Wall clock time and date at job start Tue Mar 31 2020 12:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.53006 * 109.47164 * 120.00099 * 2 1 3 5 5 C 1.52997 * 109.47164 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.46975 * 179.97438 * 5 4 2 7 7 C 1.53005 * 109.47245 * 60.00405 * 6 5 4 8 8 C 1.52993 * 109.46886 * 59.99636 * 7 6 5 9 9 N 1.46494 * 109.47268 * 65.00648 * 8 7 6 10 10 S 1.65601 * 120.00318 * 164.99950 * 9 8 7 11 11 O 1.42101 * 104.27992 * 181.07046 * 10 9 8 12 12 O 1.42104 * 104.27550 * 308.92863 * 10 9 8 13 13 C 1.81406 * 104.45168 * 64.99422 * 10 9 8 14 14 C 1.52995 * 109.47220 * 179.97438 * 13 10 9 15 15 C 1.50693 * 109.47085 * 179.97438 * 14 13 10 16 16 H 1.07999 * 120.00031 * 0.02562 * 15 14 13 17 17 C 1.37884 * 120.00306 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99645 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00425 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47619 * 89.99442 * 19 17 15 21 21 H 1.48500 * 109.47208 * 210.00020 * 19 17 15 22 22 H 1.48501 * 109.46679 * 329.99768 * 19 17 15 23 23 C 1.53000 * 109.46632 * 300.00027 * 7 6 5 24 24 C 1.52996 * 109.47518 * 59.99681 * 23 7 6 25 25 H 1.09001 * 109.47375 * 299.99867 * 1 2 3 26 26 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 27 27 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47375 * 240.00133 * 2 1 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 31 31 H 1.09001 * 109.47289 * 60.00075 * 3 2 1 32 32 H 1.09001 * 109.46998 * 299.99705 * 4 2 1 33 33 H 1.09001 * 109.47375 * 300.00034 * 5 4 2 34 34 H 1.09000 * 109.47140 * 60.00051 * 5 4 2 35 35 H 1.09001 * 109.47367 * 299.99815 * 6 5 4 36 36 H 1.09004 * 109.47108 * 180.02562 * 6 5 4 37 37 H 1.08992 * 109.47199 * 180.02562 * 7 6 5 38 38 H 1.09008 * 109.46821 * 185.00428 * 8 7 6 39 39 H 1.09006 * 109.47709 * 305.00138 * 8 7 6 40 40 H 0.96999 * 120.00105 * 344.99339 * 9 8 7 41 41 H 1.08996 * 109.46941 * 300.00793 * 13 10 9 42 42 H 1.09004 * 109.46615 * 60.00297 * 13 10 9 43 43 H 1.09001 * 109.47673 * 300.00734 * 14 13 10 44 44 H 1.09004 * 109.47053 * 60.00603 * 14 13 10 45 45 H 0.97005 * 119.99892 * 180.02562 * 18 17 15 46 46 H 1.09001 * 109.47194 * 299.99548 * 23 7 6 47 47 H 1.09000 * 109.46968 * 179.97438 * 23 7 6 48 48 H 1.08996 * 109.47452 * 180.02562 * 24 23 7 49 49 H 1.09001 * 109.46997 * 59.99746 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5700 -0.7219 1.2490 6 6 4.0799 -1.4426 2.4985 7 6 3.5695 -2.8849 2.4994 8 6 4.0790 -3.6070 1.2505 9 7 5.5389 -3.7126 1.3089 10 16 6.3348 -4.7559 0.2988 11 8 7.7036 -4.6092 0.6510 12 8 5.6619 -5.9952 0.4742 13 6 6.0310 -4.0966 -1.3637 14 6 6.7242 -4.9844 -2.3990 15 6 6.4713 -4.4370 -3.7801 16 1 5.8760 -3.5449 -3.9067 17 6 6.9999 -5.0752 -4.8821 18 7 7.7243 -6.1619 -4.7280 19 14 6.6870 -4.3963 -6.5940 20 1 7.7593 -3.4319 -6.9478 21 1 6.6804 -5.5110 -7.5751 22 1 5.3723 -3.7062 -6.6201 23 6 2.0395 -2.8843 2.4996 24 6 1.5295 -2.1636 1.2502 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 -0.2074 2.1393 33 1 3.9330 -1.2359 0.3590 34 1 3.9337 0.3057 1.2488 35 1 3.7170 -0.9281 3.3883 36 1 5.1700 -1.4426 2.4985 37 1 3.9324 -3.3982 3.3898 38 1 3.6439 -4.6054 1.2052 39 1 3.7906 -3.0444 0.3624 40 1 6.0395 -3.1714 1.9393 41 1 4.9585 -4.0806 -1.5578 42 1 6.4274 -3.0834 -1.4307 43 1 7.7966 -5.0000 -2.2047 44 1 6.3281 -5.9978 -2.3322 45 1 8.0965 -6.6107 -5.5033 46 1 1.6764 -2.3699 3.3894 47 1 1.6757 -3.9119 2.4998 48 1 0.4395 -2.1628 1.2506 49 1 1.8925 -2.6780 0.3604 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126143970.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:41 Heat of formation + Delta-G solvation = -124.409684 kcal Electronic energy + Delta-G solvation = -25898.234761 eV Core-core repulsion = 22371.364184 eV Total energy + Delta-G solvation = -3526.870578 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -39.96529 -36.61922 -36.31306 -35.39505 -33.87915 -33.70128 -31.14950 -31.12886 -29.69368 -27.36738 -25.60900 -25.56374 -22.89317 -22.55636 -21.62967 -20.04094 -19.14247 -18.84602 -17.38963 -16.49336 -16.33847 -15.95539 -15.38568 -14.97922 -14.72563 -14.58350 -14.54610 -14.13044 -13.69147 -13.56286 -13.44980 -13.17474 -12.92409 -12.52547 -12.48089 -12.44504 -11.99004 -11.79873 -11.74011 -11.55900 -11.47249 -11.30484 -11.26941 -11.21514 -11.15041 -11.07725 -10.94821 -10.77277 -10.45685 -10.39285 -10.36899 -10.07270 -10.01043 -9.74722 -9.39962 -8.96114 -8.49590 -6.11721 -4.17152 0.83868 3.20637 3.26290 3.32547 3.35140 4.26832 4.33966 4.38739 4.44664 4.53655 4.68018 4.75234 4.84934 4.90300 5.01478 5.14935 5.22142 5.23555 5.32389 5.34939 5.37154 5.39762 5.45120 5.47631 5.47750 5.64586 5.68048 5.71997 5.72850 5.75221 5.81892 5.83325 5.90511 5.95215 6.00553 6.05976 6.09031 6.17086 6.21618 6.30168 6.38394 6.50471 7.15603 7.31465 7.37861 7.81247 8.18578 8.86203 9.47497 10.99356 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011074 B = 0.003914 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2527.757595 B = 7152.869254 C = 8957.096907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.095 4.095 3 C -0.149 4.149 4 C -0.079 4.079 5 C -0.123 4.123 6 C -0.114 4.114 7 C -0.093 4.093 8 C 0.115 3.885 9 N -1.127 6.127 10 S 2.593 3.407 11 O -0.970 6.970 12 O -0.968 6.968 13 C -0.589 4.589 14 C 0.028 3.972 15 C -0.519 4.519 16 H 0.061 0.939 17 C 0.058 3.942 18 N -0.890 5.890 19 Si 0.899 3.101 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.273 1.273 23 C -0.112 4.112 24 C -0.123 4.123 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.410 0.590 41 H 0.117 0.883 42 H 0.120 0.880 43 H 0.033 0.967 44 H 0.033 0.967 45 H 0.265 0.735 46 H 0.064 0.936 47 H 0.066 0.934 48 H 0.065 0.935 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.805 13.187 14.736 24.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.114 4.114 3 C -0.206 4.206 4 C -0.098 4.098 5 C -0.160 4.160 6 C -0.152 4.152 7 C -0.113 4.113 8 C -0.011 4.011 9 N -0.885 5.885 10 S 2.690 3.310 11 O -0.960 6.960 12 O -0.958 6.958 13 C -0.723 4.723 14 C -0.011 4.011 15 C -0.559 4.559 16 H 0.079 0.921 17 C -0.145 4.145 18 N -0.529 5.529 19 Si 0.727 3.273 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.198 1.198 23 C -0.150 4.150 24 C -0.161 4.161 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.244 0.756 41 H 0.136 0.864 42 H 0.138 0.862 43 H 0.051 0.949 44 H 0.052 0.948 45 H 0.075 0.925 46 H 0.083 0.917 47 H 0.085 0.915 48 H 0.083 0.917 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.331 12.158 14.831 23.356 hybrid contribution -0.199 1.079 -1.109 1.560 sum -13.530 13.236 13.722 23.378 Atomic orbital electron populations 1.21893 0.95491 1.01835 1.01382 1.21170 0.95561 0.96164 0.98481 1.21894 1.01359 0.96021 1.01366 1.21185 0.95315 0.95571 0.97698 1.21737 0.95095 1.00549 0.98651 1.21557 1.00449 0.94876 0.98326 1.21309 0.95841 0.96142 0.97975 1.21475 0.79512 1.01170 0.98942 1.55786 1.15203 1.62606 1.54883 1.05507 0.73564 0.74504 0.77402 1.93548 1.33372 1.86379 1.82694 1.93535 1.75430 1.41457 1.85390 1.30436 1.10462 1.12130 1.19233 1.18958 0.95718 0.93849 0.92601 1.20998 1.33270 1.11612 0.90014 0.92080 1.25065 0.94933 0.94880 0.99584 1.69958 1.33863 1.18293 1.30738 0.86479 0.78685 0.78608 0.83567 1.20478 1.21008 1.19777 1.21530 0.94263 1.00816 0.98431 1.21741 1.00473 0.95348 0.98492 0.92990 0.92979 0.92317 0.90988 0.92269 0.92962 0.93007 0.91475 0.91141 0.91716 0.91943 0.91778 0.90458 0.90411 0.91275 0.75578 0.86415 0.86160 0.94866 0.94841 0.92543 0.91728 0.91549 0.91651 0.91339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 8.84 37.16 0.33 -0.75 16 2 C -0.10 -0.75 2.51 -90.62 -0.23 -0.98 16 3 C -0.15 -1.13 8.84 37.16 0.33 -0.80 16 4 C -0.08 -0.61 1.77 -90.62 -0.16 -0.77 16 5 C -0.12 -1.02 4.58 -26.73 -0.12 -1.14 16 6 C -0.11 -0.92 5.32 -26.73 -0.14 -1.06 16 7 C -0.09 -0.81 2.77 -90.62 -0.25 -1.06 16 8 C 0.12 1.28 4.81 -4.05 -0.02 1.26 16 9 N -1.13 -14.40 5.76 -10.62 -0.06 -14.46 16 10 S 2.59 46.39 5.46 -107.50 -0.59 45.80 16 11 O -0.97 -20.27 18.08 -57.54 -1.04 -21.31 16 12 O -0.97 -20.26 17.50 -57.54 -1.01 -21.26 16 13 C -0.59 -11.21 6.01 37.15 0.22 -10.98 16 14 C 0.03 0.71 4.98 -27.89 -0.14 0.57 16 15 C -0.52 -14.34 9.11 -34.44 -0.31 -14.65 16 16 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.89 -26.53 13.29 55.43 0.74 -25.80 16 19 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 23 C -0.11 -0.87 5.45 -26.73 -0.15 -1.01 16 24 C -0.12 -0.96 4.58 -26.73 -0.12 -1.09 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.42 6.43 -51.93 -0.33 0.08 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.46 6.43 -51.93 -0.33 0.12 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.66 6.32 -51.93 -0.33 0.33 16 34 H 0.06 0.51 6.43 -51.93 -0.33 0.18 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.52 6.90 -51.93 -0.36 0.16 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.93 7.69 -51.92 -0.40 0.53 16 39 H 0.07 0.71 4.83 -51.93 -0.25 0.46 16 40 H 0.41 4.46 7.37 -34.47 -0.25 4.21 16 41 H 0.12 2.00 8.14 -51.93 -0.42 1.57 16 42 H 0.12 2.06 8.14 -51.92 -0.42 1.64 16 43 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 46 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.06 0.47 6.43 -51.93 -0.33 0.14 16 49 H 0.07 0.59 6.54 -51.93 -0.34 0.25 16 LS Contribution 381.39 15.07 5.75 5.75 Total: -1.00 -34.00 381.39 -10.82 -44.82 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -8.73 Total: 1.20 kcal Atomic # 6 Polarization: -30.06 SS G_CDS: -0.86 Total: -30.92 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: 0.68 Total: -40.26 kcal Atomic # 8 Polarization: -40.52 SS G_CDS: -2.05 Total: -42.57 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 46.39 SS G_CDS: -0.59 Total: 45.80 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.00 -10.82 -44.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126143970.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.587 kcal (2) G-P(sol) polarization free energy of solvation -34.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds