Wall clock time and date at job start Tue Mar 31 2020 12:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.53006 * 109.47164 * 120.00099 * 2 1 3 5 5 C 1.52997 * 109.47164 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.46975 * 179.97438 * 5 4 2 7 7 C 1.53005 * 109.47245 * 60.00405 * 6 5 4 8 8 C 1.52993 * 109.46886 * 59.99636 * 7 6 5 9 9 N 1.46494 * 109.47268 * 65.00648 * 8 7 6 10 10 S 1.65601 * 120.00318 * 164.99950 * 9 8 7 11 11 O 1.42101 * 104.27992 * 181.07046 * 10 9 8 12 12 O 1.42104 * 104.27550 * 308.92863 * 10 9 8 13 13 C 1.81406 * 104.45168 * 64.99422 * 10 9 8 14 14 C 1.52995 * 109.47220 * 179.97438 * 13 10 9 15 15 C 1.50693 * 109.47085 * 179.97438 * 14 13 10 16 16 H 1.07999 * 120.00031 * 0.02562 * 15 14 13 17 17 C 1.37884 * 120.00306 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99645 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00425 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47619 * 89.99442 * 19 17 15 21 21 H 1.48500 * 109.47208 * 210.00020 * 19 17 15 22 22 H 1.48501 * 109.46679 * 329.99768 * 19 17 15 23 23 C 1.53000 * 109.46632 * 300.00027 * 7 6 5 24 24 C 1.52996 * 109.47518 * 59.99681 * 23 7 6 25 25 H 1.09001 * 109.47375 * 299.99867 * 1 2 3 26 26 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 27 27 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47375 * 240.00133 * 2 1 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 31 31 H 1.09001 * 109.47289 * 60.00075 * 3 2 1 32 32 H 1.09001 * 109.46998 * 299.99705 * 4 2 1 33 33 H 1.09001 * 109.47375 * 300.00034 * 5 4 2 34 34 H 1.09000 * 109.47140 * 60.00051 * 5 4 2 35 35 H 1.09001 * 109.47367 * 299.99815 * 6 5 4 36 36 H 1.09004 * 109.47108 * 180.02562 * 6 5 4 37 37 H 1.08992 * 109.47199 * 180.02562 * 7 6 5 38 38 H 1.09008 * 109.46821 * 185.00428 * 8 7 6 39 39 H 1.09006 * 109.47709 * 305.00138 * 8 7 6 40 40 H 0.96999 * 120.00105 * 344.99339 * 9 8 7 41 41 H 1.08996 * 109.46941 * 300.00793 * 13 10 9 42 42 H 1.09004 * 109.46615 * 60.00297 * 13 10 9 43 43 H 1.09001 * 109.47673 * 300.00734 * 14 13 10 44 44 H 1.09004 * 109.47053 * 60.00603 * 14 13 10 45 45 H 0.97005 * 119.99892 * 180.02562 * 18 17 15 46 46 H 1.09001 * 109.47194 * 299.99548 * 23 7 6 47 47 H 1.09000 * 109.46968 * 179.97438 * 23 7 6 48 48 H 1.08996 * 109.47452 * 180.02562 * 24 23 7 49 49 H 1.09001 * 109.46997 * 59.99746 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5700 -0.7219 1.2490 6 6 4.0799 -1.4426 2.4985 7 6 3.5695 -2.8849 2.4994 8 6 4.0790 -3.6070 1.2505 9 7 5.5389 -3.7126 1.3089 10 16 6.3348 -4.7559 0.2988 11 8 7.7036 -4.6092 0.6510 12 8 5.6619 -5.9952 0.4742 13 6 6.0310 -4.0966 -1.3637 14 6 6.7242 -4.9844 -2.3990 15 6 6.4713 -4.4370 -3.7801 16 1 5.8760 -3.5449 -3.9067 17 6 6.9999 -5.0752 -4.8821 18 7 7.7243 -6.1619 -4.7280 19 14 6.6870 -4.3963 -6.5940 20 1 7.7593 -3.4319 -6.9478 21 1 6.6804 -5.5110 -7.5751 22 1 5.3723 -3.7062 -6.6201 23 6 2.0395 -2.8843 2.4996 24 6 1.5295 -2.1636 1.2502 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 -0.2074 2.1393 33 1 3.9330 -1.2359 0.3590 34 1 3.9337 0.3057 1.2488 35 1 3.7170 -0.9281 3.3883 36 1 5.1700 -1.4426 2.4985 37 1 3.9324 -3.3982 3.3898 38 1 3.6439 -4.6054 1.2052 39 1 3.7906 -3.0444 0.3624 40 1 6.0395 -3.1714 1.9393 41 1 4.9585 -4.0806 -1.5578 42 1 6.4274 -3.0834 -1.4307 43 1 7.7966 -5.0000 -2.2047 44 1 6.3281 -5.9978 -2.3322 45 1 8.0965 -6.6107 -5.5033 46 1 1.6764 -2.3699 3.3894 47 1 1.6757 -3.9119 2.4998 48 1 0.4395 -2.1628 1.2506 49 1 1.8925 -2.6780 0.3604 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126143970.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:39 Heat of formation + Delta-G solvation = -146.576706 kcal Electronic energy + Delta-G solvation = -25899.195995 eV Core-core repulsion = 22371.364184 eV Total energy + Delta-G solvation = -3527.831812 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.63408 -38.15356 -37.17062 -36.96833 -35.88990 -34.60557 -33.12067 -31.74716 -30.40127 -27.94000 -27.58526 -26.45684 -23.68675 -23.45192 -23.15510 -20.64958 -20.29779 -19.87449 -19.06007 -18.17244 -17.33067 -17.11904 -16.78578 -16.52158 -16.10219 -15.58538 -15.30797 -15.07615 -14.85976 -14.48934 -14.34576 -14.20548 -13.96890 -13.74200 -13.63340 -13.25471 -13.18814 -13.13093 -13.05032 -12.94884 -12.93065 -12.78180 -12.43675 -12.24555 -12.15400 -12.01668 -11.91247 -11.87478 -11.83431 -11.71031 -11.44135 -11.21927 -11.06658 -10.68691 -10.64399 -10.62199 -10.19653 -8.25672 -6.39561 -0.65620 1.40858 1.42620 1.53666 1.88963 2.38179 2.81857 3.07880 3.27967 3.69199 3.80877 3.86986 4.00034 4.05061 4.13699 4.19245 4.25424 4.32697 4.53243 4.54224 4.58329 4.66668 4.71490 4.76275 4.76992 4.79163 4.85991 4.87384 5.00414 5.09209 5.10969 5.14706 5.23312 5.24725 5.27756 5.28680 5.32793 5.38470 5.43412 5.45819 5.50111 5.58636 5.67942 5.68723 5.76552 6.06631 6.17569 6.74035 7.30581 8.86693 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011074 B = 0.003914 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2527.757595 B = 7152.869254 C = 8957.096907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 C -0.148 4.148 4 C -0.074 4.074 5 C -0.125 4.125 6 C -0.113 4.113 7 C -0.088 4.088 8 C 0.104 3.896 9 N -1.105 6.105 10 S 2.620 3.380 11 O -1.001 7.001 12 O -0.999 6.999 13 C -0.587 4.587 14 C 0.020 3.980 15 C -0.538 4.538 16 H 0.075 0.925 17 C -0.003 4.003 18 N -0.935 5.935 19 Si 0.973 3.027 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.257 1.257 23 C -0.109 4.109 24 C -0.124 4.124 25 H 0.058 0.942 26 H 0.049 0.951 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.423 0.577 41 H 0.140 0.860 42 H 0.142 0.858 43 H 0.006 0.994 44 H 0.006 0.994 45 H 0.267 0.733 46 H 0.078 0.922 47 H 0.065 0.935 48 H 0.072 0.928 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.432 15.322 15.272 26.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 C -0.205 4.205 4 C -0.092 4.092 5 C -0.162 4.162 6 C -0.151 4.151 7 C -0.108 4.108 8 C -0.021 4.021 9 N -0.868 5.868 10 S 2.716 3.284 11 O -0.991 6.991 12 O -0.989 6.989 13 C -0.719 4.719 14 C -0.019 4.019 15 C -0.577 4.577 16 H 0.094 0.906 17 C -0.202 4.202 18 N -0.574 5.574 19 Si 0.797 3.203 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.181 1.181 23 C -0.147 4.147 24 C -0.162 4.162 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.260 0.740 41 H 0.158 0.842 42 H 0.160 0.840 43 H 0.024 0.976 44 H 0.025 0.975 45 H 0.076 0.924 46 H 0.097 0.903 47 H 0.084 0.916 48 H 0.091 0.909 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.957 14.309 15.372 25.783 hybrid contribution 0.268 0.433 -1.205 1.308 sum -14.689 14.742 14.167 25.175 Atomic orbital electron populations 1.21877 0.94972 1.01941 1.01657 1.21165 0.96014 0.96244 0.98056 1.21882 1.01157 0.95843 1.01647 1.21135 0.94857 0.95423 0.97780 1.21749 0.95537 1.00681 0.98239 1.21568 1.00467 0.94293 0.98756 1.21302 0.96586 0.96332 0.96589 1.21769 0.77873 1.01419 1.01042 1.55267 1.16037 1.61879 1.53614 1.04413 0.72665 0.74256 0.77042 1.93498 1.35667 1.86888 1.83066 1.93494 1.75929 1.43742 1.85751 1.30325 1.11269 1.11867 1.18465 1.18821 0.94674 0.93957 0.94448 1.21507 1.33098 1.12013 0.91046 0.90636 1.26107 0.94557 0.95083 1.04414 1.70106 1.35223 1.19952 1.32129 0.85326 0.79290 0.77968 0.77761 1.19621 1.20850 1.18135 1.21523 0.93281 1.01010 0.98930 1.21751 1.00958 0.95360 0.98083 0.92286 0.93153 0.92295 0.92405 0.92562 0.93147 0.92282 0.90697 0.92368 0.91308 0.90574 0.91793 0.90116 0.91241 0.90212 0.73976 0.84175 0.83957 0.97587 0.97519 0.92410 0.90306 0.91641 0.90934 0.92451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 8.84 71.98 0.64 -1.23 16 2 C -0.10 -1.36 2.51 -10.79 -0.03 -1.39 16 3 C -0.15 -1.98 8.84 71.98 0.64 -1.35 16 4 C -0.07 -0.96 1.77 -10.79 -0.02 -0.98 16 5 C -0.12 -1.79 4.58 30.59 0.14 -1.65 16 6 C -0.11 -1.51 5.32 30.59 0.16 -1.35 16 7 C -0.09 -1.33 2.77 -10.79 -0.03 -1.36 16 8 C 0.10 2.15 4.81 86.38 0.42 2.57 16 9 N -1.11 -26.71 5.76 -187.50 -1.08 -27.79 16 10 S 2.62 93.60 5.46 -56.49 -0.31 93.29 16 11 O -1.00 -42.14 18.08 -127.65 -2.31 -44.45 16 12 O -1.00 -42.26 17.50 -127.65 -2.23 -44.50 16 13 C -0.59 -22.12 6.01 71.98 0.43 -21.69 16 14 C 0.02 1.04 4.98 29.84 0.15 1.19 16 15 C -0.54 -29.81 9.11 25.60 0.23 -29.58 16 16 H 0.08 3.85 7.74 -2.91 -0.02 3.83 16 17 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 18 N -0.93 -57.08 13.29 21.45 0.28 -56.80 16 19 Si 0.97 43.29 29.54 68.60 2.03 45.32 16 20 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 21 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 22 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 23 C -0.11 -1.42 5.45 30.59 0.17 -1.25 16 24 C -0.12 -1.69 4.58 30.59 0.14 -1.55 16 25 H 0.06 0.66 8.14 -2.39 -0.02 0.65 16 26 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.06 0.74 6.43 -2.39 -0.02 0.72 16 28 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.06 0.78 6.43 -2.38 -0.02 0.76 16 30 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.06 0.98 6.32 -2.39 -0.02 0.96 16 34 H 0.07 0.94 6.43 -2.39 -0.02 0.92 16 35 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.06 0.86 6.90 -2.38 -0.02 0.85 16 37 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.07 1.58 7.69 -2.38 -0.02 1.56 16 39 H 0.08 1.51 4.83 -2.38 -0.01 1.49 16 40 H 0.42 8.41 7.37 -96.75 -0.71 7.69 16 41 H 0.14 4.59 8.14 -2.39 -0.02 4.57 16 42 H 0.14 4.69 8.14 -2.39 -0.02 4.67 16 43 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 44 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 45 H 0.27 15.25 8.31 -92.70 -0.77 14.48 16 46 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.07 0.89 6.43 -2.39 -0.02 0.87 16 49 H 0.06 0.91 6.54 -2.39 -0.02 0.89 16 Total: -1.00 -73.91 381.39 0.08 -73.82 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: 0.20 Total: 20.44 kcal Atomic # 6 Polarization: -62.84 SS G_CDS: 3.50 Total: -59.34 kcal Atomic # 7 Polarization: -83.79 SS G_CDS: -0.80 Total: -84.59 kcal Atomic # 8 Polarization: -84.40 SS G_CDS: -4.54 Total: -88.95 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 16 Polarization: 93.60 SS G_CDS: -0.31 Total: 93.29 kcal Total: -73.91 0.08 -73.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126143970.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.753 kcal (2) G-P(sol) polarization free energy of solvation -73.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds