Wall clock time and date at job start Tue Mar 31 2020 12:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.53006 * 109.47164 * 120.00099 * 2 1 3 5 5 C 1.52997 * 109.47164 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.46975 * 179.97438 * 5 4 2 7 7 C 1.53005 * 109.47245 * 60.00405 * 6 5 4 8 8 N 1.46500 * 109.47137 * 59.99615 * 7 6 5 9 9 S 1.65599 * 120.00057 * 95.00043 * 8 7 6 10 10 O 1.42097 * 104.27862 * 181.06940 * 9 8 7 11 11 O 1.42100 * 104.27565 * 308.93345 * 9 8 7 12 12 C 1.81406 * 104.44519 * 64.99836 * 9 8 7 13 13 C 1.52998 * 109.47063 * 179.97438 * 12 9 8 14 14 C 1.53003 * 109.47146 * 180.02562 * 13 12 9 15 15 C 1.50695 * 109.46933 * 180.02562 * 14 13 12 16 16 H 1.08003 * 120.00445 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00301 * 180.02562 * 15 14 13 18 18 N 1.31517 * 119.99476 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00750 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47035 * 59.99723 * 19 17 15 21 21 H 1.48496 * 109.47719 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.47109 * 300.00310 * 19 17 15 23 23 C 1.53000 * 109.46632 * 300.00027 * 7 6 5 24 24 C 1.52996 * 109.47518 * 59.99681 * 23 7 6 25 25 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47375 * 299.99867 * 1 2 3 27 27 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 28 28 H 1.09001 * 109.47375 * 240.00133 * 2 1 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 31 31 H 1.09001 * 109.47289 * 60.00075 * 3 2 1 32 32 H 1.09001 * 109.46998 * 299.99705 * 4 2 1 33 33 H 1.09001 * 109.47375 * 300.00034 * 5 4 2 34 34 H 1.09000 * 109.47140 * 60.00051 * 5 4 2 35 35 H 1.09001 * 109.47367 * 299.99815 * 6 5 4 36 36 H 1.09004 * 109.47108 * 180.02562 * 6 5 4 37 37 H 1.08992 * 109.47199 * 180.02562 * 7 6 5 38 38 H 0.97005 * 119.99784 * 275.00454 * 8 7 6 39 39 H 1.08993 * 109.47345 * 300.00449 * 12 9 8 40 40 H 1.09009 * 109.46798 * 60.00030 * 12 9 8 41 41 H 1.08997 * 109.47291 * 300.00765 * 13 12 9 42 42 H 1.09009 * 109.46968 * 60.00528 * 13 12 9 43 43 H 1.08997 * 109.47115 * 300.00015 * 14 13 12 44 44 H 1.09000 * 109.46768 * 60.00378 * 14 13 12 45 45 H 0.96998 * 119.99818 * 180.02562 * 18 17 15 46 46 H 1.09001 * 109.47194 * 299.99548 * 23 7 6 47 47 H 1.09000 * 109.46968 * 179.97438 * 23 7 6 48 48 H 1.08996 * 109.47452 * 180.02562 * 24 23 7 49 49 H 1.09001 * 109.46997 * 59.99746 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5700 -0.7219 1.2490 6 6 4.0799 -1.4426 2.4985 7 6 3.5695 -2.8849 2.4994 8 7 4.0573 -3.5764 1.3035 9 16 5.4406 -4.4837 1.3780 10 8 5.6127 -4.9698 0.0539 11 8 6.3974 -3.6158 1.9700 12 6 5.0299 -5.8430 2.5069 13 6 6.2427 -6.7632 2.6596 14 6 5.8961 -7.9101 3.6112 15 6 7.0909 -8.8160 3.7620 16 1 8.0060 -8.5957 3.2325 17 6 7.0158 -9.9263 4.5761 18 7 5.9016 -10.1944 5.2213 19 14 8.4969 -11.0490 4.7637 20 1 9.6376 -10.2753 5.3165 21 1 8.1606 -12.1622 5.6872 22 1 8.8704 -11.6016 3.4368 23 6 2.0395 -2.8843 2.4996 24 6 1.5295 -2.1636 1.2502 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 -0.2074 2.1393 33 1 3.9330 -1.2359 0.3590 34 1 3.9337 0.3057 1.2488 35 1 3.7170 -0.9281 3.3883 36 1 5.1700 -1.4426 2.4985 37 1 3.9324 -3.3982 3.3898 38 1 3.5700 -3.5026 0.4680 39 1 4.7568 -5.4367 3.4807 40 1 4.1921 -6.4108 2.1021 41 1 6.5155 -7.1694 1.6856 42 1 7.0808 -6.1956 3.0642 43 1 5.6232 -7.5041 4.5852 44 1 5.0582 -8.4775 3.2062 45 1 5.8488 -10.9753 5.7943 46 1 1.6764 -2.3699 3.3894 47 1 1.6757 -3.9119 2.4998 48 1 0.4395 -2.1628 1.2506 49 1 1.8925 -2.6780 0.3604 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153042293.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:29 Heat of formation + Delta-G solvation = -124.394854 kcal Electronic energy + Delta-G solvation = -25496.055065 eV Core-core repulsion = 21969.185131 eV Total energy + Delta-G solvation = -3526.869934 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.84121 -36.87727 -36.20105 -35.68579 -34.66522 -32.40370 -32.18350 -31.16084 -28.69858 -27.80454 -27.45710 -23.74276 -23.27840 -22.61128 -20.75006 -20.29527 -20.00246 -18.89092 -17.62951 -16.65158 -16.27681 -15.84025 -15.61849 -15.24056 -14.64910 -14.57034 -14.45271 -14.24699 -14.01539 -13.75531 -13.49981 -12.77290 -12.70800 -12.58228 -12.53508 -12.29003 -11.99279 -11.92490 -11.80473 -11.74584 -11.63049 -11.61364 -11.31831 -11.29637 -11.20647 -11.04599 -10.89522 -10.86555 -10.64526 -10.49851 -10.32037 -10.10820 -9.94093 -9.58969 -9.30494 -9.06950 -8.40457 -6.05663 -4.08707 0.51116 2.89943 3.32207 3.35990 3.39278 3.97432 4.29029 4.39082 4.42569 4.46411 4.48232 4.66799 4.81827 4.83651 4.99916 5.06008 5.11223 5.18356 5.26246 5.29562 5.30697 5.31719 5.32381 5.38371 5.46250 5.52272 5.55707 5.67227 5.70345 5.78342 5.82047 5.89870 5.91974 5.96393 5.99520 6.07695 6.16976 6.23805 6.27303 6.31209 6.45599 6.87339 6.98220 7.56672 7.66927 7.92305 8.32938 8.97303 9.55897 11.05544 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.031008 B = 0.002515 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.779913 B =11131.690040 C =11478.065153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.094 4.094 3 C -0.149 4.149 4 C -0.083 4.083 5 C -0.114 4.114 6 C -0.138 4.138 7 C 0.154 3.846 8 N -1.117 6.117 9 S 2.599 3.401 10 O -0.966 6.966 11 O -0.961 6.961 12 C -0.610 4.610 13 C -0.106 4.106 14 C 0.031 3.969 15 C -0.527 4.527 16 H 0.057 0.943 17 C 0.057 3.943 18 N -0.896 5.896 19 Si 0.895 3.105 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 C -0.126 4.126 24 C -0.117 4.117 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.413 0.587 39 H 0.125 0.875 40 H 0.128 0.872 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.020 0.980 44 H 0.020 0.980 45 H 0.262 0.738 46 H 0.075 0.925 47 H 0.072 0.928 48 H 0.067 0.933 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.663 21.836 -7.761 26.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.112 4.112 3 C -0.207 4.207 4 C -0.101 4.101 5 C -0.152 4.152 6 C -0.177 4.177 7 C 0.046 3.954 8 N -0.876 5.876 9 S 2.695 3.305 10 O -0.957 6.957 11 O -0.950 6.950 12 C -0.742 4.742 13 C -0.145 4.145 14 C -0.007 4.007 15 C -0.565 4.565 16 H 0.076 0.924 17 C -0.144 4.144 18 N -0.535 5.535 19 Si 0.723 3.277 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.201 1.201 23 C -0.165 4.165 24 C -0.154 4.154 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.248 0.752 39 H 0.144 0.856 40 H 0.146 0.854 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.038 0.962 44 H 0.038 0.962 45 H 0.072 0.928 46 H 0.094 0.906 47 H 0.090 0.910 48 H 0.086 0.914 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.844 21.915 -7.942 26.146 hybrid contribution -0.028 -0.999 0.275 1.036 sum -11.872 20.916 -7.667 25.243 Atomic orbital electron populations 1.21897 0.95440 1.01823 1.01470 1.21157 0.95552 0.96169 0.98343 1.21897 1.01349 0.95986 1.01437 1.21243 0.95554 0.95503 0.97826 1.21590 0.94628 1.00359 0.98582 1.22058 1.02316 0.94961 0.98410 1.20738 0.94738 0.93243 0.86648 1.55833 1.47671 1.65498 1.18557 1.05335 0.73586 0.75924 0.75701 1.93572 1.84689 1.81992 1.35419 1.93566 1.58730 1.63039 1.79704 1.30561 1.10359 1.17096 1.16166 1.21493 0.92583 0.97685 1.02748 1.19053 0.97195 0.91012 0.93462 1.21219 0.98694 1.08985 1.27604 0.92430 1.25022 0.96099 0.97740 0.95537 1.69948 1.26002 1.27755 1.29755 0.86608 0.82913 0.80154 0.78062 1.20115 1.21251 1.20115 1.21838 0.94233 1.01469 0.98978 1.21636 1.00500 0.95216 0.98096 0.92351 0.92833 0.93041 0.91291 0.92284 0.93038 0.92838 0.91165 0.91784 0.91743 0.91155 0.90081 0.89747 0.75236 0.85632 0.85351 0.91639 0.91597 0.96152 0.96152 0.92848 0.90632 0.90954 0.91431 0.91905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 8.84 37.16 0.33 -0.56 16 2 C -0.09 -0.62 2.51 -90.62 -0.23 -0.84 16 3 C -0.15 -0.95 8.84 37.16 0.33 -0.62 16 4 C -0.08 -0.57 1.77 -90.62 -0.16 -0.73 16 5 C -0.11 -0.94 4.69 -26.73 -0.13 -1.07 16 6 C -0.14 -1.28 5.64 -26.73 -0.15 -1.43 16 7 C 0.15 1.42 2.88 -67.93 -0.20 1.22 16 8 N -1.12 -11.73 4.63 -4.89 -0.02 -11.75 16 9 S 2.60 37.71 5.38 -107.50 -0.58 37.14 16 10 O -0.97 -17.04 18.08 -57.54 -1.04 -18.08 16 11 O -0.96 -16.49 17.11 -57.54 -0.98 -17.47 16 12 C -0.61 -9.31 5.96 37.16 0.22 -9.09 16 13 C -0.11 -2.15 5.16 -26.73 -0.14 -2.29 16 14 C 0.03 0.79 4.97 -27.88 -0.14 0.65 16 15 C -0.53 -14.89 9.11 -34.44 -0.31 -15.20 16 16 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 18 N -0.90 -26.61 13.29 55.43 0.74 -25.87 16 19 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 C -0.13 -0.93 5.63 -26.73 -0.15 -1.08 16 24 C -0.12 -0.80 4.67 -26.73 -0.12 -0.93 16 25 H 0.06 0.34 6.43 -51.93 -0.33 0.01 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.39 6.43 -51.93 -0.33 0.05 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.58 7.45 -51.93 -0.39 0.20 16 34 H 0.06 0.51 6.43 -51.93 -0.33 0.17 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.92 7.43 -51.93 -0.39 0.54 16 37 H 0.08 0.75 7.15 -51.93 -0.37 0.38 16 38 H 0.41 3.74 6.78 -34.47 -0.23 3.51 16 39 H 0.13 1.68 7.44 -51.93 -0.39 1.30 16 40 H 0.13 1.76 8.14 -51.92 -0.42 1.34 16 41 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.07 1.31 8.14 -51.92 -0.42 0.89 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 46 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 48 H 0.07 0.42 6.43 -51.93 -0.33 0.09 16 49 H 0.06 0.44 6.51 -51.93 -0.34 0.11 16 LS Contribution 383.99 15.07 5.79 5.79 Total: -1.00 -33.98 383.99 -10.97 -44.95 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -8.90 Total: -0.89 kcal Atomic # 6 Polarization: -29.48 SS G_CDS: -0.94 Total: -30.42 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: 0.71 Total: -37.62 kcal Atomic # 8 Polarization: -33.53 SS G_CDS: -2.02 Total: -35.55 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: 37.71 SS G_CDS: -0.58 Total: 37.14 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.98 -10.97 -44.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153042293.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.448 kcal (2) G-P(sol) polarization free energy of solvation -33.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds