Wall clock time and date at job start Tue Mar 31 2020 13:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46877 * 2 1 4 4 C 1.52998 * 109.46982 * 239.99936 * 2 1 3 5 5 C 1.52999 * 109.46972 * 184.99637 * 4 2 1 6 6 C 1.53001 * 109.47172 * 174.72044 * 5 4 2 7 7 H 1.09001 * 109.87634 * 304.10996 * 6 5 4 8 8 C 1.54319 * 109.88443 * 65.28541 * 6 5 4 9 9 C 1.55158 * 102.94366 * 141.61001 * 8 6 5 10 10 C 1.54908 * 101.58158 * 324.49972 * 9 8 6 11 11 N 1.47020 * 109.88429 * 183.09738 * 6 5 4 12 12 S 1.65600 * 125.65057 * 61.60179 * 11 6 5 13 13 O 1.42095 * 104.27828 * 212.18609 * 12 11 6 14 14 O 1.42098 * 104.27821 * 340.04426 * 12 11 6 15 15 C 1.81407 * 104.44621 * 96.11685 * 12 11 6 16 16 C 1.52998 * 109.46662 * 180.02562 * 15 12 11 17 17 C 1.53001 * 109.46912 * 179.97438 * 16 15 12 18 18 C 1.50697 * 109.47524 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99641 * 0.02562 * 18 17 16 20 20 C 1.37879 * 120.00287 * 179.97438 * 18 17 16 21 21 N 1.31510 * 119.99954 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99694 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46809 * 90.00421 * 22 20 18 24 24 H 1.48501 * 109.46855 * 210.00086 * 22 20 18 25 25 H 1.48492 * 109.47317 * 330.00072 * 22 20 18 26 26 H 1.08999 * 109.47308 * 60.00371 * 1 2 3 27 27 H 1.09003 * 109.46924 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47243 * 299.99785 * 1 2 3 29 29 H 1.09002 * 109.47048 * 120.00083 * 2 1 3 30 30 H 1.08999 * 109.46849 * 299.99910 * 3 2 1 31 31 H 1.08997 * 109.47008 * 60.00071 * 3 2 1 32 32 H 1.09002 * 109.46585 * 180.02562 * 3 2 1 33 33 H 1.08995 * 109.47262 * 304.99722 * 4 2 1 34 34 H 1.09003 * 109.47293 * 64.99809 * 4 2 1 35 35 H 1.08993 * 109.47506 * 294.72468 * 5 4 2 36 36 H 1.09003 * 109.47179 * 54.72541 * 5 4 2 37 37 H 1.08997 * 110.72236 * 259.97837 * 8 6 5 38 38 H 1.09003 * 110.71610 * 23.24581 * 8 6 5 39 39 H 1.09003 * 111.00089 * 206.42228 * 9 8 6 40 40 H 1.08996 * 111.03691 * 82.58912 * 9 8 6 41 41 H 1.09003 * 110.36767 * 278.16921 * 10 9 8 42 42 H 1.08997 * 110.36203 * 155.84677 * 10 9 8 43 43 H 1.08997 * 109.46833 * 299.99730 * 15 12 11 44 44 H 1.08997 * 109.47248 * 59.99973 * 15 12 11 45 45 H 1.09001 * 109.47685 * 299.99629 * 16 15 12 46 46 H 1.08999 * 109.47462 * 60.00528 * 16 15 12 47 47 H 1.09004 * 109.47422 * 300.00338 * 17 16 15 48 48 H 1.08997 * 109.47076 * 59.99903 * 17 16 15 49 49 H 0.97006 * 119.99744 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.8310 -1.1880 6 6 4.0640 -1.6658 -2.3691 7 1 3.5740 -2.6395 -2.3680 8 6 3.7717 -0.9291 -3.6932 9 6 5.0337 -1.2300 -4.5442 10 6 6.1449 -1.2256 -3.4649 11 7 5.5211 -1.8393 -2.2784 12 16 6.3281 -2.5975 -1.0471 13 8 7.5667 -1.9064 -0.9619 14 8 5.4069 -2.5862 0.0349 15 6 6.5835 -4.2900 -1.6481 16 6 7.3283 -5.1012 -0.5860 17 6 7.5432 -6.5288 -1.0926 18 6 8.2763 -7.3282 -0.0463 19 1 8.5601 -6.8644 0.8869 20 6 8.5837 -8.6518 -0.2799 21 7 8.2377 -9.2166 -1.4160 22 14 9.4918 -9.6427 1.0175 23 1 8.5093 -10.2888 1.9244 24 1 10.3159 -10.6862 0.3563 25 1 10.3720 -8.7409 1.8030 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6055 -1.7198 -1.2951 34 1 1.7516 -0.1584 -2.1370 35 1 4.0031 0.1658 -1.2366 36 1 3.8574 -1.3113 -0.2543 37 1 2.8792 -1.3334 -4.1706 38 1 3.6676 0.1426 -3.5234 39 1 5.2030 -0.4463 -5.2826 40 1 4.9587 -2.2060 -5.0237 41 1 6.4557 -0.2043 -3.2446 42 1 6.9971 -1.8194 -3.7954 43 1 5.6178 -4.7541 -1.8482 44 1 7.1717 -4.2649 -2.5654 45 1 8.2941 -4.6373 -0.3854 46 1 6.7397 -5.1263 0.3311 47 1 6.5774 -6.9926 -1.2929 48 1 8.1316 -6.5042 -2.0098 49 1 8.4543 -10.1478 -1.5804 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134572006.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:07 Heat of formation + Delta-G solvation = -112.282442 kcal Electronic energy + Delta-G solvation = -25488.407356 eV Core-core repulsion = 21962.062655 eV Total energy + Delta-G solvation = -3526.344701 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.19878 -36.97878 -36.63477 -35.72824 -34.66503 -32.19490 -31.95667 -31.08420 -27.79972 -27.60178 -27.29123 -23.99059 -23.52687 -22.00028 -21.17423 -20.46586 -19.98064 -18.65092 -17.57095 -16.75985 -16.31444 -15.73866 -15.48529 -15.27395 -14.63376 -14.50003 -14.27460 -14.15966 -13.83133 -13.74743 -13.43309 -13.00889 -12.59409 -12.53499 -12.31110 -12.24886 -12.10807 -11.90984 -11.77580 -11.76401 -11.64073 -11.58364 -11.40658 -11.24769 -10.99398 -10.92277 -10.89369 -10.83945 -10.71580 -10.69162 -10.44525 -10.27707 -9.95365 -9.49365 -9.21634 -8.86418 -8.41121 -6.06026 -4.09075 0.43831 2.77463 3.30293 3.36298 3.40547 4.00089 4.15110 4.30707 4.42444 4.53028 4.61214 4.72915 4.77682 4.79120 5.04942 5.13839 5.17817 5.21118 5.23189 5.30429 5.35882 5.37008 5.44344 5.49260 5.55958 5.60633 5.61488 5.65572 5.68011 5.76211 5.84919 5.88484 5.93151 5.98643 6.00404 6.12746 6.16652 6.24083 6.30581 6.40997 6.44672 6.46311 6.87071 7.56606 7.66524 7.92030 8.32571 8.97151 9.55633 11.05251 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017143 B = 0.002881 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.889150 B = 9718.194978 C =10403.911116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.100 4.100 3 C -0.148 4.148 4 C -0.108 4.108 5 C -0.155 4.155 6 C 0.154 3.846 7 H 0.074 0.926 8 C -0.123 4.123 9 C -0.133 4.133 10 C 0.121 3.879 11 N -1.014 6.014 12 S 2.612 3.388 13 O -0.959 6.959 14 O -0.954 6.954 15 C -0.609 4.609 16 C -0.106 4.106 17 C 0.031 3.969 18 C -0.526 4.526 19 H 0.058 0.942 20 C 0.057 3.943 21 N -0.896 5.896 22 Si 0.895 3.105 23 H -0.279 1.279 24 H -0.286 1.286 25 H -0.272 1.272 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.100 0.900 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.127 0.873 44 H 0.125 0.875 45 H 0.065 0.935 46 H 0.066 0.934 47 H 0.020 0.980 48 H 0.020 0.980 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.616 20.431 -6.098 25.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 C -0.206 4.206 4 C -0.146 4.146 5 C -0.194 4.194 6 C 0.048 3.952 7 H 0.092 0.908 8 C -0.162 4.162 9 C -0.172 4.172 10 C -0.004 4.004 11 N -0.850 5.850 12 S 2.710 3.290 13 O -0.950 6.950 14 O -0.944 6.944 15 C -0.741 4.741 16 C -0.145 4.145 17 C -0.007 4.007 18 C -0.564 4.564 19 H 0.076 0.924 20 C -0.144 4.144 21 N -0.535 5.535 22 Si 0.722 3.278 23 H -0.205 1.205 24 H -0.212 1.212 25 H -0.197 1.197 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.118 0.882 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.145 0.855 44 H 0.144 0.856 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.039 0.961 48 H 0.038 0.962 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.299 20.661 -5.311 25.138 hybrid contribution 0.421 -1.184 0.037 1.258 sum -12.877 19.477 -5.274 23.937 Atomic orbital electron populations 1.21840 0.95463 1.01655 1.01428 1.21144 0.95388 0.96402 0.98909 1.21883 1.01373 0.96004 1.01297 1.21567 0.94984 1.00512 0.97571 1.22451 0.95795 1.00775 1.00385 1.21334 0.79399 0.98897 0.95549 0.90811 1.22710 0.98198 1.00887 0.94386 1.22811 0.94616 1.02660 0.97125 1.21943 0.95747 0.98494 0.84238 1.58862 1.15607 1.71686 1.38848 1.05079 0.73441 0.77166 0.73321 1.93562 1.44733 1.71279 1.85392 1.93512 1.63065 1.87183 1.50690 1.30594 1.10617 1.21408 1.11475 1.21500 0.98300 0.99703 0.95004 1.19057 0.97345 0.87627 0.96694 1.21256 1.36993 0.95770 1.02428 0.92366 1.25022 0.95917 0.97853 0.95598 1.69959 1.47067 1.12813 1.23622 0.86550 0.79821 0.79838 0.81581 1.20545 1.21157 1.19725 0.92920 0.92692 0.92928 0.90877 0.92958 0.93038 0.92388 0.91811 0.92078 0.91593 0.88208 0.90337 0.90561 0.90171 0.90487 0.91353 0.90768 0.85501 0.85644 0.91660 0.91579 0.96142 0.96154 0.92893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.19 37.16 0.34 -0.75 16 2 C -0.10 -0.87 2.92 -90.62 -0.26 -1.14 16 3 C -0.15 -1.21 8.95 37.16 0.33 -0.87 16 4 C -0.11 -0.94 4.42 -26.73 -0.12 -1.06 16 5 C -0.16 -1.67 4.26 -26.73 -0.11 -1.78 16 6 C 0.15 1.57 3.06 -66.96 -0.20 1.37 16 7 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 8 C -0.12 -0.91 5.61 -24.90 -0.14 -1.05 16 9 C -0.13 -0.97 7.09 -24.58 -0.17 -1.15 16 10 C 0.12 1.18 6.96 -2.53 -0.02 1.17 16 11 N -1.01 -12.09 3.32 -104.42 -0.35 -12.44 16 12 S 2.61 40.26 5.61 -107.50 -0.60 39.66 16 13 O -0.96 -17.53 17.70 -57.54 -1.02 -18.55 16 14 O -0.95 -16.56 14.99 -57.54 -0.86 -17.42 16 15 C -0.61 -9.75 6.18 37.16 0.23 -9.53 16 16 C -0.11 -2.19 5.16 -26.73 -0.14 -2.33 16 17 C 0.03 0.80 4.97 -27.88 -0.14 0.66 16 18 C -0.53 -14.96 9.11 -34.44 -0.31 -15.28 16 19 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 21 N -0.90 -26.74 13.29 55.43 0.74 -26.01 16 22 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 25 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.51 6.68 -51.93 -0.35 0.16 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.45 7.57 -51.93 -0.39 0.06 16 35 H 0.07 0.69 6.75 -51.93 -0.35 0.34 16 36 H 0.10 1.35 5.52 -51.93 -0.29 1.06 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.53 7.79 -51.93 -0.40 0.12 16 39 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.13 1.84 8.14 -51.93 -0.42 1.42 16 44 H 0.13 1.81 8.14 -51.93 -0.42 1.39 16 45 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 46 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 47 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 394.18 15.07 5.94 5.94 Total: -1.00 -33.72 394.18 -11.35 -45.07 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -9.36 Total: -2.75 kcal Atomic # 6 Polarization: -29.36 SS G_CDS: -0.82 Total: -30.18 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.39 Total: -38.45 kcal Atomic # 8 Polarization: -34.09 SS G_CDS: -1.88 Total: -35.97 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 40.26 SS G_CDS: -0.60 Total: 39.66 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.72 -11.35 -45.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134572006.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.211 kcal (2) G-P(sol) polarization free energy of solvation -33.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds