Wall clock time and date at job start Tue Mar 31 2020 11:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52991 * 109.47395 * 2 1 4 4 C 1.52992 * 110.01934 * 64.14707 * 3 2 1 5 5 N 1.46505 * 109.47160 * 55.43205 * 4 3 2 6 6 C 1.34775 * 120.00031 * 185.14690 * 5 4 3 7 7 O 1.21590 * 120.00141 * 359.72471 * 6 5 4 8 8 C 1.47531 * 119.99819 * 179.97438 * 6 5 4 9 9 C 1.39668 * 120.20036 * 359.72822 * 8 6 5 10 10 C 1.37826 * 119.92159 * 179.97438 * 9 8 6 11 11 C 1.38574 * 120.32311 * 0.02562 * 10 9 8 12 12 C 1.38022 * 120.40037 * 359.97438 * 11 10 9 13 13 C 1.38831 * 120.07440 * 359.71654 * 12 11 10 14 14 O 1.35523 * 120.16641 * 180.28152 * 13 12 11 15 15 C 1.34818 * 116.99264 * 354.14869 * 14 13 12 16 16 H 1.07999 * 120.00732 * 5.08750 * 15 14 13 17 17 C 1.38700 * 119.99480 * 185.08910 * 15 14 13 18 18 N 1.31518 * 120.00144 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00053 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46864 * 59.99805 * 19 17 15 21 21 H 1.48497 * 109.47434 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47128 * 300.00407 * 19 17 15 23 23 C 1.54266 * 110.03187 * 185.54185 * 3 2 1 24 24 C 1.54964 * 104.16440 * 95.75367 * 23 3 2 25 25 C 1.54889 * 102.77704 * 37.88606 * 24 23 3 26 26 C 1.53877 * 110.02952 * 302.75313 * 3 2 1 27 27 H 1.08997 * 109.46651 * 65.07217 * 1 2 3 28 28 H 1.08995 * 109.47339 * 185.07333 * 1 2 3 29 29 H 1.08994 * 109.46591 * 305.07767 * 1 2 3 30 30 H 1.09001 * 109.46722 * 239.99528 * 2 1 3 31 31 H 1.09002 * 109.46951 * 120.00056 * 2 1 3 32 32 H 1.09003 * 109.47242 * 295.42854 * 4 3 2 33 33 H 1.09003 * 109.47217 * 175.42821 * 4 3 2 34 34 H 0.97000 * 119.99519 * 5.14019 * 5 4 3 35 35 H 1.08006 * 120.03416 * 0.02562 * 9 8 6 36 36 H 1.08001 * 119.83897 * 179.97438 * 10 9 8 37 37 H 1.07995 * 119.79863 * 179.97438 * 11 10 9 38 38 H 1.08005 * 119.95992 * 179.97438 * 12 11 10 39 39 H 0.97007 * 120.00413 * 179.97438 * 18 17 15 40 40 H 1.08996 * 110.48796 * 214.40245 * 23 3 2 41 41 H 1.09007 * 110.48833 * 337.04053 * 23 3 2 42 42 H 1.09009 * 110.71744 * 279.57407 * 24 23 3 43 43 H 1.09000 * 110.92762 * 156.29756 * 24 23 3 44 44 H 1.08998 * 110.48650 * 203.41123 * 25 24 23 45 45 H 1.08995 * 110.48639 * 80.76283 * 25 24 23 46 46 H 1.08993 * 110.03620 * 359.95782 * 26 3 2 47 47 H 1.09005 * 110.02929 * 121.38743 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.6237 2.1452 1.2936 5 7 2.1001 1.3730 2.4440 6 6 1.7604 1.7466 3.6936 7 8 1.0628 2.7273 3.8665 8 6 2.2396 0.9687 4.8519 9 6 3.0408 -0.1589 4.6581 10 6 3.4857 -0.8811 5.7444 11 6 3.1418 -0.4946 7.0299 12 6 2.3508 0.6174 7.2368 13 6 1.8987 1.3607 6.1549 14 8 1.1266 2.4562 6.3562 15 6 0.7319 2.7025 7.6215 16 1 1.0985 2.0885 8.4309 17 6 -0.1451 3.7445 7.8839 18 7 -0.5912 4.4925 6.8985 19 14 -0.6927 4.0854 9.6370 20 1 0.4937 4.3954 10.4747 21 1 -1.6226 5.2431 9.6489 22 1 -1.3838 2.8890 10.1813 23 6 3.5763 1.4597 -0.1400 24 6 3.8166 1.6626 -1.6574 25 6 2.6928 2.6525 -2.0527 26 6 1.4784 2.2000 -1.2158 27 1 -0.3632 0.4331 -0.9319 28 1 -0.3634 -1.0236 0.0909 29 1 -0.3632 0.5906 0.8410 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 0.5371 2.2216 1.3321 33 1 2.0594 3.1440 1.3210 34 1 2.6598 0.5929 2.3061 35 1 3.3120 -0.4639 3.6581 36 1 4.1048 -1.7530 5.5929 37 1 3.4947 -1.0669 7.8750 38 1 2.0866 0.9120 8.2418 39 1 -1.2049 5.2211 7.0819 40 1 4.0018 2.2873 0.4275 41 1 4.0002 0.5114 0.1908 42 1 3.7079 0.7202 -2.1944 43 1 4.7983 2.0992 -1.8411 44 1 2.4727 2.5743 -3.1174 45 1 2.9751 3.6731 -1.7945 46 1 0.8431 1.5399 -1.8063 47 1 0.9092 3.0685 -0.8842 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154706725.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:17 Heat of formation + Delta-G solvation = -76.337806 kcal Electronic energy + Delta-G solvation = -27032.153399 eV Core-core repulsion = 23371.923423 eV Total energy + Delta-G solvation = -3660.229976 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.43349 -40.55965 -39.33152 -38.01700 -35.53580 -34.32936 -33.66742 -32.12424 -30.57096 -29.73814 -29.48932 -27.39897 -26.14976 -24.42601 -23.72596 -22.97341 -21.78394 -21.13914 -19.91053 -19.71818 -18.93969 -17.85433 -17.17009 -16.61937 -16.43417 -16.20120 -15.95369 -15.85185 -15.52882 -15.37119 -15.28761 -15.04166 -14.61389 -14.31858 -14.16356 -14.09586 -13.55123 -13.31860 -13.20239 -12.96520 -12.70351 -12.69646 -12.50263 -12.39097 -12.32916 -12.15285 -11.94735 -11.86126 -11.45826 -11.40690 -11.35331 -11.32133 -11.21524 -10.82683 -10.59428 -10.07182 -9.76618 -9.03491 -8.44526 -6.15958 0.12852 0.72851 1.31459 1.44674 1.49624 2.11421 2.15819 2.31635 2.87851 3.22828 3.47134 3.56718 3.62302 3.72433 3.99315 4.07760 4.19435 4.28877 4.29163 4.34462 4.39179 4.51525 4.58428 4.62839 4.63708 4.68252 4.78488 4.82027 4.88315 4.95624 4.99207 5.06554 5.07312 5.12765 5.13060 5.14199 5.28519 5.29928 5.37832 5.46243 5.48511 5.50594 5.53182 5.60698 5.62617 5.69485 5.95796 6.17216 6.71899 6.94420 7.50831 7.80743 8.75831 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015594 B = 0.003489 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.157282 B = 8023.233458 C = 9136.445016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.105 4.105 3 C -0.063 4.063 4 C 0.137 3.863 5 N -0.710 5.710 6 C 0.545 3.455 7 O -0.572 6.572 8 C -0.245 4.245 9 C -0.030 4.030 10 C -0.199 4.199 11 C -0.040 4.040 12 C -0.258 4.258 13 C 0.148 3.852 14 O -0.190 6.190 15 C -0.430 4.430 16 H 0.107 0.893 17 C -0.022 4.022 18 N -0.906 5.906 19 Si 1.022 2.978 20 H -0.253 1.253 21 H -0.273 1.273 22 H -0.254 1.254 23 C -0.119 4.119 24 C -0.116 4.116 25 C -0.124 4.124 26 C -0.117 4.117 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.028 0.972 30 H 0.090 0.910 31 H 0.063 0.937 32 H 0.042 0.958 33 H 0.039 0.961 34 H 0.409 0.591 35 H 0.158 0.842 36 H 0.165 0.835 37 H 0.155 0.845 38 H 0.123 0.877 39 H 0.270 0.730 40 H 0.053 0.947 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.071 0.929 44 H 0.078 0.922 45 H 0.055 0.945 46 H 0.085 0.915 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.912 -13.274 -15.063 22.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.142 4.142 3 C -0.063 4.063 4 C 0.013 3.987 5 N -0.366 5.366 6 C 0.335 3.665 7 O -0.452 6.452 8 C -0.250 4.250 9 C -0.049 4.049 10 C -0.218 4.218 11 C -0.058 4.058 12 C -0.277 4.277 13 C 0.093 3.907 14 O -0.092 6.092 15 C -0.506 4.506 16 H 0.124 0.876 17 C -0.221 4.221 18 N -0.542 5.542 19 Si 0.840 3.160 20 H -0.177 1.177 21 H -0.198 1.198 22 H -0.178 1.178 23 C -0.156 4.156 24 C -0.153 4.153 25 C -0.162 4.162 26 C -0.154 4.154 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.047 0.953 30 H 0.108 0.892 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.248 0.752 35 H 0.175 0.825 36 H 0.183 0.817 37 H 0.172 0.828 38 H 0.141 0.859 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.102 0.898 42 H 0.100 0.900 43 H 0.089 0.911 44 H 0.097 0.903 45 H 0.074 0.926 46 H 0.103 0.897 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.167 -12.190 -15.158 21.503 hybrid contribution -0.585 0.706 1.019 1.371 sum 8.582 -11.484 -14.139 20.136 Atomic orbital electron populations 1.21875 0.96575 1.01652 1.01376 1.21599 0.95435 0.94262 1.02951 1.21434 0.96641 0.96044 0.92195 1.21439 0.98103 0.94135 0.85020 1.45625 1.54288 1.32550 1.04109 1.18576 0.79795 0.83987 0.84114 1.90925 1.39222 1.28915 1.86116 1.19327 1.12448 1.03289 0.89913 1.21277 0.92155 0.90537 1.00884 1.21178 1.05986 1.03324 0.91276 1.21436 0.92372 0.93017 0.99001 1.21306 1.07343 1.00888 0.98181 1.20096 0.89758 0.86541 0.94279 1.84185 1.57611 1.36876 1.30540 1.22015 1.28485 1.17401 0.82654 0.87586 1.26770 0.95466 0.94782 1.05100 1.70326 1.30870 1.18375 1.34584 0.84626 0.78819 0.78695 0.73832 1.17736 1.19793 1.17795 1.22537 0.93104 1.02307 0.97654 1.22468 0.98449 0.99811 0.94599 1.22367 0.94885 0.98989 0.99930 1.22276 0.98421 0.99531 0.95219 0.91546 0.92035 0.95327 0.89193 0.91842 0.93923 0.94250 0.75229 0.82480 0.81719 0.82785 0.85920 0.92067 0.92835 0.89802 0.90003 0.91062 0.90301 0.92620 0.89680 0.93145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.17 9.38 71.98 0.67 -2.49 16 2 C -0.11 -1.79 4.59 30.59 0.14 -1.65 16 3 C -0.06 -1.25 0.41 -51.46 -0.02 -1.27 16 4 C 0.14 4.24 3.87 86.38 0.33 4.57 16 5 N -0.71 -23.34 4.95 -466.27 -2.31 -25.65 16 6 C 0.55 25.58 7.76 86.69 0.67 26.25 16 7 O -0.57 -34.95 15.16 16.90 0.26 -34.69 16 8 C -0.25 -10.89 5.89 -19.99 -0.12 -11.01 16 9 C -0.03 -0.92 9.54 22.52 0.21 -0.71 16 10 C -0.20 -5.34 10.02 22.25 0.22 -5.12 16 11 C -0.04 -1.26 10.03 22.30 0.22 -1.04 16 12 C -0.26 -11.19 9.16 22.36 0.20 -10.98 16 13 C 0.15 7.80 6.66 22.91 0.15 7.96 16 14 O -0.19 -12.32 7.84 0.76 0.01 -12.31 16 15 C -0.43 -26.47 9.49 67.93 0.64 -25.82 16 16 H 0.11 5.84 5.21 -2.91 -0.02 5.82 16 17 C -0.02 -1.33 5.49 84.85 0.47 -0.86 16 18 N -0.91 -60.26 13.67 21.62 0.30 -59.96 16 19 Si 1.02 44.86 29.55 68.60 2.03 46.88 16 20 H -0.25 -10.29 7.11 99.48 0.71 -9.58 16 21 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 22 H -0.25 -10.33 7.11 99.48 0.71 -9.62 16 23 C -0.12 -1.99 5.47 31.70 0.17 -1.81 16 24 C -0.12 -1.53 6.91 31.91 0.22 -1.31 16 25 C -0.12 -1.88 6.83 31.67 0.22 -1.66 16 26 C -0.12 -2.13 5.61 31.32 0.18 -1.95 16 27 H 0.07 1.16 6.48 -2.39 -0.02 1.15 16 28 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.03 0.76 6.45 -2.39 -0.02 0.74 16 30 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.06 1.07 6.63 -2.39 -0.02 1.05 16 32 H 0.04 1.54 6.70 -2.39 -0.02 1.53 16 33 H 0.04 1.38 8.05 -2.39 -0.02 1.36 16 34 H 0.41 9.96 4.98 -92.71 -0.46 9.50 16 35 H 0.16 3.26 6.40 -2.91 -0.02 3.24 16 36 H 0.17 2.82 8.06 -2.91 -0.02 2.80 16 37 H 0.15 3.53 8.06 -2.91 -0.02 3.50 16 38 H 0.12 5.39 5.64 -2.91 -0.02 5.37 16 39 H 0.27 16.50 8.31 -92.70 -0.77 15.73 16 40 H 0.05 1.10 7.79 -2.39 -0.02 1.08 16 41 H 0.08 1.12 7.84 -2.38 -0.02 1.10 16 42 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 43 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.08 1.32 6.15 -2.39 -0.01 1.30 16 47 H 0.05 1.10 7.67 -2.38 -0.02 1.08 16 Total: -1.00 -88.05 368.87 5.40 -82.65 By element: Atomic # 1 Polarization: 31.47 SS G_CDS: 0.52 Total: 32.00 kcal Atomic # 6 Polarization: -33.51 SS G_CDS: 4.60 Total: -28.91 kcal Atomic # 7 Polarization: -83.60 SS G_CDS: -2.01 Total: -85.61 kcal Atomic # 8 Polarization: -47.27 SS G_CDS: 0.26 Total: -47.01 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Total: -88.05 5.40 -82.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154706725.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.311 kcal (2) G-P(sol) polarization free energy of solvation -88.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds