Wall clock time and date at job start Tue Mar 31 2020 13:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47594 * 2 1 4 4 C 1.53001 * 109.47300 * 120.00214 * 2 1 3 5 5 C 1.52997 * 109.46969 * 64.99455 * 4 2 1 6 6 C 1.53001 * 109.46969 * 180.02562 * 5 4 2 7 7 C 1.53045 * 109.46012 * 185.00192 * 6 5 4 8 8 C 1.53192 * 109.31029 * 178.63129 * 7 6 5 9 9 N 1.46923 * 108.77662 * 54.63529 * 8 7 6 10 10 S 1.65606 * 120.62889 * 126.36777 * 9 8 7 11 11 O 1.42094 * 104.27817 * 333.92814 * 10 9 8 12 12 O 1.42106 * 104.27580 * 206.07045 * 10 9 8 13 13 C 1.81396 * 104.45103 * 90.00030 * 10 9 8 14 14 C 1.52997 * 109.47360 * 179.97438 * 13 10 9 15 15 C 1.50701 * 109.47212 * 179.97438 * 14 13 10 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99734 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47294 * 60.00559 * 19 17 15 21 21 H 1.48503 * 109.46954 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47431 * 300.00157 * 19 17 15 23 23 C 1.46931 * 118.74107 * 306.64334 * 9 8 7 24 24 C 1.52760 * 109.00482 * 53.30564 * 23 9 8 25 25 H 1.09000 * 109.47141 * 59.99710 * 1 2 3 26 26 H 1.08994 * 109.47471 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46858 * 300.00446 * 1 2 3 28 28 H 1.08998 * 109.47197 * 239.99833 * 2 1 3 29 29 H 1.08999 * 109.47724 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47113 * 300.00307 * 3 2 1 31 31 H 1.09004 * 109.47382 * 59.99874 * 3 2 1 32 32 H 1.09004 * 109.46757 * 304.99697 * 4 2 1 33 33 H 1.09004 * 109.47190 * 185.00062 * 4 2 1 34 34 H 1.08999 * 109.46770 * 60.00698 * 5 4 2 35 35 H 1.08990 * 109.47424 * 300.00334 * 5 4 2 36 36 H 1.09002 * 109.46167 * 304.97949 * 6 5 4 37 37 H 1.08998 * 109.49463 * 58.67932 * 7 6 5 38 38 H 1.09001 * 109.49708 * 298.58348 * 7 6 5 39 39 H 1.09004 * 109.58820 * 294.84560 * 8 7 6 40 40 H 1.08997 * 109.70082 * 174.49376 * 8 7 6 41 41 H 1.09002 * 109.47134 * 59.99751 * 13 10 9 42 42 H 1.08998 * 109.46953 * 300.00489 * 13 10 9 43 43 H 1.09002 * 109.47153 * 59.99820 * 14 13 10 44 44 H 1.09001 * 109.46832 * 300.00011 * 14 13 10 45 45 H 0.97002 * 119.99768 * 179.97438 * 18 17 15 46 46 H 1.08996 * 109.58620 * 173.14734 * 23 9 8 47 47 H 1.09000 * 109.58287 * 293.56713 * 23 9 8 48 48 H 1.09000 * 109.55779 * 185.55242 * 24 23 9 49 49 H 1.09003 * 109.35959 * 65.50545 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6351 -2.1955 1.1879 6 6 2.1446 -2.9166 2.4374 7 6 1.8492 -4.4135 2.3183 8 6 2.3911 -5.1369 3.5552 9 7 1.8293 -4.5047 4.7566 10 16 1.0433 -5.4114 5.8979 11 8 0.5555 -6.5351 5.1778 12 8 0.1515 -4.4961 6.5194 13 6 2.3476 -5.9137 7.0541 14 6 1.7400 -6.7670 8.1692 15 6 2.8237 -7.1848 9.1294 16 1 3.8438 -6.8726 8.9614 17 6 2.5127 -7.9648 10.2230 18 7 1.2704 -8.3446 10.4278 19 14 3.8560 -8.4821 11.4135 20 1 4.4875 -7.2740 12.0026 21 1 3.2662 -9.3104 12.4958 22 1 4.8823 -9.2736 10.6885 23 6 1.9728 -3.0520 4.9234 24 6 1.4406 -2.3529 3.6738 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 3.1301 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9564 0.8900 32 1 1.6054 -0.2617 2.1370 33 1 3.1264 -0.6444 1.2951 34 1 2.0698 -2.6549 0.3002 35 1 0.5489 -2.2723 1.1420 36 1 3.2200 -2.7649 2.5312 37 1 2.3318 -4.8095 1.4247 38 1 0.7724 -4.5675 2.2493 39 1 3.4782 -5.0603 3.5763 40 1 2.0993 -6.1866 3.5242 41 1 2.8107 -5.0270 7.4870 42 1 3.1013 -6.4939 6.5218 43 1 1.2766 -7.6538 7.7366 44 1 0.9865 -6.1863 8.7014 45 1 1.0517 -8.8937 11.1970 46 1 1.4032 -2.7260 5.7935 47 1 3.0251 -2.8019 5.0584 48 1 1.6322 -1.2822 3.7451 49 1 0.3675 -2.5262 3.5921 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131620869.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:31 Heat of formation + Delta-G solvation = -139.219074 kcal Electronic energy + Delta-G solvation = -25263.557922 eV Core-core repulsion = 21736.045161 eV Total energy + Delta-G solvation = -3527.512761 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.93010 -38.22814 -37.59967 -36.99181 -35.90191 -34.47912 -33.13066 -32.01429 -30.08871 -27.97403 -27.59143 -25.85263 -24.28937 -23.55951 -22.68485 -21.08729 -20.66811 -19.72238 -19.04156 -18.35172 -17.21646 -17.06234 -16.54996 -16.23664 -15.79525 -15.46505 -15.28003 -15.17227 -15.06151 -14.91800 -14.49482 -14.26021 -14.14255 -13.73573 -13.56707 -13.35786 -13.19507 -13.03191 -12.91876 -12.91249 -12.85007 -12.79863 -12.54267 -12.24636 -12.17144 -12.14199 -12.06656 -11.89588 -11.77880 -11.68646 -11.39827 -11.24686 -11.12955 -11.02788 -10.91896 -10.65096 -9.84748 -8.26763 -6.41366 -0.70252 1.40072 1.43937 1.52140 1.77060 2.37508 2.86623 3.06095 3.18540 3.66391 3.75097 3.88705 4.01330 4.07912 4.09350 4.14766 4.22382 4.29398 4.35509 4.47748 4.59744 4.62136 4.74162 4.76622 4.82091 4.83514 4.85356 4.88475 4.95787 4.97629 5.02688 5.06762 5.15203 5.20243 5.23826 5.25347 5.25883 5.30532 5.33010 5.41900 5.45474 5.51881 5.63535 5.66869 5.68551 5.76349 6.04927 6.71967 7.28750 8.85260 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.032506 B = 0.002416 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.161383 B =11584.526513 C =11750.961184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.098 4.098 3 C -0.147 4.147 4 C -0.113 4.113 5 C -0.111 4.111 6 C -0.080 4.080 7 C -0.125 4.125 8 C 0.108 3.892 9 N -0.996 5.996 10 S 2.611 3.389 11 O -0.996 6.996 12 O -0.996 6.996 13 C -0.587 4.587 14 C 0.021 3.979 15 C -0.540 4.540 16 H 0.076 0.924 17 C -0.006 4.006 18 N -0.934 5.934 19 Si 0.976 3.024 20 H -0.262 1.262 21 H -0.284 1.284 22 H -0.262 1.262 23 C 0.108 3.892 24 C -0.126 4.126 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.055 0.945 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.048 0.952 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.140 0.860 42 H 0.140 0.860 43 H 0.005 0.995 44 H 0.004 0.996 45 H 0.268 0.732 46 H 0.079 0.921 47 H 0.095 0.905 48 H 0.095 0.905 49 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.056 17.287 -22.027 28.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.116 4.116 3 C -0.204 4.204 4 C -0.150 4.150 5 C -0.149 4.149 6 C -0.099 4.099 7 C -0.164 4.164 8 C -0.017 4.017 9 N -0.835 5.835 10 S 2.710 3.290 11 O -0.986 6.986 12 O -0.986 6.986 13 C -0.719 4.719 14 C -0.018 4.018 15 C -0.579 4.579 16 H 0.094 0.906 17 C -0.204 4.204 18 N -0.574 5.574 19 Si 0.800 3.200 20 H -0.187 1.187 21 H -0.210 1.210 22 H -0.187 1.187 23 C -0.017 4.017 24 C -0.165 4.165 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.106 0.894 37 H 0.113 0.887 38 H 0.067 0.933 39 H 0.113 0.887 40 H 0.098 0.902 41 H 0.158 0.842 42 H 0.158 0.842 43 H 0.023 0.977 44 H 0.023 0.977 45 H 0.076 0.924 46 H 0.097 0.903 47 H 0.113 0.887 48 H 0.113 0.887 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.996 17.017 -21.930 28.204 hybrid contribution 0.469 -0.635 1.122 1.372 sum 5.465 16.383 -20.807 27.041 Atomic orbital electron populations 1.21899 0.95696 1.01636 1.01509 1.21128 0.95590 0.96359 0.98542 1.21838 1.01093 0.95838 1.01675 1.21682 1.01040 0.94662 0.97655 1.21642 1.00764 0.95310 0.97157 1.21119 1.00886 0.93602 0.94286 1.21935 1.01009 0.95986 0.97493 1.21706 0.99509 0.97038 0.83413 1.57564 1.75222 1.17128 1.33621 1.04708 0.76520 0.73092 0.74704 1.93474 1.79325 1.54502 1.71305 1.93476 1.62921 1.63795 1.78444 1.30391 1.17529 1.10870 1.13083 1.18815 0.96643 0.93693 0.92676 1.21484 0.95057 1.32529 1.08821 0.90597 1.26164 0.98314 0.95839 1.00121 1.70102 1.20160 1.37056 1.30066 0.85332 0.78383 0.78649 0.77684 1.18700 1.20960 1.18705 1.21623 1.02958 0.77531 0.99574 1.21910 0.99756 1.00683 0.94114 0.92757 0.92802 0.93110 0.91303 0.92394 0.92701 0.92932 0.91951 0.91407 0.91311 0.92657 0.89439 0.88736 0.93331 0.88658 0.90201 0.84182 0.84164 0.97715 0.97723 0.92373 0.90258 0.88711 0.88715 0.93403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 8.95 71.98 0.64 -1.17 16 2 C -0.10 -1.08 2.92 -10.80 -0.03 -1.11 16 3 C -0.15 -1.49 9.19 71.98 0.66 -0.83 16 4 C -0.11 -1.26 4.44 30.59 0.14 -1.13 16 5 C -0.11 -1.40 4.44 30.59 0.14 -1.27 16 6 C -0.08 -1.17 2.15 -10.77 -0.02 -1.19 16 7 C -0.13 -2.20 5.36 30.67 0.16 -2.04 16 8 C 0.11 2.27 6.43 86.36 0.56 2.83 16 9 N -1.00 -26.02 3.23 -513.85 -1.66 -27.67 16 10 S 2.61 96.93 5.45 -56.49 -0.31 96.63 16 11 O -1.00 -42.81 16.59 -127.65 -2.12 -44.93 16 12 O -1.00 -42.88 16.58 -127.65 -2.12 -45.00 16 13 C -0.59 -22.69 6.12 71.98 0.44 -22.25 16 14 C 0.02 1.10 4.98 29.85 0.15 1.25 16 15 C -0.54 -30.28 9.11 25.60 0.23 -30.05 16 16 H 0.08 3.91 7.74 -2.91 -0.02 3.88 16 17 C -0.01 -0.34 5.46 84.66 0.46 0.12 16 18 N -0.93 -57.48 13.29 21.45 0.28 -57.20 16 19 Si 0.98 43.49 29.54 68.60 2.03 45.52 16 20 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 21 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 22 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 23 C 0.11 2.29 6.40 86.22 0.55 2.84 16 24 C -0.13 -2.23 5.13 30.53 0.16 -2.08 16 25 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.05 0.69 6.57 -2.39 -0.02 0.67 16 27 H 0.05 0.64 8.14 -2.39 -0.02 0.63 16 28 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.06 0.75 6.53 -2.39 -0.02 0.73 16 33 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.05 0.81 6.56 -2.39 -0.02 0.80 16 36 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 40 H 0.08 1.93 6.86 -2.39 -0.02 1.91 16 41 H 0.14 4.74 8.14 -2.39 -0.02 4.72 16 42 H 0.14 4.74 8.14 -2.39 -0.02 4.72 16 43 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 44 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 45 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 46 H 0.08 1.93 6.85 -2.39 -0.02 1.91 16 47 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 48 H 0.09 1.30 6.50 -2.39 -0.02 1.29 16 49 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -74.61 389.56 1.23 -73.38 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: 0.88 Total: 15.36 kcal Atomic # 6 Polarization: -60.31 SS G_CDS: 4.24 Total: -56.07 kcal Atomic # 7 Polarization: -83.50 SS G_CDS: -1.37 Total: -84.87 kcal Atomic # 8 Polarization: -85.70 SS G_CDS: -4.23 Total: -89.93 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 16 Polarization: 96.93 SS G_CDS: -0.31 Total: 96.63 kcal Total: -74.61 1.23 -73.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131620869.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.843 kcal (2) G-P(sol) polarization free energy of solvation -74.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds