Wall clock time and date at job start Tue Mar 31 2020 13:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46997 * 2 1 4 4 C 1.53006 * 109.46623 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46626 * 179.97438 * 4 3 2 6 6 C 1.52993 * 109.47522 * 295.00072 * 5 4 3 7 7 C 1.53002 * 109.47372 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.47328 * 59.99669 * 7 6 5 9 9 N 1.46503 * 109.46608 * 60.00434 * 8 7 6 10 10 S 1.65597 * 120.00050 * 95.00432 * 9 8 7 11 11 O 1.42103 * 104.27540 * 181.06747 * 10 9 8 12 12 O 1.42103 * 104.27560 * 308.91960 * 10 9 8 13 13 C 1.81398 * 104.45120 * 64.99569 * 10 9 8 14 14 C 1.53002 * 109.47006 * 179.97438 * 13 10 9 15 15 C 1.50699 * 109.46979 * 179.97438 * 14 13 10 16 16 H 1.07997 * 119.99923 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99652 * 180.02562 * 15 14 13 18 18 N 1.31511 * 119.99489 * 180.02562 * 17 15 14 19 19 Si 1.86790 * 120.00235 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.46976 * 90.00494 * 19 17 15 21 21 H 1.48504 * 109.47233 * 210.00356 * 19 17 15 22 22 H 1.48503 * 109.47429 * 330.00393 * 19 17 15 23 23 C 1.52998 * 109.47109 * 300.00806 * 8 7 6 24 24 C 1.52993 * 109.47626 * 59.99289 * 23 8 7 25 25 H 1.09001 * 109.47377 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46866 * 300.00212 * 1 2 3 27 27 H 1.08996 * 109.47261 * 59.99820 * 1 2 3 28 28 H 1.09000 * 109.46866 * 239.99788 * 2 1 3 29 29 H 1.09001 * 109.46611 * 119.99905 * 2 1 3 30 30 H 1.09000 * 109.47486 * 60.00167 * 3 2 1 31 31 H 1.09001 * 109.47362 * 299.99445 * 3 2 1 32 32 H 1.08993 * 109.46955 * 300.00075 * 4 3 2 33 33 H 1.09000 * 109.47050 * 59.99904 * 4 3 2 34 34 H 1.09002 * 109.47016 * 55.00506 * 5 4 3 35 35 H 1.09002 * 109.47330 * 300.00242 * 6 5 4 36 36 H 1.09000 * 109.47130 * 60.00256 * 6 5 4 37 37 H 1.09002 * 109.46816 * 300.00220 * 7 6 5 38 38 H 1.09000 * 109.47511 * 180.02562 * 7 6 5 39 39 H 1.08998 * 109.46865 * 180.02562 * 8 7 6 40 40 H 0.97003 * 119.99856 * 274.99998 * 9 8 7 41 41 H 1.08999 * 109.47149 * 300.00123 * 13 10 9 42 42 H 1.08998 * 109.46927 * 60.00058 * 13 10 9 43 43 H 1.08999 * 109.47376 * 300.00117 * 14 13 10 44 44 H 1.09005 * 109.46783 * 60.00157 * 14 13 10 45 45 H 0.97004 * 119.99860 * 179.97438 * 18 17 15 46 46 H 1.09007 * 109.46726 * 299.99156 * 23 8 7 47 47 H 1.09000 * 109.46821 * 180.02562 * 23 8 7 48 48 H 1.09000 * 109.47453 * 179.97438 * 24 23 8 49 49 H 1.09007 * 109.47176 * 60.00143 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0801 2.8849 0.0000 6 6 3.6759 3.5682 -1.3078 7 6 4.1864 5.0105 -1.3087 8 6 5.7113 5.0119 -1.1826 9 7 6.2954 4.2865 -2.3135 10 16 6.8009 5.1140 -3.6558 11 8 7.2757 4.1020 -4.5331 12 8 5.6882 5.9250 -4.0071 13 6 8.1750 6.1399 -3.0644 14 6 8.7349 6.9620 -4.2270 15 6 9.8760 7.8147 -3.7355 16 1 10.1721 7.7747 -2.6977 17 6 10.5415 8.6468 -4.6107 18 7 11.5377 9.3906 -4.1819 19 14 10.0290 8.7166 -6.4056 20 1 8.9940 9.7664 -6.5844 21 1 11.2106 9.0382 -7.2457 22 1 9.4748 7.4007 -6.8137 23 6 6.1154 4.3285 0.1253 24 6 5.6049 2.8863 0.1261 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6768 1.9563 -0.8900 32 1 3.9330 0.9287 0.8908 33 1 3.9338 0.9284 -0.8891 34 1 3.6451 3.4244 0.8414 35 1 4.1108 3.0287 -2.1492 36 1 2.5896 3.5669 -1.3978 37 1 3.7518 5.5503 -0.4673 38 1 3.8981 5.4975 -2.2403 39 1 6.0748 6.0395 -1.1827 40 1 6.3861 3.3215 -2.2759 41 1 7.8175 6.8110 -2.2834 42 1 8.9596 5.4993 -2.6619 43 1 9.0925 6.2906 -5.0077 44 1 7.9503 7.6026 -4.6299 45 1 12.0061 9.9758 -4.7976 46 1 5.6808 4.8684 0.9667 47 1 7.2017 4.3300 0.2153 48 1 5.8932 2.3993 1.0577 49 1 6.0395 2.3465 -0.7153 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171763923.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:37 Heat of formation + Delta-G solvation = -147.275302 kcal Electronic energy + Delta-G solvation = -25403.689992 eV Core-core repulsion = 21875.827887 eV Total energy + Delta-G solvation = -3527.862105 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.33050 -38.12369 -37.03023 -36.89831 -35.89173 -34.52621 -33.46935 -31.65591 -31.57792 -28.60155 -27.87773 -24.86356 -23.56723 -23.20331 -22.11973 -21.43242 -20.88276 -19.87127 -19.32699 -18.57927 -17.27215 -17.01149 -16.45075 -16.36302 -16.18026 -15.96552 -15.22313 -15.13871 -14.88058 -14.82379 -14.74760 -14.33983 -13.81411 -13.66404 -13.58791 -13.40569 -13.20974 -13.12120 -13.06328 -12.94072 -12.87024 -12.56341 -12.49066 -12.23842 -12.16187 -11.97304 -11.94105 -11.88593 -11.74353 -11.70731 -11.38461 -11.29844 -11.24918 -10.88001 -10.84519 -10.76504 -10.20341 -8.36646 -6.42042 -0.66537 1.31534 1.33498 1.43560 1.85926 2.29281 2.79217 2.97240 3.28826 3.71740 3.80744 3.85031 3.93007 4.07059 4.10961 4.13097 4.22875 4.30120 4.39935 4.44795 4.57306 4.58079 4.66186 4.67686 4.70704 4.77929 4.89838 4.93044 4.98581 5.03608 5.07812 5.08552 5.12602 5.21562 5.22392 5.28252 5.33365 5.35343 5.40256 5.46065 5.47423 5.48792 5.54080 5.62401 5.71080 6.16904 6.18622 6.63919 7.22188 8.78748 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.031436 B = 0.002632 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.472138 B =10635.946261 C =11014.463037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C -0.120 4.120 4 C -0.113 4.113 5 C -0.082 4.082 6 C -0.113 4.113 7 C -0.139 4.139 8 C 0.142 3.858 9 N -1.100 6.100 10 S 2.620 3.380 11 O -0.998 6.998 12 O -0.988 6.988 13 C -0.590 4.590 14 C -0.017 4.017 15 C -0.526 4.526 16 H 0.050 0.950 17 C 0.012 3.988 18 N -0.939 5.939 19 Si 0.925 3.075 20 H -0.260 1.260 21 H -0.274 1.274 22 H -0.251 1.251 23 C -0.122 4.122 24 C -0.115 4.115 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.078 0.922 35 H 0.051 0.949 36 H 0.066 0.934 37 H 0.088 0.912 38 H 0.055 0.945 39 H 0.087 0.913 40 H 0.422 0.578 41 H 0.140 0.860 42 H 0.140 0.860 43 H 0.030 0.970 44 H 0.031 0.969 45 H 0.269 0.731 46 H 0.091 0.909 47 H 0.075 0.925 48 H 0.076 0.924 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.636 -17.302 12.694 29.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.157 4.157 4 C -0.150 4.150 5 C -0.100 4.100 6 C -0.150 4.150 7 C -0.179 4.179 8 C 0.036 3.964 9 N -0.862 5.862 10 S 2.715 3.285 11 O -0.989 6.989 12 O -0.977 6.977 13 C -0.721 4.721 14 C -0.056 4.056 15 C -0.565 4.565 16 H 0.069 0.931 17 C -0.186 4.186 18 N -0.579 5.579 19 Si 0.747 3.253 20 H -0.185 1.185 21 H -0.199 1.199 22 H -0.175 1.175 23 C -0.161 4.161 24 C -0.153 4.153 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.106 0.894 38 H 0.074 0.926 39 H 0.105 0.895 40 H 0.259 0.741 41 H 0.158 0.842 42 H 0.158 0.842 43 H 0.048 0.952 44 H 0.049 0.951 45 H 0.079 0.921 46 H 0.109 0.891 47 H 0.093 0.907 48 H 0.095 0.905 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.926 -17.078 11.764 28.759 hybrid contribution 0.744 0.287 -0.437 0.910 sum -19.181 -16.791 11.326 27.895 Atomic orbital electron populations 1.21788 0.95834 1.01741 1.01770 1.21547 0.95963 0.97010 1.01843 1.21653 0.95488 0.96616 1.01967 1.21622 0.95346 0.96111 1.01950 1.21161 0.95438 0.95864 0.97578 1.21573 1.00605 0.95018 0.97821 1.22059 0.94946 0.98078 1.02779 1.21033 0.93635 0.95561 0.86198 1.55428 1.77308 1.19313 1.34169 1.04472 0.75776 0.74430 0.73790 1.93511 1.83334 1.57617 1.64417 1.93521 1.49966 1.71849 1.82394 1.30303 1.18056 1.13925 1.09801 1.19366 0.96883 0.95671 0.93719 1.21177 1.15217 1.23148 0.96951 0.93137 1.25876 0.94647 0.94678 1.03414 1.70007 1.23113 1.27317 1.37428 0.86029 0.78933 0.80292 0.80006 1.18496 1.19922 1.17462 1.21828 1.01917 0.96634 0.95679 1.21592 0.95121 0.96213 1.02370 0.92541 0.92550 0.93084 0.92548 0.91842 0.91826 0.92388 0.91409 0.92646 0.90382 0.93016 0.91581 0.89389 0.92647 0.89535 0.74084 0.84161 0.84204 0.95192 0.95095 0.92146 0.89060 0.90671 0.90528 0.92258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 71.98 0.71 -0.94 16 2 C -0.13 -1.43 5.93 30.60 0.18 -1.25 16 3 C -0.12 -1.41 4.97 30.60 0.15 -1.26 16 4 C -0.11 -1.34 4.68 30.60 0.14 -1.20 16 5 C -0.08 -1.04 2.19 -10.79 -0.02 -1.06 16 6 C -0.11 -1.87 4.80 30.59 0.15 -1.72 16 7 C -0.14 -2.64 5.64 30.60 0.17 -2.46 16 8 C 0.14 2.70 2.88 44.99 0.13 2.83 16 9 N -1.10 -24.65 4.63 -169.38 -0.78 -25.43 16 10 S 2.62 84.27 5.38 -56.49 -0.30 83.97 16 11 O -1.00 -38.16 18.08 -127.65 -2.31 -40.47 16 12 O -0.99 -36.82 17.11 -127.65 -2.18 -39.01 16 13 C -0.59 -20.68 5.90 71.98 0.42 -20.26 16 14 C -0.02 -0.81 4.05 29.85 0.12 -0.69 16 15 C -0.53 -29.64 9.66 25.60 0.25 -29.39 16 16 H 0.05 3.03 7.99 -2.91 -0.02 3.00 16 17 C 0.01 0.72 5.47 84.66 0.46 1.18 16 18 N -0.94 -57.66 13.96 21.45 0.30 -57.36 16 19 Si 0.92 44.02 27.47 68.60 1.88 45.91 16 20 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 21 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 22 H -0.25 -11.40 6.54 99.48 0.65 -10.75 16 23 C -0.12 -1.68 5.63 30.59 0.17 -1.51 16 24 C -0.12 -1.45 5.02 30.59 0.15 -1.29 16 25 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.06 0.56 8.14 -2.39 -0.02 0.55 16 27 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 0.77 6.56 -2.39 -0.02 0.75 16 32 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.05 0.98 7.44 -2.39 -0.02 0.96 16 36 H 0.07 1.05 6.56 -2.39 -0.02 1.03 16 37 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.05 1.34 7.43 -2.39 -0.02 1.32 16 39 H 0.09 1.63 7.15 -2.39 -0.02 1.62 16 40 H 0.42 8.02 6.78 -96.74 -0.66 7.36 16 41 H 0.14 4.37 7.44 -2.39 -0.02 4.35 16 42 H 0.14 4.47 8.14 -2.39 -0.02 4.45 16 43 H 0.03 1.40 7.20 -2.39 -0.02 1.39 16 44 H 0.03 1.42 7.57 -2.38 -0.02 1.40 16 45 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 46 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 47 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 49 H 0.06 0.79 6.51 -2.38 -0.02 0.78 16 Total: -1.00 -72.11 385.05 -0.01 -72.12 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: 0.19 Total: 19.31 kcal Atomic # 6 Polarization: -62.23 SS G_CDS: 3.20 Total: -59.03 kcal Atomic # 7 Polarization: -82.31 SS G_CDS: -0.48 Total: -82.79 kcal Atomic # 8 Polarization: -74.99 SS G_CDS: -4.49 Total: -79.48 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.88 Total: 45.91 kcal Atomic # 16 Polarization: 84.27 SS G_CDS: -0.30 Total: 83.97 kcal Total: -72.11 -0.01 -72.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171763923.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.157 kcal (2) G-P(sol) polarization free energy of solvation -72.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds