Wall clock time and date at job start Tue Mar 31 2020 13:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47594 * 2 1 4 4 C 1.53001 * 109.47300 * 120.00214 * 2 1 3 5 5 C 1.52997 * 109.46969 * 64.99455 * 4 2 1 6 6 C 1.53001 * 109.46969 * 180.02562 * 5 4 2 7 7 C 1.53045 * 109.46012 * 185.00192 * 6 5 4 8 8 C 1.53192 * 109.31029 * 178.63129 * 7 6 5 9 9 N 1.46923 * 108.77662 * 54.63529 * 8 7 6 10 10 S 1.65606 * 120.62889 * 126.36777 * 9 8 7 11 11 O 1.42094 * 104.27817 * 333.92814 * 10 9 8 12 12 O 1.42106 * 104.27580 * 206.07045 * 10 9 8 13 13 C 1.81396 * 104.45103 * 90.00030 * 10 9 8 14 14 C 1.52997 * 109.47360 * 179.97438 * 13 10 9 15 15 C 1.50701 * 109.47212 * 179.97438 * 14 13 10 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99734 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47294 * 60.00559 * 19 17 15 21 21 H 1.48503 * 109.46954 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47431 * 300.00157 * 19 17 15 23 23 C 1.46931 * 118.74107 * 306.64334 * 9 8 7 24 24 C 1.52760 * 109.00482 * 53.30564 * 23 9 8 25 25 H 1.09000 * 109.47141 * 59.99710 * 1 2 3 26 26 H 1.08994 * 109.47471 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46858 * 300.00446 * 1 2 3 28 28 H 1.08998 * 109.47197 * 239.99833 * 2 1 3 29 29 H 1.08999 * 109.47724 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47113 * 300.00307 * 3 2 1 31 31 H 1.09004 * 109.47382 * 59.99874 * 3 2 1 32 32 H 1.09004 * 109.46757 * 304.99697 * 4 2 1 33 33 H 1.09004 * 109.47190 * 185.00062 * 4 2 1 34 34 H 1.08999 * 109.46770 * 60.00698 * 5 4 2 35 35 H 1.08990 * 109.47424 * 300.00334 * 5 4 2 36 36 H 1.09002 * 109.46167 * 304.97949 * 6 5 4 37 37 H 1.08998 * 109.49463 * 58.67932 * 7 6 5 38 38 H 1.09001 * 109.49708 * 298.58348 * 7 6 5 39 39 H 1.09004 * 109.58820 * 294.84560 * 8 7 6 40 40 H 1.08997 * 109.70082 * 174.49376 * 8 7 6 41 41 H 1.09002 * 109.47134 * 59.99751 * 13 10 9 42 42 H 1.08998 * 109.46953 * 300.00489 * 13 10 9 43 43 H 1.09002 * 109.47153 * 59.99820 * 14 13 10 44 44 H 1.09001 * 109.46832 * 300.00011 * 14 13 10 45 45 H 0.97002 * 119.99768 * 179.97438 * 18 17 15 46 46 H 1.08996 * 109.58620 * 173.14734 * 23 9 8 47 47 H 1.09000 * 109.58287 * 293.56713 * 23 9 8 48 48 H 1.09000 * 109.55779 * 185.55242 * 24 23 9 49 49 H 1.09003 * 109.35959 * 65.50545 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6351 -2.1955 1.1879 6 6 2.1446 -2.9166 2.4374 7 6 1.8492 -4.4135 2.3183 8 6 2.3911 -5.1369 3.5552 9 7 1.8293 -4.5047 4.7566 10 16 1.0433 -5.4114 5.8979 11 8 0.5555 -6.5351 5.1778 12 8 0.1515 -4.4961 6.5194 13 6 2.3476 -5.9137 7.0541 14 6 1.7400 -6.7670 8.1692 15 6 2.8237 -7.1848 9.1294 16 1 3.8438 -6.8726 8.9614 17 6 2.5127 -7.9648 10.2230 18 7 1.2704 -8.3446 10.4278 19 14 3.8560 -8.4821 11.4135 20 1 4.4875 -7.2740 12.0026 21 1 3.2662 -9.3104 12.4958 22 1 4.8823 -9.2736 10.6885 23 6 1.9728 -3.0520 4.9234 24 6 1.4406 -2.3529 3.6738 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 3.1301 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9564 0.8900 32 1 1.6054 -0.2617 2.1370 33 1 3.1264 -0.6444 1.2951 34 1 2.0698 -2.6549 0.3002 35 1 0.5489 -2.2723 1.1420 36 1 3.2200 -2.7649 2.5312 37 1 2.3318 -4.8095 1.4247 38 1 0.7724 -4.5675 2.2493 39 1 3.4782 -5.0603 3.5763 40 1 2.0993 -6.1866 3.5242 41 1 2.8107 -5.0270 7.4870 42 1 3.1013 -6.4939 6.5218 43 1 1.2766 -7.6538 7.7366 44 1 0.9865 -6.1863 8.7014 45 1 1.0517 -8.8937 11.1970 46 1 1.4032 -2.7260 5.7935 47 1 3.0251 -2.8019 5.0584 48 1 1.6322 -1.2822 3.7451 49 1 0.3675 -2.5262 3.5921 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131620869.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:32 Heat of formation + Delta-G solvation = -118.653116 kcal Electronic energy + Delta-G solvation = -25262.666115 eV Core-core repulsion = 21736.045161 eV Total energy + Delta-G solvation = -3526.620954 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.13321 -36.95943 -36.63475 -35.40047 -33.87613 -33.67492 -31.15108 -31.14126 -29.37554 -27.48342 -25.60879 -25.06635 -23.42076 -22.05459 -21.48335 -20.24986 -20.13787 -18.39816 -17.54498 -16.52085 -15.86408 -15.72864 -15.40056 -14.79514 -14.63461 -14.54250 -14.52308 -14.42239 -14.14242 -13.50289 -13.34865 -13.30518 -12.89710 -12.52374 -12.49754 -12.40321 -11.98251 -11.79712 -11.74337 -11.61442 -11.57516 -11.48998 -11.19036 -11.13975 -11.08945 -11.06048 -10.95641 -10.76282 -10.65293 -10.41982 -10.36395 -10.32917 -10.20151 -9.74191 -9.31286 -8.71520 -8.49586 -6.11712 -4.17341 0.78899 3.06555 3.27431 3.32143 3.34050 4.30140 4.35305 4.40654 4.52241 4.55528 4.60855 4.67591 4.73247 4.85824 5.08500 5.11766 5.17581 5.23188 5.28363 5.31778 5.33391 5.42816 5.45956 5.46758 5.52668 5.59668 5.63931 5.65506 5.67305 5.77364 5.78070 5.79329 5.86564 5.88015 5.91694 6.00077 6.03100 6.10910 6.17783 6.28508 6.36357 6.50885 6.75363 7.30839 7.37142 7.81030 8.18482 8.85787 9.47183 10.99257 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.032506 B = 0.002416 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.161383 B =11584.526513 C =11750.961184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.098 4.098 3 C -0.148 4.148 4 C -0.117 4.117 5 C -0.116 4.116 6 C -0.086 4.086 7 C -0.126 4.126 8 C 0.118 3.882 9 N -1.006 6.006 10 S 2.591 3.409 11 O -0.965 6.965 12 O -0.965 6.965 13 C -0.589 4.589 14 C 0.028 3.972 15 C -0.520 4.520 16 H 0.061 0.939 17 C 0.057 3.943 18 N -0.890 5.890 19 Si 0.901 3.099 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.275 1.275 23 C 0.117 3.883 24 C -0.127 4.127 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.093 0.907 41 H 0.118 0.882 42 H 0.118 0.882 43 H 0.033 0.967 44 H 0.033 0.967 45 H 0.266 0.734 46 H 0.093 0.907 47 H 0.064 0.936 48 H 0.073 0.927 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.209 16.005 -20.860 26.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.117 4.117 3 C -0.205 4.205 4 C -0.154 4.154 5 C -0.153 4.153 6 C -0.104 4.104 7 C -0.165 4.165 8 C -0.008 4.008 9 N -0.843 5.843 10 S 2.690 3.310 11 O -0.955 6.955 12 O -0.956 6.956 13 C -0.723 4.723 14 C -0.011 4.011 15 C -0.560 4.560 16 H 0.079 0.921 17 C -0.145 4.145 18 N -0.528 5.528 19 Si 0.728 3.272 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.201 1.201 23 C -0.008 4.008 24 C -0.166 4.166 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.112 0.888 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.051 0.949 44 H 0.051 0.949 45 H 0.075 0.925 46 H 0.112 0.888 47 H 0.082 0.918 48 H 0.092 0.908 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.141 15.733 -20.761 26.137 hybrid contribution 1.388 -0.291 0.853 1.655 sum 3.529 15.442 -19.908 25.441 Atomic orbital electron populations 1.21896 0.95319 1.01942 1.01534 1.21132 0.95924 0.96033 0.98574 1.21847 1.00838 0.96202 1.01636 1.21716 1.00679 0.95286 0.97711 1.21697 1.01324 0.94870 0.97444 1.21132 1.00125 0.94629 0.94534 1.21908 1.02028 0.95038 0.97510 1.21388 0.97767 0.97645 0.83959 1.57930 1.75450 1.16493 1.34396 1.05658 0.76892 0.73694 0.74791 1.93521 1.78526 1.52751 1.70751 1.93523 1.61545 1.63148 1.77336 1.30496 1.16666 1.10770 1.14342 1.18957 0.97172 0.94021 0.90943 1.20968 0.94019 1.32649 1.08357 0.92124 1.25077 0.95749 0.95828 0.97891 1.69946 1.17643 1.36086 1.29172 0.86521 0.81621 0.78660 0.80400 1.20083 1.21074 1.20088 1.21313 1.01149 0.79211 0.99132 1.21890 1.00849 0.99545 0.94308 0.93096 0.92352 0.92689 0.91490 0.92824 0.92946 0.92711 0.91595 0.92117 0.92121 0.91694 0.91098 0.91060 0.91406 0.91744 0.88826 0.86346 0.86347 0.94903 0.94901 0.92477 0.88840 0.91784 0.90804 0.91444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 8.95 37.16 0.33 -0.66 16 2 C -0.10 -0.64 2.92 -90.62 -0.26 -0.90 16 3 C -0.15 -0.89 9.19 37.16 0.34 -0.55 16 4 C -0.12 -0.80 4.44 -26.73 -0.12 -0.91 16 5 C -0.12 -0.87 4.44 -26.73 -0.12 -0.99 16 6 C -0.09 -0.74 2.15 -90.58 -0.19 -0.94 16 7 C -0.13 -1.24 5.36 -26.61 -0.14 -1.38 16 8 C 0.12 1.37 6.43 -3.71 -0.02 1.34 16 9 N -1.01 -13.79 3.23 -113.77 -0.37 -14.16 16 10 S 2.59 47.40 5.45 -107.50 -0.59 46.81 16 11 O -0.97 -20.16 16.59 -57.54 -0.95 -21.11 16 12 O -0.97 -20.17 16.58 -57.54 -0.95 -21.12 16 13 C -0.59 -11.46 6.12 37.16 0.23 -11.24 16 14 C 0.03 0.73 4.98 -27.88 -0.14 0.59 16 15 C -0.52 -14.51 9.11 -34.44 -0.31 -14.82 16 16 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -26.64 13.29 55.43 0.74 -25.91 16 19 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 C 0.12 1.36 6.40 -3.93 -0.03 1.34 16 24 C -0.13 -1.25 5.13 -26.83 -0.14 -1.39 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.40 6.57 -51.93 -0.34 0.06 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.47 6.53 -51.93 -0.34 0.13 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.52 6.56 -51.93 -0.34 0.18 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.09 1.17 6.86 -51.93 -0.36 0.82 16 41 H 0.12 2.08 8.14 -51.92 -0.42 1.66 16 42 H 0.12 2.08 8.14 -51.93 -0.42 1.66 16 43 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 46 H 0.09 1.18 6.85 -51.93 -0.36 0.82 16 47 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 48 H 0.07 0.60 6.50 -51.93 -0.34 0.27 16 49 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 389.56 15.07 5.87 5.87 Total: -1.00 -33.63 389.56 -11.17 -44.80 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -9.22 Total: -2.49 kcal Atomic # 6 Polarization: -28.30 SS G_CDS: -0.67 Total: -28.98 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: 0.37 Total: -40.07 kcal Atomic # 8 Polarization: -40.33 SS G_CDS: -1.91 Total: -42.23 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 47.40 SS G_CDS: -0.59 Total: 46.81 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.63 -11.17 -44.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131620869.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.853 kcal (2) G-P(sol) polarization free energy of solvation -33.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds