0.078 4.078 5 C -0.152 4.152 6 C 0.138 3.862 7 O -0.283 6.283 8 C 0.048 3.952 9 C 0.475 3.525 10 O -0.514 6.514 11 N -0.442 5.442 12 C -0.337 4.337 13 H 0.081 0.919 14 C 0.073 3.927 15 N -0.829 5.829 16 Si 0.904 3.096 17 H -0.278 1.278 18 H -0.287 1.287 19 H -0.275 1.275 20 C 0.127 3.873 21 C -0.123 4.123 22 C -0.116 4.116 23 C -0.118 4.118 24 C -0.131 4.131 25 C -0.211 4.211 26 C -0.077 4.077 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.124 0.876 33 H 0.130 0.870 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.265 0.735 37 H 0.061 0.939 38 H 0.050 0.950 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.049 0.951 42 H 0.056 0.944 43 H 0.053 0.947 44 H 0.078 0.922 45 H 0.052 0.948 46 H 0.127 0.873 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.597 -14.871 -5.708 16.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.114 4.114 3 C -0.135 4.135 4 C -0.096 4.096 5 C -0.171 4.171 6 C 0.091 3.909 7 O -0.195 6.195 8 C -0.031 4.031 9 C 0.260 3.740 10 O -0.389 6.389 11 N -0.166 5.166 12 C -0.463 4.463 13 H 0.099 0.901 14 C -0.138 4.138 15 N -0.462 5.462 16 Si 0.731 3.269 17 H -0.204 1.204 18 H -0.213 1.213 19 H -0.201 1.201 20 C 0.022 3.978 21 C -0.162 4.162 22 C -0.154 4.154 23 C -0.156 4.156 24 C -0.170 4.170 25 C -0.230 4.230 26 C -0.095 4.095 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.142 0.858 33 H 0.148 0.852 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.096 0.904 45 H 0.071 0.929 46 H 0.145 0.855 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.652 -14.410 -4.853 15.435 hybrid contribution 0.263 0.654 -0.002 0.705 sum -2.388 -13.756 -4.855 14.782 Atomic orbital electron populations 1.21770 0.95145 1.01271 1.02281 1.20419 0.95844 0.92773 1.02355 1.19705 1.03974 0.96737 0.93128 1.20767 0.97802 0.93534 0.97545 1.20457 1.04972 0.95041 0.96630 1.19242 0.93139 0.84454 0.94093 1.86240 1.79230 1.22916 1.31091 1.22764 1.00626 0.95772 0.83975 1.19359 0.83888 0.84394 0.86337 1.90563 1.52285 1.72850 1.23238 1.43225 1.60657 1.11567 1.01148 1.18764 1.16980 0.87161 1.23391 0.90132 1.25144 0.93604 0.97266 0.97772 1.69868 1.13075 1.39678 1.23599 0.86420 0.80204 0.81650 0.78667 1.20413 1.21313 1.20096 1.21738 0.94368 0.95824 0.85847 1.22583 0.97729 0.97561 0.98299 1.22452 0.95622 0.98798 0.98516 1.22274 0.98456 0.97851 0.97036 1.22500 0.98968 0.98702 0.96816 1.21288 1.07641 0.96776 0.97322 1.20749 0.97574 0.93753 0.97446 0.92761 0.92579 0.92626 0.91456 0.91408 0.85799 0.85164 0.91008 0.91149 0.92520 0.92084 0.93092 0.89976 0.90046 0.93213 0.92481 0.92782 0.90362 0.92880 0.85515 0.86211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.90 37.16 0.37 -0.84 16 2 C -0.08 -0.68 6.06 -27.88 -0.17 -0.85 16 3 C -0.14 -1.60 5.13 -104.60 -0.54 -2.13 16 4 C -0.08 -0.99 9.69 -39.60 -0.38 -1.37 16 5 C -0.15 -2.35 9.99 -39.43 -0.39 -2.74 16 6 C 0.14 2.39 6.69 -39.22 -0.26 2.12 16 7 O -0.28 -6.02 9.67 -39.34 -0.38 -6.40 16 8 C 0.05 0.96 3.53 36.00 0.13 1.09 16 9 C 0.47 12.09 7.05 -10.99 -0.08 12.01 16 10 O -0.51 -15.55 14.16 -14.37 -0.20 -15.75 16 11 N -0.44 -10.55 2.40 -106.54 -0.26 -10.81 16 12 C -0.34 -8.78 6.97 -14.93 -0.10 -8.88 16 13 H 0.08 2.03 6.88 -52.48 -0.36 1.67 16 14 C 0.07 2.01 4.32 -17.47 -0.08 1.93 16 15 N -0.83 -24.28 11.71 55.50 0.65 -23.63 16 16 Si 0.90 21.78 29.60 -169.99 -5.03 16.75 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 C 0.13 2.38 3.26 -66.81 -0.22 2.17 16 21 C -0.12 -2.21 6.13 -25.02 -0.15 -2.37 16 22 C -0.12 -1.93 6.56 -24.70 -0.16 -2.09 16 23 C -0.12 -1.74 6.83 -25.07 -0.17 -1.91 16 24 C -0.13 -2.16 6.19 -25.61 -0.16 -2.32 16 25 C -0.21 -3.10 9.04 -39.43 -0.36 -3.46 16 26 C -0.08 -0.96 9.69 -39.61 -0.38 -1.34 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.54 8.09 -51.92 -0.42 0.12 16 31 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 32 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.13 1.96 8.06 -52.48 -0.42 1.53 16 34 H 0.07 1.33 7.33 -51.93 -0.38 0.95 16 35 H 0.07 1.21 7.30 -51.93 -0.38 0.83 16 36 H 0.26 7.60 8.32 -40.82 -0.34 7.26 16 37 H 0.06 1.01 5.83 -51.93 -0.30 0.71 16 38 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.08 1.78 8.02 -51.93 -0.42 1.36 16 40 H 0.08 1.55 7.16 -51.93 -0.37 1.18 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.08 1.45 6.82 -51.93 -0.35 1.10 16 45 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.13 1.70 6.30 -52.48 -0.33 1.37 16 47 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 375.33 15.07 5.66 5.66 Total: -1.00 -32.46 375.33 -10.20 -42.66 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -7.52 Total: 2.53 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: -3.11 Total: -10.99 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: 0.39 Total: -34.44 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.58 Total: -22.16 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.46 -10.20 -42.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125389804.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.539 kcal (2) G-P(sol) polarization free energy of solvation -32.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds