Wall clock time and date at job start Tue Mar 31 2020 13:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47015 * 2 1 4 4 C 1.52999 * 109.46987 * 120.00201 * 2 1 3 5 5 C 1.52994 * 109.47351 * 64.99897 * 4 2 1 6 6 C 1.52998 * 109.47052 * 179.97438 * 5 4 2 7 7 H 1.09004 * 110.05787 * 306.41589 * 6 5 4 8 8 C 1.54268 * 110.03217 * 67.83610 * 6 5 4 9 9 C 1.54886 * 104.19537 * 142.89362 * 8 6 5 10 10 C 1.54883 * 102.75081 * 322.05726 * 9 8 6 11 11 C 1.53876 * 110.03388 * 185.00041 * 6 5 4 12 12 H 1.09003 * 110.02862 * 0.04988 * 11 6 5 13 13 N 1.46503 * 110.03371 * 121.43118 * 11 6 5 14 14 S 1.65600 * 120.00062 * 215.00446 * 13 11 6 15 15 O 1.42107 * 104.27629 * 308.92771 * 14 13 11 16 16 O 1.42102 * 104.27841 * 181.06908 * 14 13 11 17 17 C 1.81404 * 104.45074 * 64.99734 * 14 13 11 18 18 C 1.53000 * 109.46946 * 180.02562 * 17 14 13 19 19 C 1.50703 * 109.46912 * 180.02562 * 18 17 14 20 20 H 1.08001 * 119.99776 * 0.02562 * 19 18 17 21 21 C 1.37877 * 120.00001 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00114 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99955 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46828 * 90.00636 * 23 21 19 25 25 H 1.48494 * 109.47178 * 210.00332 * 23 21 19 26 26 H 1.48500 * 109.47075 * 330.00579 * 23 21 19 27 27 H 1.09003 * 109.47171 * 300.00051 * 1 2 3 28 28 H 1.08997 * 109.47314 * 59.99756 * 1 2 3 29 29 H 1.09004 * 109.47121 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46872 * 240.00364 * 2 1 3 31 31 H 1.08990 * 109.47320 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47280 * 300.00265 * 3 2 1 33 33 H 1.09003 * 109.47193 * 59.99962 * 3 2 1 34 34 H 1.09002 * 109.46973 * 304.99520 * 4 2 1 35 35 H 1.09001 * 109.46580 * 185.00493 * 4 2 1 36 36 H 1.09004 * 109.46910 * 60.00090 * 5 4 2 37 37 H 1.08999 * 109.47066 * 300.00119 * 5 4 2 38 38 H 1.08994 * 110.48440 * 261.56780 * 8 6 5 39 39 H 1.08996 * 110.48757 * 24.08086 * 8 6 5 40 40 H 1.09003 * 110.75693 * 80.37488 * 9 8 6 41 41 H 1.09001 * 110.76006 * 203.74065 * 9 8 6 42 42 H 1.09008 * 110.48998 * 279.26543 * 10 9 8 43 43 H 1.09003 * 110.48911 * 156.62152 * 10 9 8 44 44 H 0.96993 * 119.99757 * 34.99701 * 13 11 6 45 45 H 1.09002 * 109.47124 * 60.00022 * 17 14 13 46 46 H 1.09001 * 109.46975 * 300.00144 * 17 14 13 47 47 H 1.09001 * 109.47194 * 299.99756 * 18 17 14 48 48 H 1.08992 * 109.47399 * 59.99928 * 18 17 14 49 49 H 0.97000 * 120.00354 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6352 -2.1954 1.1880 6 6 2.1458 -2.9168 2.4369 7 1 3.2167 -2.7502 2.5533 8 6 1.3934 -2.4099 3.6846 9 6 1.2201 -3.6736 4.5632 10 6 0.9366 -4.7806 3.5176 11 6 1.8553 -4.4242 2.3308 12 1 1.3514 -4.6419 1.3890 13 7 3.1052 -5.1835 2.4179 14 16 3.2925 -6.5738 1.5380 15 8 2.1336 -7.3387 1.8404 16 8 4.5889 -7.0383 1.8883 17 6 3.2589 -6.0237 -0.1903 18 6 3.4242 -7.2325 -1.1135 19 6 3.3969 -6.7754 -2.5493 20 1 3.2744 -5.7275 -2.7801 21 6 3.5294 -7.6949 -3.5681 22 7 3.6791 -8.9708 -3.2870 23 14 3.4949 -7.1284 -5.3478 24 1 4.8752 -6.8083 -5.7922 25 1 2.9384 -8.2092 -6.2006 26 1 2.6436 -5.9173 -5.4654 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6766 1.9564 0.8900 34 1 1.6054 -0.2617 2.1370 35 1 3.1263 -0.6443 1.2951 36 1 2.0699 -2.6550 0.3002 37 1 0.5489 -2.2723 1.1420 38 1 1.9855 -1.6595 4.2083 39 1 0.4225 -2.0012 3.4048 40 1 2.1351 -3.8888 5.1152 41 1 0.3757 -3.5589 5.2428 42 1 -0.1092 -4.7570 3.2110 43 1 1.1953 -5.7602 3.9195 44 1 3.8230 -4.8718 2.9910 45 1 4.0729 -5.3198 -0.3634 46 1 2.3064 -5.5359 -0.3978 47 1 4.3764 -7.7206 -0.9061 48 1 2.6100 -7.9360 -0.9403 49 1 3.7727 -9.6177 -4.0038 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171766541.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:37 Heat of formation + Delta-G solvation = -147.996753 kcal Electronic energy + Delta-G solvation = -25689.276893 eV Core-core repulsion = 22161.383503 eV Total energy + Delta-G solvation = -3527.893390 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.12622 -38.12488 -37.42145 -36.98694 -35.89775 -34.32818 -33.13680 -32.51313 -28.36427 -27.98162 -27.77634 -27.59203 -23.73714 -23.54656 -21.75483 -20.93121 -20.68000 -20.05188 -19.01555 -18.19088 -17.57335 -17.01466 -16.53577 -16.52207 -16.11304 -15.96103 -15.29960 -15.03613 -14.92061 -14.58576 -14.48327 -14.34856 -13.75063 -13.69492 -13.25917 -13.18624 -13.14579 -13.09713 -12.94086 -12.91902 -12.78590 -12.55185 -12.36012 -12.26544 -12.14524 -12.11669 -11.86742 -11.77294 -11.71717 -11.57704 -11.45300 -11.38009 -11.24426 -11.08601 -11.01342 -10.64770 -10.24108 -8.25989 -6.39958 -0.66236 1.40553 1.42333 1.53394 1.87380 2.37839 2.80870 3.07577 3.27583 3.54715 3.73167 3.84335 4.01828 4.04132 4.09226 4.13229 4.17649 4.36725 4.44463 4.51860 4.61001 4.65920 4.72543 4.76541 4.80731 4.84148 4.86532 4.91916 4.97775 5.03281 5.09808 5.13718 5.17680 5.26140 5.26638 5.27559 5.32227 5.38286 5.41046 5.45732 5.49330 5.55180 5.64493 5.67847 5.68697 6.06112 6.19452 6.73602 7.30260 8.86420 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.009453 B = 0.004268 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2961.196898 B = 6559.274811 C = 8953.943881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.103 4.103 3 C -0.146 4.146 4 C -0.107 4.107 5 C -0.120 4.120 6 C -0.091 4.091 7 H 0.089 0.911 8 C -0.110 4.110 9 C -0.121 4.121 10 C -0.145 4.145 11 C 0.140 3.860 12 H 0.084 0.916 13 N -1.099 6.099 14 S 2.616 3.384 15 O -0.995 6.995 16 O -1.002 7.002 17 C -0.587 4.587 18 C 0.021 3.979 19 C -0.537 4.537 20 H 0.076 0.924 21 C -0.003 4.003 22 N -0.935 5.935 23 Si 0.973 3.027 24 H -0.271 1.271 25 H -0.283 1.283 26 H -0.257 1.257 27 H 0.060 0.940 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.056 0.944 44 H 0.424 0.576 45 H 0.142 0.858 46 H 0.140 0.860 47 H 0.005 0.995 48 H 0.007 0.993 49 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.176 21.830 12.925 26.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.121 4.121 3 C -0.203 4.203 4 C -0.144 4.144 5 C -0.158 4.158 6 C -0.111 4.111 7 H 0.107 0.893 8 C -0.148 4.148 9 C -0.158 4.158 10 C -0.184 4.184 11 C 0.033 3.967 12 H 0.102 0.898 13 N -0.860 5.860 14 S 2.713 3.287 15 O -0.985 6.985 16 O -0.993 6.993 17 C -0.719 4.719 18 C -0.018 4.018 19 C -0.576 4.576 20 H 0.094 0.906 21 C -0.201 4.201 22 N -0.574 5.574 23 Si 0.796 3.204 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.181 1.181 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.085 0.915 41 H 0.095 0.905 42 H 0.099 0.901 43 H 0.075 0.925 44 H 0.260 0.740 45 H 0.160 0.840 46 H 0.158 0.842 47 H 0.023 0.977 48 H 0.025 0.975 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.205 20.721 13.137 25.307 hybrid contribution 0.425 -0.018 -1.274 1.343 sum -5.780 20.703 11.863 24.551 Atomic orbital electron populations 1.21889 0.95067 1.01853 1.01769 1.21157 0.96185 0.96402 0.98404 1.21824 1.00864 0.95749 1.01873 1.21593 1.00745 0.94214 0.97851 1.21830 1.01631 0.95648 0.96695 1.22128 1.01581 0.91172 0.96231 0.89318 1.22426 1.00825 0.97133 0.94423 1.22491 1.01929 0.94304 0.97099 1.22895 0.99814 0.99438 0.96275 1.21751 0.83105 0.92456 0.99421 0.89781 1.55437 1.24983 1.44966 1.60572 1.04559 0.72653 0.74080 0.77455 1.93508 1.51940 1.69474 1.83557 1.93497 1.42392 1.80117 1.83263 1.30338 1.12081 1.09587 1.19936 1.18814 0.96181 0.91323 0.95504 1.21501 1.50588 0.94757 0.90773 0.90623 1.26103 0.94392 0.94853 1.04792 1.70101 1.50149 1.02615 1.34564 0.85332 0.78830 0.78325 0.77895 1.19617 1.20842 1.18101 0.92059 0.93149 0.92626 0.92469 0.92862 0.92922 0.92134 0.90781 0.92136 0.92617 0.90865 0.90268 0.90448 0.91538 0.90517 0.90104 0.92505 0.73957 0.84000 0.84231 0.97686 0.97516 0.92405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 8.95 71.98 0.64 -1.37 16 2 C -0.10 -1.48 2.92 -10.79 -0.03 -1.52 16 3 C -0.15 -1.87 9.19 71.98 0.66 -1.21 16 4 C -0.11 -1.41 4.54 30.59 0.14 -1.27 16 5 C -0.12 -1.84 4.09 30.59 0.13 -1.72 16 6 C -0.09 -1.39 2.70 -10.07 -0.03 -1.42 16 7 H 0.09 1.28 7.75 -2.39 -0.02 1.26 16 8 C -0.11 -1.34 5.53 31.67 0.18 -1.17 16 9 C -0.12 -1.78 6.91 31.88 0.22 -1.56 16 10 C -0.14 -2.97 6.54 31.67 0.21 -2.77 16 11 C 0.14 2.94 2.99 45.71 0.14 3.08 16 12 H 0.08 1.84 6.75 -2.39 -0.02 1.82 16 13 N -1.10 -26.87 5.29 -166.37 -0.88 -27.75 16 14 S 2.62 94.08 5.38 -56.49 -0.30 93.77 16 15 O -1.00 -41.94 17.82 -127.65 -2.27 -44.21 16 16 O -1.00 -42.57 18.08 -127.65 -2.31 -44.88 16 17 C -0.59 -22.24 5.91 71.98 0.43 -21.81 16 18 C 0.02 1.09 4.98 29.85 0.15 1.24 16 19 C -0.54 -29.80 9.11 25.60 0.23 -29.57 16 20 H 0.08 3.86 7.74 -2.91 -0.02 3.84 16 21 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 22 N -0.93 -57.15 13.29 21.45 0.28 -56.86 16 23 Si 0.97 43.29 29.54 68.60 2.03 45.32 16 24 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 25 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 26 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 27 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.05 0.79 6.56 -2.39 -0.02 0.78 16 30 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.07 0.82 7.51 -2.39 -0.02 0.81 16 35 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.07 1.07 6.43 -2.39 -0.02 1.05 16 38 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.08 0.85 7.76 -2.39 -0.02 0.83 16 40 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 43 H 0.06 1.42 8.04 -2.39 -0.02 1.41 16 44 H 0.42 8.44 8.63 -96.75 -0.83 7.60 16 45 H 0.14 4.72 8.14 -2.39 -0.02 4.70 16 46 H 0.14 4.60 7.48 -2.39 -0.02 4.58 16 47 H 0.00 0.28 8.14 -2.39 -0.02 0.26 16 48 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 49 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -74.10 395.62 0.13 -73.97 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: 0.06 Total: 21.41 kcal Atomic # 6 Polarization: -64.29 SS G_CDS: 3.52 Total: -60.77 kcal Atomic # 7 Polarization: -84.02 SS G_CDS: -0.59 Total: -84.61 kcal Atomic # 8 Polarization: -84.51 SS G_CDS: -4.58 Total: -89.09 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 16 Polarization: 94.08 SS G_CDS: -0.30 Total: 93.77 kcal Total: -74.10 0.13 -73.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171766541.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.028 kcal (2) G-P(sol) polarization free energy of solvation -74.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds