Wall clock time and date at job start Tue Mar 31 2020 13:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47645 * 2 1 4 4 C 1.52997 * 109.47645 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47645 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.47531 * 179.97438 * 5 4 3 7 7 C 1.38402 * 119.82419 * 89.99853 * 6 5 4 8 8 C 1.37884 * 120.17081 * 180.02562 * 7 6 5 9 9 C 1.39850 * 119.82381 * 359.97438 * 8 7 6 10 10 C 1.47166 * 120.16746 * 179.97438 * 9 8 7 11 11 O 1.21254 * 120.00434 * 359.97438 * 10 9 8 12 12 C 1.50706 * 119.99927 * 180.02562 * 10 9 8 13 13 C 1.52997 * 109.47238 * 180.02562 * 12 10 9 14 14 C 1.50696 * 109.47055 * 179.97438 * 13 12 10 15 15 O 1.21296 * 120.00295 * 0.02562 * 14 13 12 16 16 N 1.34779 * 120.00208 * 179.97438 * 14 13 12 17 17 C 1.37095 * 120.00108 * 180.02562 * 16 14 13 18 18 H 1.08000 * 120.00390 * 359.97438 * 17 16 14 19 19 C 1.38953 * 119.99846 * 179.97438 * 17 16 14 20 20 N 1.31409 * 120.00083 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99996 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46904 * 90.00282 * 21 19 17 23 23 H 1.48498 * 109.47118 * 209.99939 * 21 19 17 24 24 H 1.48499 * 109.47134 * 330.00459 * 21 19 17 25 25 C 1.39851 * 119.65869 * 0.25300 * 9 8 7 26 26 C 1.37882 * 119.82183 * 359.51662 * 25 9 8 27 27 H 1.09003 * 109.47589 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47370 * 300.00333 * 1 2 3 29 29 H 1.09000 * 109.46806 * 59.99844 * 1 2 3 30 30 H 1.09005 * 109.47017 * 239.99310 * 2 1 3 31 31 H 1.09009 * 109.46918 * 119.99909 * 2 1 3 32 32 H 1.09008 * 109.47009 * 59.99446 * 3 2 1 33 33 H 1.09000 * 109.47146 * 299.99948 * 3 2 1 34 34 H 1.09005 * 109.47017 * 59.99310 * 4 3 2 35 35 H 1.09009 * 109.46918 * 299.99909 * 4 3 2 36 36 H 1.09008 * 109.47009 * 59.99446 * 5 4 3 37 37 H 1.09000 * 109.47146 * 299.99948 * 5 4 3 38 38 H 1.07999 * 119.91107 * 0.02562 * 7 6 5 39 39 H 1.08007 * 120.08622 * 179.97438 * 8 7 6 40 40 H 1.09001 * 109.46953 * 299.99616 * 12 10 9 41 41 H 1.09000 * 109.47318 * 59.99214 * 12 10 9 42 42 H 1.09001 * 109.46832 * 299.99686 * 13 12 10 43 43 H 1.09004 * 109.47261 * 59.99705 * 13 12 10 44 44 H 0.97006 * 119.99798 * 359.97438 * 16 14 13 45 45 H 0.96999 * 120.00175 * 179.97438 * 20 19 17 46 46 H 1.08002 * 120.08622 * 179.72514 * 25 9 8 47 47 H 1.08001 * 119.91359 * 180.21051 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0802 2.8848 0.0000 6 6 5.5872 2.8848 0.0013 7 6 6.2765 2.8838 -1.1989 8 6 7.6553 2.8832 -1.2060 9 6 8.3572 2.8842 0.0036 10 6 9.8288 2.8830 0.0048 11 8 10.4360 2.8808 -1.0448 12 6 10.5813 2.8834 1.3105 13 6 12.0858 2.8827 1.0322 14 6 12.8381 2.8837 2.3379 15 8 12.2308 2.8845 3.3879 16 7 14.1859 2.8827 2.3391 17 6 14.8704 2.8832 3.5269 18 1 14.3297 2.8847 4.4618 19 6 16.2599 2.8816 3.5281 20 7 16.9179 2.8803 2.3906 21 14 17.1926 2.8829 5.1466 22 1 17.4382 1.4831 5.5774 23 1 18.4911 3.5813 4.9691 24 1 16.3899 3.5852 6.1799 25 6 7.6533 2.8803 1.2121 26 6 6.2745 2.8857 1.2025 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5140 -0.8900 31 1 1.8933 -0.5139 0.8901 32 1 1.6767 1.9563 0.8900 33 1 1.6768 1.9563 -0.8900 34 1 3.9337 0.9283 -0.8891 35 1 3.9330 0.9287 0.8909 36 1 3.7164 3.3992 0.8895 37 1 3.7173 3.3981 -0.8904 38 1 5.7330 2.8835 -2.1321 39 1 8.1919 2.8821 -2.1434 40 1 10.3183 3.7741 1.8812 41 1 10.3167 1.9942 1.8827 42 1 12.3492 1.9922 0.4614 43 1 12.3499 3.7722 0.4603 44 1 14.6717 2.8810 1.4994 45 1 17.8879 2.8796 2.3914 46 1 8.1883 2.8765 2.1502 47 1 5.7295 2.8861 2.1349 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126893313.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:22 Heat of formation + Delta-G solvation = -110.349811 kcal Electronic energy + Delta-G solvation = -24422.957325 eV Core-core repulsion = 20761.252478 eV Total energy + Delta-G solvation = -3661.704847 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.23105 -40.15051 -39.45142 -37.03208 -36.07194 -34.36806 -33.77871 -33.20594 -31.90779 -31.19780 -28.34720 -27.23797 -25.69576 -23.99489 -23.38430 -22.17269 -21.80366 -21.04941 -20.46635 -19.84927 -18.38076 -17.45596 -16.86584 -16.85663 -16.54787 -16.31050 -16.15900 -15.80537 -15.46640 -15.32021 -15.01383 -14.62701 -14.54387 -14.37301 -14.29846 -14.08674 -13.86916 -13.50771 -13.30680 -12.92063 -12.86819 -12.82142 -12.77743 -12.46143 -12.42183 -12.13053 -12.11481 -12.03122 -11.79171 -11.64357 -11.52568 -11.48194 -11.31717 -10.74337 -10.39728 -10.04474 -9.94793 -9.69387 -8.47917 -5.97856 -0.34715 0.43516 1.37811 1.39139 1.41622 1.55090 2.01175 2.28773 2.80708 2.81849 3.19209 3.40878 3.70756 3.77800 3.87840 4.03283 4.07748 4.09917 4.17593 4.23839 4.30537 4.36663 4.44193 4.47798 4.57339 4.60074 4.71567 4.73136 4.81199 4.91240 4.92003 4.95675 5.02345 5.07778 5.08558 5.09393 5.16091 5.27463 5.36082 5.39380 5.39743 5.44231 5.45664 5.55776 5.64817 5.95885 5.96996 6.48177 6.55073 7.08706 7.52442 8.05681 8.69589 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.027967 B = 0.001724 C = 0.001659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.953772 B =16239.436195 C =16876.825940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.128 4.128 3 C -0.116 4.116 4 C -0.112 4.112 5 C -0.081 4.081 6 C -0.048 4.048 7 C -0.134 4.134 8 C -0.071 4.071 9 C -0.192 4.192 10 C 0.404 3.596 11 O -0.487 6.487 12 C -0.137 4.137 13 C -0.111 4.111 14 C 0.439 3.561 15 O -0.629 6.629 16 N -0.572 5.572 17 C -0.338 4.338 18 H 0.084 0.916 19 C -0.014 4.014 20 N -0.921 5.921 21 Si 0.997 3.003 22 H -0.270 1.270 23 H -0.271 1.271 24 H -0.270 1.270 25 C -0.071 4.071 26 C -0.134 4.134 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.148 0.852 39 H 0.127 0.873 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.396 0.604 45 H 0.278 0.722 46 H 0.142 0.858 47 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.538 -1.824 -7.617 31.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.166 4.166 3 C -0.154 4.154 4 C -0.149 4.149 5 C -0.118 4.118 6 C -0.048 4.048 7 C -0.152 4.152 8 C -0.090 4.090 9 C -0.193 4.193 10 C 0.285 3.715 11 O -0.365 6.365 12 C -0.175 4.175 13 C -0.151 4.151 14 C 0.227 3.773 15 O -0.517 6.517 16 N -0.208 5.208 17 C -0.468 4.468 18 H 0.102 0.898 19 C -0.214 4.214 20 N -0.562 5.562 21 Si 0.820 3.180 22 H -0.195 1.195 23 H -0.196 1.196 24 H -0.195 1.195 25 C -0.089 4.089 26 C -0.152 4.152 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.165 0.835 39 H 0.145 0.855 40 H 0.127 0.873 41 H 0.127 0.873 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.229 0.771 45 H 0.088 0.912 46 H 0.159 0.841 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -30.403 -1.821 -7.519 31.372 hybrid contribution 1.288 -0.059 0.217 1.307 sum -29.115 -1.880 -7.303 30.075 Atomic orbital electron populations 1.21783 0.95592 1.01739 1.01975 1.21554 0.96138 0.97083 1.01830 1.21600 0.94458 0.96752 1.02553 1.21553 0.95739 0.95400 1.02223 1.20742 0.88677 0.98022 1.04381 1.20489 0.97239 0.94323 0.92724 1.21247 0.93074 1.01720 0.99121 1.21510 0.95044 0.95065 0.97333 1.20454 0.93791 1.09524 0.95550 1.22737 0.89186 0.69581 0.90017 1.90488 1.71854 1.38350 1.35833 1.21654 0.93202 1.06199 0.96428 1.21205 0.94878 1.04664 0.94384 1.20775 0.82667 0.82262 0.91574 1.90466 1.68535 1.57572 1.35170 1.42012 1.05308 1.64434 1.09044 1.19764 0.89842 1.50150 0.87026 0.89807 1.26128 0.96973 0.96048 1.02234 1.69692 1.09229 1.50045 1.27229 0.84874 0.77341 0.78706 0.77080 1.19542 1.19604 1.19467 1.21714 0.95155 0.94671 0.97341 1.21326 0.93470 1.01333 0.99067 0.92780 0.92592 0.92537 0.92316 0.92366 0.91520 0.91479 0.92200 0.92168 0.89579 0.89624 0.83462 0.85501 0.87324 0.87327 0.89112 0.89108 0.77082 0.91250 0.84061 0.83276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 71.98 0.71 -0.52 16 2 C -0.13 -1.15 5.93 30.59 0.18 -0.97 16 3 C -0.12 -0.93 5.21 30.59 0.16 -0.77 16 4 C -0.11 -1.06 5.20 30.59 0.16 -0.90 16 5 C -0.08 -0.76 5.34 29.85 0.16 -0.60 16 6 C -0.05 -0.70 5.14 -19.79 -0.10 -0.80 16 7 C -0.13 -2.22 9.68 22.22 0.22 -2.00 16 8 C -0.07 -1.57 9.60 22.58 0.22 -1.35 16 9 C -0.19 -4.72 5.87 -20.15 -0.12 -4.84 16 10 C 0.40 11.94 7.12 28.03 0.20 12.14 16 11 O -0.49 -16.90 15.98 -2.95 -0.05 -16.95 16 12 C -0.14 -4.29 3.60 29.85 0.11 -4.18 16 13 C -0.11 -4.15 4.99 29.85 0.15 -4.00 16 14 C 0.44 21.36 7.78 87.66 0.68 22.04 16 15 O -0.63 -34.11 15.56 -3.08 -0.05 -34.16 16 16 N -0.57 -30.44 5.29 -306.98 -1.62 -32.06 16 17 C -0.34 -19.52 9.68 84.04 0.81 -18.71 16 18 H 0.08 5.07 7.16 -2.91 -0.02 5.04 16 19 C -0.01 -0.76 5.50 84.93 0.47 -0.30 16 20 N -0.92 -50.95 13.05 21.66 0.28 -50.67 16 21 Si 1.00 43.22 29.55 68.60 2.03 45.24 16 22 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 23 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 24 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 25 C -0.07 -1.45 9.47 22.58 0.21 -1.24 16 26 C -0.13 -2.18 9.68 22.22 0.22 -1.96 16 27 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.05 0.43 8.14 -2.38 -0.02 0.41 16 29 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 31 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 32 H 0.07 0.49 8.14 -2.38 -0.02 0.48 16 33 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 35 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 36 H 0.09 0.67 8.08 -2.38 -0.02 0.65 16 37 H 0.09 0.65 8.08 -2.39 -0.02 0.63 16 38 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 39 H 0.13 2.85 7.65 -2.91 -0.02 2.83 16 40 H 0.11 3.30 8.05 -2.39 -0.02 3.28 16 41 H 0.11 3.30 8.04 -2.39 -0.02 3.28 16 42 H 0.09 3.25 8.10 -2.39 -0.02 3.23 16 43 H 0.09 3.25 8.10 -2.38 -0.02 3.23 16 44 H 0.40 20.39 7.90 -92.70 -0.73 19.66 16 45 H 0.28 14.36 8.31 -92.71 -0.77 13.59 16 46 H 0.14 2.71 7.05 -2.91 -0.02 2.69 16 47 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 Total: -1.00 -68.84 396.36 5.24 -63.60 By element: Atomic # 1 Polarization: 33.75 SS G_CDS: 0.22 Total: 33.96 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: 4.43 Total: -8.97 kcal Atomic # 7 Polarization: -81.39 SS G_CDS: -1.34 Total: -82.73 kcal Atomic # 8 Polarization: -51.01 SS G_CDS: -0.10 Total: -51.11 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Total: -68.84 5.24 -63.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126893313.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.753 kcal (2) G-P(sol) polarization free energy of solvation -68.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds