Wall clock time and date at job start Tue Mar 31 2020 13:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46997 * 2 1 4 4 C 1.53006 * 109.46623 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46626 * 179.97438 * 4 3 2 6 6 C 1.52993 * 109.47522 * 295.00072 * 5 4 3 7 7 C 1.53002 * 109.47372 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.47328 * 59.99669 * 7 6 5 9 9 N 1.46503 * 109.46608 * 60.00434 * 8 7 6 10 10 S 1.65597 * 120.00050 * 95.00432 * 9 8 7 11 11 O 1.42103 * 104.27540 * 181.06747 * 10 9 8 12 12 O 1.42103 * 104.27560 * 308.91960 * 10 9 8 13 13 C 1.81398 * 104.45120 * 64.99569 * 10 9 8 14 14 C 1.53002 * 109.47006 * 179.97438 * 13 10 9 15 15 C 1.50699 * 109.46979 * 179.97438 * 14 13 10 16 16 H 1.07997 * 119.99923 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99652 * 180.02562 * 15 14 13 18 18 N 1.31511 * 119.99489 * 180.02562 * 17 15 14 19 19 Si 1.86790 * 120.00235 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.46976 * 90.00494 * 19 17 15 21 21 H 1.48504 * 109.47233 * 210.00356 * 19 17 15 22 22 H 1.48503 * 109.47429 * 330.00393 * 19 17 15 23 23 C 1.52998 * 109.47109 * 300.00806 * 8 7 6 24 24 C 1.52993 * 109.47626 * 59.99289 * 23 8 7 25 25 H 1.09001 * 109.47377 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46866 * 300.00212 * 1 2 3 27 27 H 1.08996 * 109.47261 * 59.99820 * 1 2 3 28 28 H 1.09000 * 109.46866 * 239.99788 * 2 1 3 29 29 H 1.09001 * 109.46611 * 119.99905 * 2 1 3 30 30 H 1.09000 * 109.47486 * 60.00167 * 3 2 1 31 31 H 1.09001 * 109.47362 * 299.99445 * 3 2 1 32 32 H 1.08993 * 109.46955 * 300.00075 * 4 3 2 33 33 H 1.09000 * 109.47050 * 59.99904 * 4 3 2 34 34 H 1.09002 * 109.47016 * 55.00506 * 5 4 3 35 35 H 1.09002 * 109.47330 * 300.00242 * 6 5 4 36 36 H 1.09000 * 109.47130 * 60.00256 * 6 5 4 37 37 H 1.09002 * 109.46816 * 300.00220 * 7 6 5 38 38 H 1.09000 * 109.47511 * 180.02562 * 7 6 5 39 39 H 1.08998 * 109.46865 * 180.02562 * 8 7 6 40 40 H 0.97003 * 119.99856 * 274.99998 * 9 8 7 41 41 H 1.08999 * 109.47149 * 300.00123 * 13 10 9 42 42 H 1.08998 * 109.46927 * 60.00058 * 13 10 9 43 43 H 1.08999 * 109.47376 * 300.00117 * 14 13 10 44 44 H 1.09005 * 109.46783 * 60.00157 * 14 13 10 45 45 H 0.97004 * 119.99860 * 179.97438 * 18 17 15 46 46 H 1.09007 * 109.46726 * 299.99156 * 23 8 7 47 47 H 1.09000 * 109.46821 * 180.02562 * 23 8 7 48 48 H 1.09000 * 109.47453 * 179.97438 * 24 23 8 49 49 H 1.09007 * 109.47176 * 60.00143 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0801 2.8849 0.0000 6 6 3.6759 3.5682 -1.3078 7 6 4.1864 5.0105 -1.3087 8 6 5.7113 5.0119 -1.1826 9 7 6.2954 4.2865 -2.3135 10 16 6.8009 5.1140 -3.6558 11 8 7.2757 4.1020 -4.5331 12 8 5.6882 5.9250 -4.0071 13 6 8.1750 6.1399 -3.0644 14 6 8.7349 6.9620 -4.2270 15 6 9.8760 7.8147 -3.7355 16 1 10.1721 7.7747 -2.6977 17 6 10.5415 8.6468 -4.6107 18 7 11.5377 9.3906 -4.1819 19 14 10.0290 8.7166 -6.4056 20 1 8.9940 9.7664 -6.5844 21 1 11.2106 9.0382 -7.2457 22 1 9.4748 7.4007 -6.8137 23 6 6.1154 4.3285 0.1253 24 6 5.6049 2.8863 0.1261 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6768 1.9563 -0.8900 32 1 3.9330 0.9287 0.8908 33 1 3.9338 0.9284 -0.8891 34 1 3.6451 3.4244 0.8414 35 1 4.1108 3.0287 -2.1492 36 1 2.5896 3.5669 -1.3978 37 1 3.7518 5.5503 -0.4673 38 1 3.8981 5.4975 -2.2403 39 1 6.0748 6.0395 -1.1827 40 1 6.3861 3.3215 -2.2759 41 1 7.8175 6.8110 -2.2834 42 1 8.9596 5.4993 -2.6619 43 1 9.0925 6.2906 -5.0077 44 1 7.9503 7.6026 -4.6299 45 1 12.0061 9.9758 -4.7976 46 1 5.6808 4.8684 0.9667 47 1 7.2017 4.3300 0.2153 48 1 5.8932 2.3993 1.0577 49 1 6.0395 2.3465 -0.7153 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171763923.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:39 Heat of formation + Delta-G solvation = -125.823329 kcal Electronic energy + Delta-G solvation = -25402.759765 eV Core-core repulsion = 21875.827887 eV Total energy + Delta-G solvation = -3526.931878 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.60409 -36.70114 -36.27952 -35.51685 -33.94895 -33.79612 -31.48364 -30.97926 -30.80106 -27.94878 -25.97143 -24.24688 -22.89783 -21.50613 -21.33910 -20.83157 -19.93945 -18.72308 -17.68934 -17.00389 -16.22171 -15.68347 -15.58357 -15.26253 -14.93475 -14.49221 -14.30225 -14.26115 -14.10067 -13.66670 -13.58800 -13.06726 -12.88905 -12.81044 -12.61746 -12.24350 -11.99678 -11.88842 -11.69736 -11.61375 -11.56957 -11.49983 -11.30445 -11.29880 -11.25010 -11.17485 -11.11058 -10.78615 -10.61903 -10.46185 -10.33920 -10.12064 -10.08322 -9.72729 -9.46015 -9.11061 -8.66349 -6.16694 -4.17808 0.71178 3.07204 3.26578 3.33920 3.38338 4.15163 4.31713 4.35872 4.47398 4.53886 4.63049 4.68424 4.75897 4.82187 4.91392 5.06884 5.09171 5.15271 5.18944 5.26948 5.29799 5.38215 5.39375 5.46977 5.50173 5.53636 5.56520 5.60920 5.65158 5.68291 5.74209 5.80738 5.87241 5.89469 5.98919 6.04108 6.07784 6.12183 6.21087 6.29727 6.30668 6.37493 6.82291 6.93434 7.11613 7.55004 8.36519 8.84418 9.43086 10.95655 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.031436 B = 0.002632 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.472138 B =10635.946261 C =11014.463037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.122 4.122 4 C -0.116 4.116 5 C -0.088 4.088 6 C -0.113 4.113 7 C -0.139 4.139 8 C 0.154 3.846 9 N -1.118 6.118 10 S 2.589 3.411 11 O -0.970 6.970 12 O -0.965 6.965 13 C -0.584 4.584 14 C -0.007 4.007 15 C -0.519 4.519 16 H 0.078 0.922 17 C 0.071 3.929 18 N -0.896 5.896 19 Si 0.870 3.130 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.262 1.262 23 C -0.126 4.126 24 C -0.114 4.114 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.411 0.589 41 H 0.123 0.877 42 H 0.126 0.874 43 H 0.032 0.968 44 H 0.028 0.972 45 H 0.266 0.734 46 H 0.074 0.926 47 H 0.072 0.928 48 H 0.063 0.937 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.278 -16.148 11.910 27.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.159 4.159 4 C -0.153 4.153 5 C -0.107 4.107 6 C -0.150 4.150 7 C -0.178 4.178 8 C 0.046 3.954 9 N -0.876 5.876 10 S 2.686 3.314 11 O -0.960 6.960 12 O -0.955 6.955 13 C -0.717 4.717 14 C -0.046 4.046 15 C -0.558 4.558 16 H 0.096 0.904 17 C -0.132 4.132 18 N -0.533 5.533 19 Si 0.696 3.304 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.186 1.186 23 C -0.165 4.165 24 C -0.152 4.152 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.246 0.754 41 H 0.141 0.859 42 H 0.144 0.856 43 H 0.050 0.950 44 H 0.046 0.954 45 H 0.076 0.924 46 H 0.093 0.907 47 H 0.091 0.909 48 H 0.081 0.919 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.570 -15.917 10.977 26.809 hybrid contribution 0.358 -0.044 -0.316 0.479 sum -18.213 -15.961 10.661 26.459 Atomic orbital electron populations 1.21782 0.96059 1.01445 1.01789 1.21547 0.95732 0.97212 1.01853 1.21678 0.95603 0.96471 1.02173 1.21655 0.95287 0.96492 1.01903 1.21212 0.95392 0.95679 0.98380 1.21574 1.00450 0.95748 0.97261 1.22060 0.95069 0.97319 1.03321 1.20724 0.93458 0.95279 0.85890 1.55846 1.78054 1.18963 1.34731 1.05594 0.76863 0.75276 0.73638 1.93555 1.82936 1.56928 1.62614 1.93547 1.49466 1.70937 1.81512 1.30309 1.16710 1.13497 1.11215 1.19402 0.98049 0.95495 0.91680 1.20851 1.14145 1.22800 0.98003 0.90433 1.24993 0.94541 0.94825 0.98820 1.69882 1.21637 1.26097 1.35730 0.86920 0.78735 0.79539 0.85225 1.19670 1.20765 1.18631 1.21827 1.01598 0.96295 0.96753 1.21565 0.95223 0.96617 1.01812 0.92954 0.92854 0.92742 0.92120 0.92260 0.92187 0.91658 0.92176 0.91995 0.91203 0.91786 0.91904 0.91226 0.90097 0.89662 0.75401 0.85853 0.85558 0.94990 0.95398 0.92396 0.90693 0.90920 0.91851 0.91873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 37.16 0.37 -0.55 16 2 C -0.13 -0.81 5.93 -26.73 -0.16 -0.97 16 3 C -0.12 -0.82 4.97 -26.73 -0.13 -0.96 16 4 C -0.12 -0.81 4.68 -26.73 -0.13 -0.94 16 5 C -0.09 -0.67 2.19 -90.62 -0.20 -0.86 16 6 C -0.11 -1.02 4.80 -26.73 -0.13 -1.15 16 7 C -0.14 -1.42 5.64 -26.73 -0.15 -1.57 16 8 C 0.15 1.61 2.88 -67.93 -0.20 1.41 16 9 N -1.12 -13.39 4.63 -4.89 -0.02 -13.41 16 10 S 2.59 43.02 5.38 -107.50 -0.58 42.44 16 11 O -0.97 -19.00 18.08 -57.54 -1.04 -20.04 16 12 O -0.96 -18.38 17.11 -57.54 -0.98 -19.37 16 13 C -0.58 -10.53 5.90 37.16 0.22 -10.31 16 14 C -0.01 -0.17 4.05 -27.88 -0.11 -0.28 16 15 C -0.52 -14.47 9.66 -34.44 -0.33 -14.80 16 16 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 17 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 18 N -0.90 -27.04 13.96 55.43 0.77 -26.27 16 19 Si 0.87 21.55 27.47 -169.99 -4.67 16.88 16 20 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 23 C -0.13 -1.05 5.63 -26.74 -0.15 -1.20 16 24 C -0.11 -0.88 5.02 -26.73 -0.13 -1.01 16 25 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.47 6.56 -51.93 -0.34 0.13 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.64 7.44 -51.93 -0.39 0.26 16 36 H 0.06 0.54 6.56 -51.93 -0.34 0.20 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.08 1.01 7.43 -51.93 -0.39 0.62 16 39 H 0.09 0.89 7.15 -51.93 -0.37 0.51 16 40 H 0.41 4.27 6.78 -34.47 -0.23 4.03 16 41 H 0.12 1.99 7.44 -51.92 -0.39 1.60 16 42 H 0.13 2.08 8.14 -51.93 -0.42 1.66 16 43 H 0.03 0.76 7.20 -51.93 -0.37 0.39 16 44 H 0.03 0.65 7.57 -51.93 -0.39 0.26 16 45 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 46 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 47 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.06 0.50 6.51 -51.93 -0.34 0.16 16 LS Contribution 385.05 15.07 5.80 5.80 Total: -1.00 -33.63 385.05 -11.10 -44.74 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -9.05 Total: 0.48 kcal Atomic # 6 Polarization: -29.91 SS G_CDS: -1.33 Total: -31.24 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: 0.75 Total: -39.68 kcal Atomic # 8 Polarization: -37.39 SS G_CDS: -2.02 Total: -39.41 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Atomic # 16 Polarization: 43.02 SS G_CDS: -0.58 Total: 42.44 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.63 -11.10 -44.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171763923.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.087 kcal (2) G-P(sol) polarization free energy of solvation -33.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds