Wall clock time and date at job start Tue Mar 31 2020 13:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46877 * 2 1 4 4 C 1.52998 * 109.46982 * 239.99936 * 2 1 3 5 5 C 1.52999 * 109.46972 * 184.99637 * 4 2 1 6 6 C 1.53001 * 109.47172 * 174.72044 * 5 4 2 7 7 H 1.09001 * 109.87634 * 304.10996 * 6 5 4 8 8 C 1.54319 * 109.88443 * 65.28541 * 6 5 4 9 9 C 1.55158 * 102.94366 * 141.61001 * 8 6 5 10 10 C 1.54908 * 101.58158 * 324.49972 * 9 8 6 11 11 N 1.47020 * 109.88429 * 183.09738 * 6 5 4 12 12 S 1.65600 * 125.65057 * 61.60179 * 11 6 5 13 13 O 1.42095 * 104.27828 * 212.18609 * 12 11 6 14 14 O 1.42098 * 104.27821 * 340.04426 * 12 11 6 15 15 C 1.81407 * 104.44621 * 96.11685 * 12 11 6 16 16 C 1.52998 * 109.46662 * 180.02562 * 15 12 11 17 17 C 1.53001 * 109.46912 * 179.97438 * 16 15 12 18 18 C 1.50697 * 109.47524 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99641 * 0.02562 * 18 17 16 20 20 C 1.37879 * 120.00287 * 179.97438 * 18 17 16 21 21 N 1.31510 * 119.99954 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99694 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46809 * 90.00421 * 22 20 18 24 24 H 1.48501 * 109.46855 * 210.00086 * 22 20 18 25 25 H 1.48492 * 109.47317 * 330.00072 * 22 20 18 26 26 H 1.08999 * 109.47308 * 60.00371 * 1 2 3 27 27 H 1.09003 * 109.46924 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47243 * 299.99785 * 1 2 3 29 29 H 1.09002 * 109.47048 * 120.00083 * 2 1 3 30 30 H 1.08999 * 109.46849 * 299.99910 * 3 2 1 31 31 H 1.08997 * 109.47008 * 60.00071 * 3 2 1 32 32 H 1.09002 * 109.46585 * 180.02562 * 3 2 1 33 33 H 1.08995 * 109.47262 * 304.99722 * 4 2 1 34 34 H 1.09003 * 109.47293 * 64.99809 * 4 2 1 35 35 H 1.08993 * 109.47506 * 294.72468 * 5 4 2 36 36 H 1.09003 * 109.47179 * 54.72541 * 5 4 2 37 37 H 1.08997 * 110.72236 * 259.97837 * 8 6 5 38 38 H 1.09003 * 110.71610 * 23.24581 * 8 6 5 39 39 H 1.09003 * 111.00089 * 206.42228 * 9 8 6 40 40 H 1.08996 * 111.03691 * 82.58912 * 9 8 6 41 41 H 1.09003 * 110.36767 * 278.16921 * 10 9 8 42 42 H 1.08997 * 110.36203 * 155.84677 * 10 9 8 43 43 H 1.08997 * 109.46833 * 299.99730 * 15 12 11 44 44 H 1.08997 * 109.47248 * 59.99973 * 15 12 11 45 45 H 1.09001 * 109.47685 * 299.99629 * 16 15 12 46 46 H 1.08999 * 109.47462 * 60.00528 * 16 15 12 47 47 H 1.09004 * 109.47422 * 300.00338 * 17 16 15 48 48 H 1.08997 * 109.47076 * 59.99903 * 17 16 15 49 49 H 0.97006 * 119.99744 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.8310 -1.1880 6 6 4.0640 -1.6658 -2.3691 7 1 3.5740 -2.6395 -2.3680 8 6 3.7717 -0.9291 -3.6932 9 6 5.0337 -1.2300 -4.5442 10 6 6.1449 -1.2256 -3.4649 11 7 5.5211 -1.8393 -2.2784 12 16 6.3281 -2.5975 -1.0471 13 8 7.5667 -1.9064 -0.9619 14 8 5.4069 -2.5862 0.0349 15 6 6.5835 -4.2900 -1.6481 16 6 7.3283 -5.1012 -0.5860 17 6 7.5432 -6.5288 -1.0926 18 6 8.2763 -7.3282 -0.0463 19 1 8.5601 -6.8644 0.8869 20 6 8.5837 -8.6518 -0.2799 21 7 8.2377 -9.2166 -1.4160 22 14 9.4918 -9.6427 1.0175 23 1 8.5093 -10.2888 1.9244 24 1 10.3159 -10.6862 0.3563 25 1 10.3720 -8.7409 1.8030 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6055 -1.7198 -1.2951 34 1 1.7516 -0.1584 -2.1370 35 1 4.0031 0.1658 -1.2366 36 1 3.8574 -1.3113 -0.2543 37 1 2.8792 -1.3334 -4.1706 38 1 3.6676 0.1426 -3.5234 39 1 5.2030 -0.4463 -5.2826 40 1 4.9587 -2.2060 -5.0237 41 1 6.4557 -0.2043 -3.2446 42 1 6.9971 -1.8194 -3.7954 43 1 5.6178 -4.7541 -1.8482 44 1 7.1717 -4.2649 -2.5654 45 1 8.2941 -4.6373 -0.3854 46 1 6.7397 -5.1263 0.3311 47 1 6.5774 -6.9926 -1.2929 48 1 8.1316 -6.5042 -2.0098 49 1 8.4543 -10.1478 -1.5804 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134572006.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:06 Heat of formation + Delta-G solvation = -132.559951 kcal Electronic energy + Delta-G solvation = -25489.286654 eV Core-core repulsion = 21962.062655 eV Total energy + Delta-G solvation = -3527.224000 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.97090 -38.26568 -37.38324 -37.07715 -36.50892 -34.19923 -32.71584 -31.86338 -29.68794 -28.27747 -27.93303 -25.69253 -24.52482 -22.87290 -22.28031 -21.82161 -20.67217 -19.80405 -18.66855 -18.58153 -17.53086 -17.15068 -16.58612 -16.45131 -16.04061 -15.82323 -15.33706 -14.98685 -14.67554 -14.50207 -14.41582 -14.26671 -14.09642 -13.69303 -13.56252 -13.26584 -13.18701 -13.14665 -13.03336 -12.91590 -12.77927 -12.75458 -12.64509 -12.42215 -12.30929 -12.18042 -12.02877 -11.80425 -11.62593 -11.57859 -11.44517 -11.41397 -11.35942 -11.16423 -11.03654 -10.60258 -9.89163 -8.25198 -6.36645 -0.81761 1.38536 1.39518 1.50995 1.66724 2.37939 2.76555 3.04590 3.08237 3.52993 3.75180 3.75677 3.83614 3.93153 4.06776 4.11069 4.18263 4.33566 4.36064 4.44857 4.53352 4.58571 4.64647 4.68712 4.80356 4.84477 4.88707 4.91025 4.94662 4.99043 5.04061 5.06778 5.08624 5.11262 5.15771 5.22535 5.31145 5.38257 5.41303 5.42186 5.48240 5.55517 5.58222 5.59736 5.64649 5.75912 6.16430 6.78540 7.32818 8.86447 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017143 B = 0.002881 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.889150 B = 9718.194978 C =10403.911116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.104 4.104 3 C -0.146 4.146 4 C -0.103 4.103 5 C -0.155 4.155 6 C 0.143 3.857 7 H 0.077 0.923 8 C -0.115 4.115 9 C -0.125 4.125 10 C 0.106 3.894 11 N -1.010 6.010 12 S 2.635 3.365 13 O -0.989 6.989 14 O -0.976 6.976 15 C -0.610 4.610 16 C -0.106 4.106 17 C 0.033 3.967 18 C -0.554 4.554 19 H 0.060 0.940 20 C 0.003 3.997 21 N -0.930 5.930 22 Si 0.964 3.036 23 H -0.271 1.271 24 H -0.279 1.279 25 H -0.265 1.265 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.046 0.954 33 H 0.062 0.938 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.103 0.897 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.142 0.858 44 H 0.141 0.859 45 H 0.064 0.936 46 H 0.066 0.934 47 H 0.002 0.998 48 H 0.002 0.998 49 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.587 21.467 -7.133 26.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.123 4.123 3 C -0.204 4.204 4 C -0.141 4.141 5 C -0.194 4.194 6 C 0.038 3.962 7 H 0.095 0.905 8 C -0.154 4.154 9 C -0.163 4.163 10 C -0.018 4.018 11 N -0.849 5.849 12 S 2.733 3.267 13 O -0.980 6.980 14 O -0.967 6.967 15 C -0.740 4.740 16 C -0.145 4.145 17 C -0.006 4.006 18 C -0.592 4.592 19 H 0.078 0.922 20 C -0.195 4.195 21 N -0.570 5.570 22 Si 0.788 3.212 23 H -0.196 1.196 24 H -0.204 1.204 25 H -0.189 1.189 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.101 0.899 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.117 0.883 38 H 0.104 0.896 39 H 0.121 0.879 40 H 0.099 0.901 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.160 0.840 44 H 0.159 0.841 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.021 0.979 48 H 0.021 0.979 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.265 21.693 -6.338 26.725 hybrid contribution 0.688 -1.458 0.323 1.644 sum -13.577 20.235 -6.015 25.099 Atomic orbital electron populations 1.21807 0.94266 1.01821 1.02151 1.21166 0.96411 0.96584 0.98126 1.21863 1.00631 0.95739 1.02122 1.21541 0.93302 1.00862 0.98363 1.22406 0.97403 1.00457 0.99131 1.21631 0.78003 0.99538 0.97059 0.90534 1.22727 0.99049 1.01158 0.92463 1.22821 0.93135 1.03814 0.96577 1.22269 0.96961 0.98473 0.84126 1.58569 1.16645 1.70755 1.38889 1.04116 0.72661 0.76552 0.73411 1.93518 1.46537 1.71759 1.86161 1.93493 1.63384 1.87327 1.52455 1.30558 1.11041 1.21784 1.10632 1.21311 0.99147 0.97619 0.96403 1.18947 0.95685 0.90346 0.95594 1.21729 1.37550 0.96729 1.03189 0.92205 1.25949 0.96688 0.99051 0.97848 1.70071 1.48057 1.13353 1.25476 0.85462 0.78672 0.78233 0.78820 1.19622 1.20380 1.18917 0.91689 0.92821 0.92717 0.93068 0.91562 0.92798 0.93518 0.91879 0.89902 0.91567 0.91512 0.88289 0.89606 0.87862 0.90075 0.91074 0.90478 0.84008 0.84085 0.91741 0.91575 0.97915 0.97919 0.92551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.19 71.98 0.66 -1.27 16 2 C -0.10 -1.74 2.92 -10.79 -0.03 -1.77 16 3 C -0.15 -2.22 8.95 71.98 0.64 -1.58 16 4 C -0.10 -1.63 4.42 30.59 0.14 -1.49 16 5 C -0.16 -3.23 4.26 30.59 0.13 -3.10 16 6 C 0.14 2.69 3.06 45.34 0.14 2.83 16 7 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 8 C -0.12 -1.33 5.61 31.78 0.18 -1.15 16 9 C -0.12 -1.42 7.09 31.99 0.23 -1.19 16 10 C 0.11 1.89 6.96 86.85 0.60 2.49 16 11 N -1.01 -23.10 3.32 -484.28 -1.61 -24.71 16 12 S 2.63 81.60 5.61 -56.49 -0.32 81.28 16 13 O -0.99 -36.47 17.70 -127.65 -2.26 -38.73 16 14 O -0.98 -34.64 14.99 -127.65 -1.91 -36.56 16 15 C -0.61 -19.53 6.18 71.98 0.44 -19.08 16 16 C -0.11 -4.47 5.16 30.59 0.16 -4.31 16 17 C 0.03 1.72 4.97 29.85 0.15 1.87 16 18 C -0.55 -32.06 9.11 25.60 0.23 -31.82 16 19 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 20 C 0.00 0.17 5.46 84.66 0.46 0.63 16 21 N -0.93 -56.22 13.29 21.45 0.28 -55.94 16 22 Si 0.96 44.58 29.54 68.60 2.03 46.61 16 23 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 24 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 25 H -0.26 -11.82 7.11 99.48 0.71 -11.12 16 26 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.76 16 32 H 0.05 0.80 6.68 -2.39 -0.02 0.79 16 33 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.08 0.97 7.57 -2.39 -0.02 0.95 16 35 H 0.07 1.34 6.75 -2.39 -0.02 1.32 16 36 H 0.07 1.86 5.52 -2.39 -0.01 1.85 16 37 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.09 0.86 7.79 -2.39 -0.02 0.85 16 39 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.14 4.07 8.14 -2.39 -0.02 4.05 16 44 H 0.14 4.02 8.14 -2.39 -0.02 4.00 16 45 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 46 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 47 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 48 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 49 H 0.27 15.02 8.31 -92.70 -0.77 14.25 16 Total: -1.00 -73.55 394.18 1.23 -72.32 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 0.88 Total: 14.67 kcal Atomic # 6 Polarization: -63.08 SS G_CDS: 4.14 Total: -58.95 kcal Atomic # 7 Polarization: -79.33 SS G_CDS: -1.32 Total: -80.65 kcal Atomic # 8 Polarization: -71.12 SS G_CDS: -4.17 Total: -75.29 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Atomic # 16 Polarization: 81.60 SS G_CDS: -0.32 Total: 81.28 kcal Total: -73.55 1.23 -72.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134572006.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.236 kcal (2) G-P(sol) polarization free energy of solvation -73.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds