Wall clock time and date at job start Tue Mar 31 2020 12:29:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52997 * 109.47232 * 2 1
4 4 C 1.53006 * 109.47164 * 120.00099 * 2 1 3
5 5 C 1.52997 * 109.47164 * 179.97438 * 4 2 1
6 6 C 1.52996 * 109.46975 * 179.97438 * 5 4 2
7 7 C 1.53005 * 109.47245 * 60.00405 * 6 5 4
8 8 C 1.52993 * 109.46886 * 59.99636 * 7 6 5
9 9 N 1.46494 * 109.47268 * 65.00648 * 8 7 6
10 10 S 1.65601 * 120.00318 * 164.99950 * 9 8 7
11 11 O 1.42101 * 104.27992 * 181.07046 * 10 9 8
12 12 O 1.42104 * 104.27550 * 308.92863 * 10 9 8
13 13 C 1.81406 * 104.45168 * 64.99422 * 10 9 8
14 14 C 1.52995 * 109.47220 * 179.97438 * 13 10 9
15 15 C 1.50693 * 109.47085 * 179.97438 * 14 13 10
16 16 H 1.07999 * 120.00031 * 0.02562 * 15 14 13
17 17 C 1.37884 * 120.00306 * 180.02562 * 15 14 13
18 18 N 1.31515 * 119.99645 * 0.02562 * 17 15 14
19 19 Si 1.86797 * 120.00425 * 180.02562 * 17 15 14
20 20 H 1.48495 * 109.47619 * 89.99442 * 19 17 15
21 21 H 1.48500 * 109.47208 * 210.00020 * 19 17 15
22 22 H 1.48501 * 109.46679 * 329.99768 * 19 17 15
23 23 C 1.53000 * 109.46632 * 300.00027 * 7 6 5
24 24 C 1.52996 * 109.47518 * 59.99681 * 23 7 6
25 25 H 1.09001 * 109.47375 * 299.99867 * 1 2 3
26 26 H 1.09002 * 109.46777 * 60.00422 * 1 2 3
27 27 H 1.09000 * 109.47140 * 179.97438 * 1 2 3
28 28 H 1.09001 * 109.47375 * 240.00133 * 2 1 3
29 29 H 1.09004 * 109.47261 * 179.97438 * 3 2 1
30 30 H 1.09002 * 109.47153 * 299.99992 * 3 2 1
31 31 H 1.09001 * 109.47289 * 60.00075 * 3 2 1
32 32 H 1.09001 * 109.46998 * 299.99705 * 4 2 1
33 33 H 1.09001 * 109.47375 * 300.00034 * 5 4 2
34 34 H 1.09000 * 109.47140 * 60.00051 * 5 4 2
35 35 H 1.09001 * 109.47367 * 299.99815 * 6 5 4
36 36 H 1.09004 * 109.47108 * 180.02562 * 6 5 4
37 37 H 1.08992 * 109.47199 * 180.02562 * 7 6 5
38 38 H 1.09008 * 109.46821 * 185.00428 * 8 7 6
39 39 H 1.09006 * 109.47709 * 305.00138 * 8 7 6
40 40 H 0.96999 * 120.00105 * 344.99339 * 9 8 7
41 41 H 1.08996 * 109.46941 * 300.00793 * 13 10 9
42 42 H 1.09004 * 109.46615 * 60.00297 * 13 10 9
43 43 H 1.09001 * 109.47673 * 300.00734 * 14 13 10
44 44 H 1.09004 * 109.47053 * 60.00603 * 14 13 10
45 45 H 0.97005 * 119.99892 * 180.02562 * 18 17 15
46 46 H 1.09001 * 109.47194 * 299.99548 * 23 7 6
47 47 H 1.09000 * 109.46968 * 179.97438 * 23 7 6
48 48 H 1.08996 * 109.47452 * 180.02562 * 24 23 7
49 49 H 1.09001 * 109.46997 * 59.99746 * 24 23 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7213 1.2493
5 6 3.5700 -0.7219 1.2490
6 6 4.0799 -1.4426 2.4985
7 6 3.5695 -2.8849 2.4994
8 6 4.0790 -3.6070 1.2505
9 7 5.5389 -3.7126 1.3089
10 16 6.3348 -4.7559 0.2988
11 8 7.7036 -4.6092 0.6510
12 8 5.6619 -5.9952 0.4742
13 6 6.0310 -4.0966 -1.3637
14 6 6.7242 -4.9844 -2.3990
15 6 6.4713 -4.4370 -3.7801
16 1 5.8760 -3.5449 -3.9067
17 6 6.9999 -5.0752 -4.8821
18 7 7.7243 -6.1619 -4.7280
19 14 6.6870 -4.3963 -6.5940
20 1 7.7593 -3.4319 -6.9478
21 1 6.6804 -5.5110 -7.5751
22 1 5.3723 -3.7062 -6.6201
23 6 2.0395 -2.8843 2.4996
24 6 1.5295 -2.1636 1.2502
25 1 -0.3634 0.5138 0.8900
26 1 -0.3633 0.5138 -0.8901
27 1 -0.3633 -1.0277 -0.0005
28 1 1.8934 -0.5138 -0.8900
29 1 3.1300 1.4425 0.0005
30 1 1.6767 1.9563 -0.8900
31 1 1.6767 1.9563 0.8900
32 1 1.6767 -0.2074 2.1393
33 1 3.9330 -1.2359 0.3590
34 1 3.9337 0.3057 1.2488
35 1 3.7170 -0.9281 3.3883
36 1 5.1700 -1.4426 2.4985
37 1 3.9324 -3.3982 3.3898
38 1 3.6439 -4.6054 1.2052
39 1 3.7906 -3.0444 0.3624
40 1 6.0395 -3.1714 1.9393
41 1 4.9585 -4.0806 -1.5578
42 1 6.4274 -3.0834 -1.4307
43 1 7.7966 -5.0000 -2.2047
44 1 6.3281 -5.9978 -2.3322
45 1 8.0965 -6.6107 -5.5033
46 1 1.6764 -2.3699 3.3894
47 1 1.6757 -3.9119 2.4998
48 1 0.4395 -2.1628 1.2506
49 1 1.8925 -2.6780 0.3604
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000126143970.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:29:41
Heat of formation + Delta-G solvation = -124.409684 kcal
Electronic energy + Delta-G solvation = -25898.234761 eV
Core-core repulsion = 22371.364184 eV
Total energy + Delta-G solvation = -3526.870578 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 317.181 amu
Computer time = 2.13 seconds
Orbital eigenvalues (eV)
-39.96529 -36.61922 -36.31306 -35.39505 -33.87915 -33.70128 -31.14950 -31.12886
-29.69368 -27.36738 -25.60900 -25.56374 -22.89317 -22.55636 -21.62967 -20.04094
-19.14247 -18.84602 -17.38963 -16.49336 -16.33847 -15.95539 -15.38568 -14.97922
-14.72563 -14.58350 -14.54610 -14.13044 -13.69147 -13.56286 -13.44980 -13.17474
-12.92409 -12.52547 -12.48089 -12.44504 -11.99004 -11.79873 -11.74011 -11.55900
-11.47249 -11.30484 -11.26941 -11.21514 -11.15041 -11.07725 -10.94821 -10.77277
-10.45685 -10.39285 -10.36899 -10.07270 -10.01043 -9.74722 -9.39962 -8.96114
-8.49590 -6.11721 -4.17152 0.83868 3.20637 3.26290 3.32547 3.35140
4.26832 4.33966 4.38739 4.44664 4.53655 4.68018 4.75234 4.84934
4.90300 5.01478 5.14935 5.22142 5.23555 5.32389 5.34939 5.37154
5.39762 5.45120 5.47631 5.47750 5.64586 5.68048 5.71997 5.72850
5.75221 5.81892 5.83325 5.90511 5.95215 6.00553 6.05976 6.09031
6.17086 6.21618 6.30168 6.38394 6.50471 7.15603 7.31465 7.37861
7.81247 8.18578 8.86203 9.47497 10.99356
Molecular weight = 317.18amu
Principal moments of inertia in cm(-1)
A = 0.011074 B = 0.003914 C = 0.003125
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2527.757595 B = 7152.869254 C = 8957.096907
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.095 4.095
3 C -0.149 4.149
4 C -0.079 4.079
5 C -0.123 4.123
6 C -0.114 4.114
7 C -0.093 4.093
8 C 0.115 3.885
9 N -1.127 6.127
10 S 2.593 3.407
11 O -0.970 6.970
12 O -0.968 6.968
13 C -0.589 4.589
14 C 0.028 3.972
15 C -0.519 4.519
16 H 0.061 0.939
17 C 0.058 3.942
18 N -0.890 5.890
19 Si 0.899 3.101
20 H -0.279 1.279
21 H -0.284 1.284
22 H -0.273 1.273
23 C -0.112 4.112
24 C -0.123 4.123
25 H 0.051 0.949
26 H 0.051 0.949
27 H 0.058 0.942
28 H 0.072 0.928
29 H 0.058 0.942
30 H 0.051 0.949
31 H 0.051 0.949
32 H 0.067 0.933
33 H 0.070 0.930
34 H 0.064 0.936
35 H 0.062 0.938
36 H 0.064 0.936
37 H 0.077 0.923
38 H 0.078 0.922
39 H 0.069 0.931
40 H 0.410 0.590
41 H 0.117 0.883
42 H 0.120 0.880
43 H 0.033 0.967
44 H 0.033 0.967
45 H 0.265 0.735
46 H 0.064 0.936
47 H 0.066 0.934
48 H 0.065 0.935
49 H 0.068 0.932
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.805 13.187 14.736 24.117
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.114 4.114
3 C -0.206 4.206
4 C -0.098 4.098
5 C -0.160 4.160
6 C -0.152 4.152
7 C -0.113 4.113
8 C -0.011 4.011
9 N -0.885 5.885
10 S 2.690 3.310
11 O -0.960 6.960
12 O -0.958 6.958
13 C -0.723 4.723
14 C -0.011 4.011
15 C -0.559 4.559
16 H 0.079 0.921
17 C -0.145 4.145
18 N -0.529 5.529
19 Si 0.727 3.273
20 H -0.205 1.205
21 H -0.210 1.210
22 H -0.198 1.198
23 C -0.150 4.150
24 C -0.161 4.161
25 H 0.070 0.930
26 H 0.070 0.930
27 H 0.077 0.923
28 H 0.090 0.910
29 H 0.077 0.923
30 H 0.070 0.930
31 H 0.070 0.930
32 H 0.085 0.915
33 H 0.089 0.911
34 H 0.083 0.917
35 H 0.081 0.919
36 H 0.082 0.918
37 H 0.095 0.905
38 H 0.096 0.904
39 H 0.087 0.913
40 H 0.244 0.756
41 H 0.136 0.864
42 H 0.138 0.862
43 H 0.051 0.949
44 H 0.052 0.948
45 H 0.075 0.925
46 H 0.083 0.917
47 H 0.085 0.915
48 H 0.083 0.917
49 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges -13.331 12.158 14.831 23.356
hybrid contribution -0.199 1.079 -1.109 1.560
sum -13.530 13.236 13.722 23.378
Atomic orbital electron populations
1.21893 0.95491 1.01835 1.01382 1.21170 0.95561 0.96164 0.98481
1.21894 1.01359 0.96021 1.01366 1.21185 0.95315 0.95571 0.97698
1.21737 0.95095 1.00549 0.98651 1.21557 1.00449 0.94876 0.98326
1.21309 0.95841 0.96142 0.97975 1.21475 0.79512 1.01170 0.98942
1.55786 1.15203 1.62606 1.54883 1.05507 0.73564 0.74504 0.77402
1.93548 1.33372 1.86379 1.82694 1.93535 1.75430 1.41457 1.85390
1.30436 1.10462 1.12130 1.19233 1.18958 0.95718 0.93849 0.92601
1.20998 1.33270 1.11612 0.90014 0.92080 1.25065 0.94933 0.94880
0.99584 1.69958 1.33863 1.18293 1.30738 0.86479 0.78685 0.78608
0.83567 1.20478 1.21008 1.19777 1.21530 0.94263 1.00816 0.98431
1.21741 1.00473 0.95348 0.98492 0.92990 0.92979 0.92317 0.90988
0.92269 0.92962 0.93007 0.91475 0.91141 0.91716 0.91943 0.91778
0.90458 0.90411 0.91275 0.75578 0.86415 0.86160 0.94866 0.94841
0.92543 0.91728 0.91549 0.91651 0.91339
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.08 8.84 37.16 0.33 -0.75 16
2 C -0.10 -0.75 2.51 -90.62 -0.23 -0.98 16
3 C -0.15 -1.13 8.84 37.16 0.33 -0.80 16
4 C -0.08 -0.61 1.77 -90.62 -0.16 -0.77 16
5 C -0.12 -1.02 4.58 -26.73 -0.12 -1.14 16
6 C -0.11 -0.92 5.32 -26.73 -0.14 -1.06 16
7 C -0.09 -0.81 2.77 -90.62 -0.25 -1.06 16
8 C 0.12 1.28 4.81 -4.05 -0.02 1.26 16
9 N -1.13 -14.40 5.76 -10.62 -0.06 -14.46 16
10 S 2.59 46.39 5.46 -107.50 -0.59 45.80 16
11 O -0.97 -20.27 18.08 -57.54 -1.04 -21.31 16
12 O -0.97 -20.26 17.50 -57.54 -1.01 -21.26 16
13 C -0.59 -11.21 6.01 37.15 0.22 -10.98 16
14 C 0.03 0.71 4.98 -27.89 -0.14 0.57 16
15 C -0.52 -14.34 9.11 -34.44 -0.31 -14.65 16
16 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16
17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16
18 N -0.89 -26.53 13.29 55.43 0.74 -25.80 16
19 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16
20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16
21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16
22 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16
23 C -0.11 -0.87 5.45 -26.73 -0.15 -1.01 16
24 C -0.12 -0.96 4.58 -26.73 -0.12 -1.09 16
25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16
26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16
27 H 0.06 0.42 6.43 -51.93 -0.33 0.08 16
28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16
29 H 0.06 0.46 6.43 -51.93 -0.33 0.12 16
30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16
31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16
32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16
33 H 0.07 0.66 6.32 -51.93 -0.33 0.33 16
34 H 0.06 0.51 6.43 -51.93 -0.33 0.18 16
35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16
36 H 0.06 0.52 6.90 -51.93 -0.36 0.16 16
37 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16
38 H 0.08 0.93 7.69 -51.92 -0.40 0.53 16
39 H 0.07 0.71 4.83 -51.93 -0.25 0.46 16
40 H 0.41 4.46 7.37 -34.47 -0.25 4.21 16
41 H 0.12 2.00 8.14 -51.93 -0.42 1.57 16
42 H 0.12 2.06 8.14 -51.92 -0.42 1.64 16
43 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16
44 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16
45 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16
46 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16
47 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16
48 H 0.06 0.47 6.43 -51.93 -0.33 0.14 16
49 H 0.07 0.59 6.54 -51.93 -0.34 0.25 16
LS Contribution 381.39 15.07 5.75 5.75
Total: -1.00 -34.00 381.39 -10.82 -44.82
By element:
Atomic # 1 Polarization: 9.92 SS G_CDS: -8.73 Total: 1.20 kcal
Atomic # 6 Polarization: -30.06 SS G_CDS: -0.86 Total: -30.92 kcal
Atomic # 7 Polarization: -40.93 SS G_CDS: 0.68 Total: -40.26 kcal
Atomic # 8 Polarization: -40.52 SS G_CDS: -2.05 Total: -42.57 kcal
Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal
Atomic # 16 Polarization: 46.39 SS G_CDS: -0.59 Total: 45.80 kcal
Total LS contribution 5.75 Total: 5.75 kcal
Total: -34.00 -10.82 -44.82 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000126143970.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -79.587 kcal
(2) G-P(sol) polarization free energy of solvation -34.004 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.591 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.819 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.823 kcal
(6) G-S(sol) free energy of system = (1) + (5) -124.410 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.13 seconds