Wall clock time and date at job start Tue Mar 31 2020 13:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47015 * 2 1 4 4 C 1.52999 * 109.46987 * 120.00201 * 2 1 3 5 5 C 1.52994 * 109.47351 * 64.99897 * 4 2 1 6 6 C 1.52998 * 109.47052 * 179.97438 * 5 4 2 7 7 H 1.09004 * 110.05787 * 306.41589 * 6 5 4 8 8 C 1.54268 * 110.03217 * 67.83610 * 6 5 4 9 9 C 1.54886 * 104.19537 * 142.89362 * 8 6 5 10 10 C 1.54883 * 102.75081 * 322.05726 * 9 8 6 11 11 C 1.53876 * 110.03388 * 185.00041 * 6 5 4 12 12 H 1.09003 * 110.02862 * 0.04988 * 11 6 5 13 13 N 1.46503 * 110.03371 * 121.43118 * 11 6 5 14 14 S 1.65600 * 120.00062 * 215.00446 * 13 11 6 15 15 O 1.42107 * 104.27629 * 308.92771 * 14 13 11 16 16 O 1.42102 * 104.27841 * 181.06908 * 14 13 11 17 17 C 1.81404 * 104.45074 * 64.99734 * 14 13 11 18 18 C 1.53000 * 109.46946 * 180.02562 * 17 14 13 19 19 C 1.50703 * 109.46912 * 180.02562 * 18 17 14 20 20 H 1.08001 * 119.99776 * 0.02562 * 19 18 17 21 21 C 1.37877 * 120.00001 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00114 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99955 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46828 * 90.00636 * 23 21 19 25 25 H 1.48494 * 109.47178 * 210.00332 * 23 21 19 26 26 H 1.48500 * 109.47075 * 330.00579 * 23 21 19 27 27 H 1.09003 * 109.47171 * 300.00051 * 1 2 3 28 28 H 1.08997 * 109.47314 * 59.99756 * 1 2 3 29 29 H 1.09004 * 109.47121 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46872 * 240.00364 * 2 1 3 31 31 H 1.08990 * 109.47320 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47280 * 300.00265 * 3 2 1 33 33 H 1.09003 * 109.47193 * 59.99962 * 3 2 1 34 34 H 1.09002 * 109.46973 * 304.99520 * 4 2 1 35 35 H 1.09001 * 109.46580 * 185.00493 * 4 2 1 36 36 H 1.09004 * 109.46910 * 60.00090 * 5 4 2 37 37 H 1.08999 * 109.47066 * 300.00119 * 5 4 2 38 38 H 1.08994 * 110.48440 * 261.56780 * 8 6 5 39 39 H 1.08996 * 110.48757 * 24.08086 * 8 6 5 40 40 H 1.09003 * 110.75693 * 80.37488 * 9 8 6 41 41 H 1.09001 * 110.76006 * 203.74065 * 9 8 6 42 42 H 1.09008 * 110.48998 * 279.26543 * 10 9 8 43 43 H 1.09003 * 110.48911 * 156.62152 * 10 9 8 44 44 H 0.96993 * 119.99757 * 34.99701 * 13 11 6 45 45 H 1.09002 * 109.47124 * 60.00022 * 17 14 13 46 46 H 1.09001 * 109.46975 * 300.00144 * 17 14 13 47 47 H 1.09001 * 109.47194 * 299.99756 * 18 17 14 48 48 H 1.08992 * 109.47399 * 59.99928 * 18 17 14 49 49 H 0.97000 * 120.00354 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6352 -2.1954 1.1880 6 6 2.1458 -2.9168 2.4369 7 1 3.2167 -2.7502 2.5533 8 6 1.3934 -2.4099 3.6846 9 6 1.2201 -3.6736 4.5632 10 6 0.9366 -4.7806 3.5176 11 6 1.8553 -4.4242 2.3308 12 1 1.3514 -4.6419 1.3890 13 7 3.1052 -5.1835 2.4179 14 16 3.2925 -6.5738 1.5380 15 8 2.1336 -7.3387 1.8404 16 8 4.5889 -7.0383 1.8883 17 6 3.2589 -6.0237 -0.1903 18 6 3.4242 -7.2325 -1.1135 19 6 3.3969 -6.7754 -2.5493 20 1 3.2744 -5.7275 -2.7801 21 6 3.5294 -7.6949 -3.5681 22 7 3.6791 -8.9708 -3.2870 23 14 3.4949 -7.1284 -5.3478 24 1 4.8752 -6.8083 -5.7922 25 1 2.9384 -8.2092 -6.2006 26 1 2.6436 -5.9173 -5.4654 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6766 1.9564 0.8900 34 1 1.6054 -0.2617 2.1370 35 1 3.1263 -0.6443 1.2951 36 1 2.0699 -2.6550 0.3002 37 1 0.5489 -2.2723 1.1420 38 1 1.9855 -1.6595 4.2083 39 1 0.4225 -2.0012 3.4048 40 1 2.1351 -3.8888 5.1152 41 1 0.3757 -3.5589 5.2428 42 1 -0.1092 -4.7570 3.2110 43 1 1.1953 -5.7602 3.9195 44 1 3.8230 -4.8718 2.9910 45 1 4.0729 -5.3198 -0.3634 46 1 2.3064 -5.5359 -0.3978 47 1 4.3764 -7.7206 -0.9061 48 1 2.6100 -7.9360 -0.9403 49 1 3.7727 -9.6177 -4.0038 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171766541.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:38 Heat of formation + Delta-G solvation = -126.379914 kcal Electronic energy + Delta-G solvation = -25688.339517 eV Core-core repulsion = 22161.383503 eV Total energy + Delta-G solvation = -3526.956013 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.33706 -36.80515 -36.47702 -35.39043 -33.88596 -33.33245 -31.83553 -31.14858 -27.58822 -27.35356 -27.06636 -25.59439 -22.97155 -21.68859 -20.97726 -20.09510 -19.97493 -18.71062 -17.34668 -16.65461 -16.38033 -15.52481 -15.45526 -15.18356 -14.98466 -14.55798 -14.42583 -14.21038 -13.92885 -13.70676 -13.34815 -12.64415 -12.58372 -12.47619 -12.43477 -12.18526 -11.85228 -11.75156 -11.70128 -11.56809 -11.48068 -11.24050 -11.14498 -11.09143 -11.01811 -10.94561 -10.87331 -10.77376 -10.66590 -10.57103 -10.40762 -10.37966 -10.33632 -9.75810 -9.41497 -8.97980 -8.49920 -6.11975 -4.17467 0.83403 3.18772 3.26048 3.32336 3.34883 4.23070 4.30739 4.37997 4.49796 4.55809 4.69203 4.73861 4.76140 4.84907 5.14066 5.16441 5.23054 5.23841 5.32675 5.36336 5.41713 5.46952 5.48626 5.54079 5.56892 5.59740 5.64716 5.68560 5.72379 5.75917 5.78753 5.83139 5.90380 5.98400 6.01798 6.05329 6.16290 6.21187 6.27298 6.28422 6.39497 6.50941 7.17082 7.31044 7.37401 7.80936 8.18169 8.85886 9.47251 10.99115 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.009453 B = 0.004268 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2961.196898 B = 6559.274811 C = 8953.943881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.101 4.101 3 C -0.147 4.147 4 C -0.112 4.112 5 C -0.120 4.120 6 C -0.098 4.098 7 H 0.082 0.918 8 C -0.117 4.117 9 C -0.125 4.125 10 C -0.139 4.139 11 C 0.152 3.848 12 H 0.088 0.912 13 N -1.120 6.120 14 S 2.590 3.410 15 O -0.965 6.965 16 O -0.970 6.970 17 C -0.590 4.590 18 C 0.028 3.972 19 C -0.519 4.519 20 H 0.061 0.939 21 C 0.058 3.942 22 N -0.890 5.890 23 Si 0.899 3.101 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.273 1.273 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.411 0.589 45 H 0.120 0.880 46 H 0.117 0.883 47 H 0.033 0.967 48 H 0.033 0.967 49 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.647 18.832 12.656 23.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.119 4.119 3 C -0.204 4.204 4 C -0.150 4.150 5 C -0.158 4.158 6 C -0.118 4.118 7 H 0.100 0.900 8 C -0.155 4.155 9 C -0.163 4.163 10 C -0.178 4.178 11 C 0.044 3.956 12 H 0.106 0.894 13 N -0.876 5.876 14 S 2.687 3.313 15 O -0.955 6.955 16 O -0.960 6.960 17 C -0.723 4.723 18 C -0.011 4.011 19 C -0.559 4.559 20 H 0.079 0.921 21 C -0.144 4.144 22 N -0.529 5.529 23 Si 0.726 3.274 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.198 1.198 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.092 0.908 43 H 0.097 0.903 44 H 0.244 0.756 45 H 0.139 0.861 46 H 0.135 0.865 47 H 0.051 0.949 48 H 0.052 0.948 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.683 17.708 12.864 22.613 hybrid contribution 0.294 0.903 -1.260 1.578 sum -5.389 18.611 11.604 22.585 Atomic orbital electron populations 1.21894 0.95361 1.02008 1.01373 1.21151 0.95911 0.96035 0.98825 1.21837 1.00909 0.96216 1.01476 1.21641 1.00753 0.94985 0.97575 1.21829 1.01433 0.95103 0.97407 1.22163 1.00903 0.93313 0.95385 0.89961 1.22446 1.00300 0.97371 0.95409 1.22500 1.01381 0.94924 0.97451 1.22863 0.99586 0.99635 0.95722 1.21421 0.84011 0.90952 0.99185 0.89417 1.55942 1.23764 1.46215 1.61661 1.05618 0.74060 0.73596 0.77979 1.93547 1.50915 1.67769 1.83295 1.93549 1.40843 1.78726 1.82924 1.30454 1.09922 1.11836 1.20108 1.18955 0.98676 0.89281 0.94177 1.20997 1.51206 0.93966 0.89713 0.92076 1.25061 0.94932 0.94871 0.99578 1.69952 1.48832 1.01131 1.32940 0.86485 0.78341 0.78404 0.84148 1.20473 1.21004 1.19768 0.92945 0.93010 0.92214 0.91030 0.92790 0.92891 0.92930 0.91955 0.92059 0.91318 0.91250 0.91804 0.91302 0.91601 0.91703 0.90751 0.90265 0.75587 0.86142 0.86472 0.94896 0.94837 0.92537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 8.95 37.16 0.33 -0.82 16 2 C -0.10 -0.82 2.92 -90.62 -0.26 -1.08 16 3 C -0.15 -1.09 9.19 37.16 0.34 -0.75 16 4 C -0.11 -0.88 4.54 -26.73 -0.12 -1.01 16 5 C -0.12 -1.05 4.09 -26.74 -0.11 -1.16 16 6 C -0.10 -0.87 2.70 -89.50 -0.24 -1.11 16 7 H 0.08 0.72 7.75 -51.93 -0.40 0.32 16 8 C -0.12 -0.91 5.53 -25.07 -0.14 -1.05 16 9 C -0.12 -1.08 6.91 -24.74 -0.17 -1.25 16 10 C -0.14 -1.52 6.54 -25.08 -0.16 -1.68 16 11 C 0.15 1.72 2.99 -66.81 -0.20 1.52 16 12 H 0.09 1.01 6.75 -51.93 -0.35 0.66 16 13 N -1.12 -14.32 5.29 -3.94 -0.02 -14.34 16 14 S 2.59 46.21 5.38 -107.50 -0.58 45.63 16 15 O -0.97 -19.93 17.82 -57.54 -1.03 -20.95 16 16 O -0.97 -20.30 18.08 -57.54 -1.04 -21.34 16 17 C -0.59 -11.20 5.91 37.16 0.22 -10.98 16 18 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 19 C -0.52 -14.31 9.11 -34.44 -0.31 -14.62 16 20 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 21 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 22 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 23 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.48 6.56 -51.93 -0.34 0.14 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.46 7.51 -51.93 -0.39 0.07 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.58 6.43 -51.93 -0.33 0.25 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.51 7.76 -51.93 -0.40 0.10 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 43 H 0.08 1.01 8.04 -51.93 -0.42 0.59 16 44 H 0.41 4.43 8.63 -34.47 -0.30 4.13 16 45 H 0.12 2.07 8.14 -51.92 -0.42 1.64 16 46 H 0.12 1.98 7.48 -51.92 -0.39 1.59 16 47 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 48 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 49 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 395.62 15.07 5.96 5.96 Total: -1.00 -33.83 395.62 -11.26 -45.09 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -9.21 Total: 1.46 kcal Atomic # 6 Polarization: -30.82 SS G_CDS: -1.07 Total: -31.89 kcal Atomic # 7 Polarization: -40.83 SS G_CDS: 0.72 Total: -40.12 kcal Atomic # 8 Polarization: -40.23 SS G_CDS: -2.07 Total: -42.29 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 46.21 SS G_CDS: -0.58 Total: 45.63 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.83 -11.26 -45.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171766541.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.294 kcal (2) G-P(sol) polarization free energy of solvation -33.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds