Wall clock time and date at job start Tue Mar 31 2020 13:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47645 * 2 1 4 4 C 1.52997 * 109.47645 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47645 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.47531 * 179.97438 * 5 4 3 7 7 C 1.38402 * 119.82419 * 89.99853 * 6 5 4 8 8 C 1.37884 * 120.17081 * 180.02562 * 7 6 5 9 9 C 1.39850 * 119.82381 * 359.97438 * 8 7 6 10 10 C 1.47166 * 120.16746 * 179.97438 * 9 8 7 11 11 O 1.21254 * 120.00434 * 359.97438 * 10 9 8 12 12 C 1.50706 * 119.99927 * 180.02562 * 10 9 8 13 13 C 1.52997 * 109.47238 * 180.02562 * 12 10 9 14 14 C 1.50696 * 109.47055 * 179.97438 * 13 12 10 15 15 O 1.21296 * 120.00295 * 0.02562 * 14 13 12 16 16 N 1.34779 * 120.00208 * 179.97438 * 14 13 12 17 17 C 1.37095 * 120.00108 * 180.02562 * 16 14 13 18 18 H 1.08000 * 120.00390 * 359.97438 * 17 16 14 19 19 C 1.38953 * 119.99846 * 179.97438 * 17 16 14 20 20 N 1.31409 * 120.00083 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99996 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46904 * 90.00282 * 21 19 17 23 23 H 1.48498 * 109.47118 * 209.99939 * 21 19 17 24 24 H 1.48499 * 109.47134 * 330.00459 * 21 19 17 25 25 C 1.39851 * 119.65869 * 0.25300 * 9 8 7 26 26 C 1.37882 * 119.82183 * 359.51662 * 25 9 8 27 27 H 1.09003 * 109.47589 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47370 * 300.00333 * 1 2 3 29 29 H 1.09000 * 109.46806 * 59.99844 * 1 2 3 30 30 H 1.09005 * 109.47017 * 239.99310 * 2 1 3 31 31 H 1.09009 * 109.46918 * 119.99909 * 2 1 3 32 32 H 1.09008 * 109.47009 * 59.99446 * 3 2 1 33 33 H 1.09000 * 109.47146 * 299.99948 * 3 2 1 34 34 H 1.09005 * 109.47017 * 59.99310 * 4 3 2 35 35 H 1.09009 * 109.46918 * 299.99909 * 4 3 2 36 36 H 1.09008 * 109.47009 * 59.99446 * 5 4 3 37 37 H 1.09000 * 109.47146 * 299.99948 * 5 4 3 38 38 H 1.07999 * 119.91107 * 0.02562 * 7 6 5 39 39 H 1.08007 * 120.08622 * 179.97438 * 8 7 6 40 40 H 1.09001 * 109.46953 * 299.99616 * 12 10 9 41 41 H 1.09000 * 109.47318 * 59.99214 * 12 10 9 42 42 H 1.09001 * 109.46832 * 299.99686 * 13 12 10 43 43 H 1.09004 * 109.47261 * 59.99705 * 13 12 10 44 44 H 0.97006 * 119.99798 * 359.97438 * 16 14 13 45 45 H 0.96999 * 120.00175 * 179.97438 * 20 19 17 46 46 H 1.08002 * 120.08622 * 179.72514 * 25 9 8 47 47 H 1.08001 * 119.91359 * 180.21051 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0802 2.8848 0.0000 6 6 5.5872 2.8848 0.0013 7 6 6.2765 2.8838 -1.1989 8 6 7.6553 2.8832 -1.2060 9 6 8.3572 2.8842 0.0036 10 6 9.8288 2.8830 0.0048 11 8 10.4360 2.8808 -1.0448 12 6 10.5813 2.8834 1.3105 13 6 12.0858 2.8827 1.0322 14 6 12.8381 2.8837 2.3379 15 8 12.2308 2.8845 3.3879 16 7 14.1859 2.8827 2.3391 17 6 14.8704 2.8832 3.5269 18 1 14.3297 2.8847 4.4618 19 6 16.2599 2.8816 3.5281 20 7 16.9179 2.8803 2.3906 21 14 17.1926 2.8829 5.1466 22 1 17.4382 1.4831 5.5774 23 1 18.4911 3.5813 4.9691 24 1 16.3899 3.5852 6.1799 25 6 7.6533 2.8803 1.2121 26 6 6.2745 2.8857 1.2025 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5140 -0.8900 31 1 1.8933 -0.5139 0.8901 32 1 1.6767 1.9563 0.8900 33 1 1.6768 1.9563 -0.8900 34 1 3.9337 0.9283 -0.8891 35 1 3.9330 0.9287 0.8909 36 1 3.7164 3.3992 0.8895 37 1 3.7173 3.3981 -0.8904 38 1 5.7330 2.8835 -2.1321 39 1 8.1919 2.8821 -2.1434 40 1 10.3183 3.7741 1.8812 41 1 10.3167 1.9942 1.8827 42 1 12.3492 1.9922 0.4614 43 1 12.3499 3.7722 0.4603 44 1 14.6717 2.8810 1.4994 45 1 17.8879 2.8796 2.3914 46 1 8.1883 2.8765 2.1502 47 1 5.7295 2.8861 2.1349 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126893313.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:23 Heat of formation + Delta-G solvation = -94.206496 kcal Electronic energy + Delta-G solvation = -24422.257298 eV Core-core repulsion = 20761.252478 eV Total energy + Delta-G solvation = -3661.004820 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.19837 -38.77576 -37.96117 -36.53660 -34.04596 -33.67761 -32.38953 -31.24534 -31.01471 -30.48469 -27.34274 -25.87399 -24.21713 -23.19544 -22.55146 -21.48794 -21.36083 -19.65347 -18.95298 -17.83697 -17.11363 -16.34806 -15.94734 -15.57868 -15.45332 -15.30325 -14.65668 -14.41167 -14.17924 -14.12766 -13.95365 -13.84448 -13.77602 -13.62641 -13.57785 -12.72800 -12.40757 -12.31672 -12.25035 -12.18172 -11.88441 -11.58265 -11.44776 -11.37139 -11.30879 -11.09639 -11.08216 -10.97560 -10.89020 -10.66954 -10.38788 -10.20806 -9.56640 -9.50725 -9.16998 -8.90245 -8.39560 -7.96140 -6.40322 -3.81517 0.55831 1.20874 2.40811 3.18532 3.27136 3.32896 3.63584 3.92933 3.98499 4.21246 4.26382 4.43194 4.54124 4.59211 4.74130 4.79987 4.81548 5.01812 5.02774 5.11597 5.16009 5.19539 5.24057 5.26184 5.34396 5.34571 5.45937 5.48425 5.57712 5.59297 5.60995 5.64782 5.75478 5.79722 5.84165 5.89124 5.96549 5.99471 6.15039 6.28483 6.33549 6.36063 6.43022 6.45280 6.71302 7.56025 7.62387 8.06699 8.61313 9.17927 9.56090 10.06578 10.77224 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.027967 B = 0.001724 C = 0.001659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.953772 B =16239.436195 C =16876.825940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.120 4.120 4 C -0.115 4.115 5 C -0.084 4.084 6 C -0.056 4.056 7 C -0.134 4.134 8 C -0.061 4.061 9 C -0.169 4.169 10 C 0.394 3.606 11 O -0.455 6.455 12 C -0.142 4.142 13 C -0.122 4.122 14 C 0.439 3.561 15 O -0.601 6.601 16 N -0.560 5.560 17 C -0.303 4.303 18 H 0.103 0.897 19 C 0.023 3.977 20 N -0.899 5.899 21 Si 0.930 3.070 22 H -0.278 1.278 23 H -0.283 1.283 24 H -0.270 1.270 25 C -0.066 4.066 26 C -0.132 4.132 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.125 0.875 39 H 0.132 0.868 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.394 0.606 45 H 0.272 0.728 46 H 0.138 0.862 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.785 -1.954 -7.789 29.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.153 4.153 5 C -0.122 4.122 6 C -0.056 4.056 7 C -0.152 4.152 8 C -0.079 4.079 9 C -0.170 4.170 10 C 0.273 3.727 11 O -0.331 6.331 12 C -0.180 4.180 13 C -0.162 4.162 14 C 0.225 3.775 15 O -0.488 6.488 16 N -0.195 5.195 17 C -0.432 4.432 18 H 0.121 0.879 19 C -0.179 4.179 20 N -0.540 5.540 21 Si 0.757 3.243 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.194 1.194 25 C -0.084 4.084 26 C -0.150 4.150 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.143 0.857 39 H 0.150 0.850 40 H 0.122 0.878 41 H 0.122 0.878 42 H 0.100 0.900 43 H 0.100 0.900 44 H 0.227 0.773 45 H 0.082 0.918 46 H 0.156 0.844 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -28.636 -1.949 -7.676 29.711 hybrid contribution 0.865 -0.007 0.289 0.912 sum -27.771 -1.955 -7.388 28.803 Atomic orbital electron populations 1.21781 0.95936 1.01601 1.01754 1.21542 0.95803 0.96927 1.02138 1.21638 0.95153 0.96868 1.02115 1.21598 0.95197 0.95757 1.02709 1.20694 0.90637 0.97663 1.03169 1.20147 0.95807 0.96411 0.93230 1.20984 0.93895 1.02585 0.97715 1.21426 0.93988 0.94581 0.97923 1.20623 0.95338 1.06804 0.94266 1.22747 0.88046 0.70751 0.91203 1.90499 1.71070 1.36326 1.35196 1.21690 0.95159 1.05704 0.95432 1.21273 0.93622 1.03885 0.97439 1.19906 0.83150 0.84301 0.90097 1.90496 1.68093 1.56780 1.33415 1.41908 1.04502 1.63591 1.09532 1.19732 0.88905 1.47774 0.86838 0.87884 1.25283 0.96742 0.97229 0.98647 1.69619 1.08662 1.50261 1.25500 0.85856 0.78595 0.78383 0.81424 1.20396 1.20906 1.19418 1.21598 0.94256 0.94733 0.97841 1.21029 0.94063 1.02155 0.97738 0.92818 0.92772 0.92809 0.92040 0.91976 0.91922 0.91985 0.91722 0.91602 0.90718 0.90827 0.85716 0.84989 0.87752 0.87751 0.89965 0.89968 0.77256 0.91825 0.84414 0.85486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.91 37.16 0.37 -0.36 16 2 C -0.13 -0.66 5.93 -26.74 -0.16 -0.82 16 3 C -0.12 -0.62 5.21 -26.74 -0.14 -0.76 16 4 C -0.12 -0.68 5.20 -26.74 -0.14 -0.82 16 5 C -0.08 -0.53 5.34 -27.89 -0.15 -0.67 16 6 C -0.06 -0.48 5.14 -104.50 -0.54 -1.02 16 7 C -0.13 -1.24 9.68 -39.65 -0.38 -1.62 16 8 C -0.06 -0.69 9.60 -39.11 -0.38 -1.07 16 9 C -0.17 -2.12 5.87 -105.07 -0.62 -2.73 16 10 C 0.39 5.81 7.12 -30.68 -0.22 5.59 16 11 O -0.46 -7.80 15.98 5.58 0.09 -7.71 16 12 C -0.14 -2.22 3.60 -27.88 -0.10 -2.32 16 13 C -0.12 -2.26 4.99 -27.89 -0.14 -2.40 16 14 C 0.44 10.49 7.78 -10.99 -0.09 10.41 16 15 O -0.60 -16.01 15.56 5.54 0.09 -15.92 16 16 N -0.56 -14.57 5.29 -10.96 -0.06 -14.62 16 17 C -0.30 -8.56 9.68 -14.93 -0.14 -8.70 16 18 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 19 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 20 N -0.90 -24.88 13.05 55.50 0.72 -24.16 16 21 Si 0.93 21.18 29.55 -169.99 -5.02 16.15 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 C -0.07 -0.71 9.47 -39.11 -0.37 -1.08 16 26 C -0.13 -1.21 9.68 -39.65 -0.38 -1.60 16 27 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.05 0.25 8.14 -51.92 -0.42 -0.17 16 29 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.34 8.14 -51.92 -0.42 -0.09 16 32 H 0.06 0.31 8.14 -51.92 -0.42 -0.11 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 36 H 0.07 0.42 8.08 -51.92 -0.42 0.00 16 37 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 38 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.13 1.48 7.65 -52.48 -0.40 1.08 16 40 H 0.10 1.59 8.05 -51.93 -0.42 1.17 16 41 H 0.10 1.59 8.04 -51.93 -0.42 1.17 16 42 H 0.08 1.47 8.10 -51.93 -0.42 1.05 16 43 H 0.08 1.47 8.10 -51.93 -0.42 1.05 16 44 H 0.39 9.92 7.90 -40.82 -0.32 9.60 16 45 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 46 H 0.14 1.37 7.05 -52.49 -0.37 1.00 16 47 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 LS Contribution 396.36 15.07 5.97 5.97 Total: -1.00 -32.05 396.36 -9.65 -41.70 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -7.77 Total: 8.05 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: -3.67 Total: -9.46 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 0.67 Total: -38.78 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: 0.18 Total: -23.64 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.05 -9.65 -41.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126893313.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.507 kcal (2) G-P(sol) polarization free energy of solvation -32.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds