Wall clock time and date at job start Tue Mar 31 2020 13:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47255 * 2 1 4 4 C 1.53002 * 109.47039 * 119.99837 * 2 1 3 5 5 C 1.53003 * 109.47166 * 174.99717 * 4 2 1 6 6 C 1.52994 * 109.47152 * 180.02562 * 5 4 2 7 7 H 1.08999 * 110.54017 * 52.38948 * 6 5 4 8 8 C 1.54888 * 110.48770 * 289.77771 * 6 5 4 9 9 C 1.54891 * 102.75120 * 203.38058 * 8 6 5 10 10 C 1.54267 * 104.19324 * 37.94011 * 9 8 6 11 11 C 1.53876 * 106.59870 * 336.39035 * 10 9 8 12 12 H 1.08998 * 110.02768 * 119.28860 * 11 10 9 13 13 N 1.46503 * 110.03171 * 240.66457 * 11 10 9 14 14 S 1.65599 * 120.00260 * 263.54929 * 13 11 10 15 15 O 1.42098 * 104.27746 * 181.07326 * 14 13 11 16 16 O 1.42107 * 104.27369 * 308.93026 * 14 13 11 17 17 C 1.81393 * 104.44960 * 64.99985 * 14 13 11 18 18 C 1.53005 * 109.47203 * 180.02562 * 17 14 13 19 19 C 1.50698 * 109.47025 * 180.02562 * 18 17 14 20 20 H 1.07995 * 120.00351 * 359.97438 * 19 18 17 21 21 C 1.37875 * 119.99804 * 179.97438 * 19 18 17 22 22 N 1.31518 * 120.00313 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00180 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46971 * 60.00243 * 23 21 19 25 25 H 1.48500 * 109.47454 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47338 * 300.00069 * 23 21 19 27 27 H 1.09010 * 109.46962 * 300.00336 * 1 2 3 28 28 H 1.09000 * 109.47263 * 59.99843 * 1 2 3 29 29 H 1.08996 * 109.47698 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47028 * 240.00002 * 2 1 3 31 31 H 1.09000 * 109.47486 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47113 * 300.00249 * 3 2 1 33 33 H 1.09010 * 109.47410 * 59.99939 * 3 2 1 34 34 H 1.09004 * 109.46780 * 55.00273 * 4 2 1 35 35 H 1.08992 * 109.47429 * 295.00168 * 4 2 1 36 36 H 1.09002 * 109.46687 * 60.00053 * 5 4 2 37 37 H 1.08999 * 109.47009 * 300.00722 * 5 4 2 38 38 H 1.09005 * 110.75648 * 321.69288 * 8 6 5 39 39 H 1.09004 * 110.75897 * 84.87739 * 8 6 5 40 40 H 1.09004 * 110.48613 * 279.26383 * 9 8 6 41 41 H 1.08994 * 110.48745 * 156.61801 * 9 8 6 42 42 H 1.08995 * 110.03032 * 217.10762 * 10 9 8 43 43 H 1.08998 * 110.03405 * 95.67701 * 10 9 8 44 44 H 0.96998 * 119.99391 * 83.55263 * 13 11 10 45 45 H 1.09006 * 109.47291 * 300.00184 * 17 14 13 46 46 H 1.09005 * 109.47383 * 59.99950 * 17 14 13 47 47 H 1.08999 * 109.46393 * 299.99728 * 18 17 14 48 48 H 1.08999 * 109.47239 * 59.99985 * 18 17 14 49 49 H 0.96996 * 120.00199 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.8311 1.1880 6 6 4.0747 -1.5529 2.4369 7 1 3.5507 -2.4989 2.5727 8 6 3.9066 -0.6556 3.6882 9 6 4.9656 -1.2270 4.6634 10 6 6.1629 -1.5803 3.7570 11 6 5.5964 -1.7875 2.3414 12 1 6.0423 -1.0704 1.6522 13 7 5.8670 -3.1540 1.8877 14 16 7.1842 -3.4640 0.9331 15 8 7.1100 -4.8595 0.6759 16 8 7.0824 -2.5179 -0.1224 17 6 8.6086 -3.0865 1.9909 18 6 9.9022 -3.3360 1.2126 19 6 11.0855 -3.0230 2.0917 20 1 10.9306 -2.6801 3.1039 21 6 12.3660 -3.1745 1.6035 22 7 12.5548 -3.5926 0.3709 23 14 13.8330 -2.7872 2.6933 24 1 13.8014 -3.6600 3.8944 25 1 15.0884 -3.0304 1.9383 26 1 13.7754 -1.3641 3.1137 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6054 -1.7198 1.2951 35 1 1.7516 -0.1584 2.1370 36 1 3.9994 0.1675 1.1421 37 1 3.8532 -1.3940 0.3002 38 1 4.1236 0.3855 3.4490 39 1 2.9030 -0.7541 4.1022 40 1 4.5854 -2.1205 5.1588 41 1 5.2524 -0.4750 5.3984 42 1 6.6382 -2.4967 4.1068 43 1 6.8836 -0.7627 3.7548 44 1 5.2745 -3.8771 2.1464 45 1 8.5660 -2.0417 2.2987 46 1 8.5858 -3.7264 2.8731 47 1 9.9450 -4.3806 0.9046 48 1 9.9248 -2.6958 0.3307 49 1 13.4557 -3.6988 0.0274 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171766543.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:43 Heat of formation + Delta-G solvation = -127.277036 kcal Electronic energy + Delta-G solvation = -25481.374010 eV Core-core repulsion = 21954.379095 eV Total energy + Delta-G solvation = -3526.994915 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.27685 -36.81269 -36.50153 -35.40283 -33.88535 -33.42027 -31.91878 -31.14040 -27.56469 -27.34067 -27.02292 -25.57315 -23.00711 -21.75135 -20.71888 -20.31429 -19.93840 -18.81543 -17.37538 -16.67849 -16.33584 -15.55009 -15.50026 -15.18241 -14.97201 -14.55766 -14.28913 -14.12554 -13.87867 -13.76704 -13.34351 -12.85651 -12.59282 -12.50296 -12.37253 -12.35363 -11.87772 -11.76352 -11.69983 -11.55835 -11.48989 -11.35751 -11.20848 -11.06263 -11.00672 -10.94159 -10.87816 -10.70201 -10.63288 -10.51836 -10.41995 -10.37464 -10.35779 -9.76853 -9.42087 -8.98300 -8.49446 -6.11657 -4.17231 0.83711 3.18794 3.27225 3.32121 3.33834 4.22917 4.30585 4.39113 4.44337 4.55288 4.67712 4.74545 4.77045 4.80397 5.12422 5.21002 5.23396 5.24713 5.31479 5.37470 5.40324 5.41828 5.44396 5.52510 5.54183 5.58417 5.63676 5.69878 5.71989 5.74314 5.76729 5.84604 5.89193 5.95720 6.00852 6.04109 6.10626 6.16579 6.24766 6.30739 6.41460 6.51167 7.16939 7.31274 7.37834 7.81116 8.18529 8.85979 9.47354 10.99400 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019058 B = 0.002920 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.825895 B = 9585.536343 C =10009.589455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.101 4.101 3 C -0.149 4.149 4 C -0.112 4.112 5 C -0.118 4.118 6 C -0.091 4.091 7 H 0.081 0.919 8 C -0.119 4.119 9 C -0.121 4.121 10 C -0.152 4.152 11 C 0.147 3.853 12 H 0.096 0.904 13 N -1.120 6.120 14 S 2.590 3.410 15 O -0.970 6.970 16 O -0.967 6.967 17 C -0.589 4.589 18 C 0.028 3.972 19 C -0.520 4.520 20 H 0.061 0.939 21 C 0.058 3.942 22 N -0.891 5.891 23 Si 0.900 3.100 24 H -0.276 1.276 25 H -0.285 1.285 26 H -0.275 1.275 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.411 0.589 45 H 0.118 0.882 46 H 0.120 0.880 47 H 0.033 0.967 48 H 0.033 0.967 49 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.546 7.667 6.125 24.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 C -0.207 4.207 4 C -0.150 4.150 5 C -0.156 4.156 6 C -0.111 4.111 7 H 0.099 0.901 8 C -0.157 4.157 9 C -0.159 4.159 10 C -0.192 4.192 11 C 0.039 3.961 12 H 0.114 0.886 13 N -0.876 5.876 14 S 2.687 3.313 15 O -0.960 6.960 16 O -0.957 6.957 17 C -0.723 4.723 18 C -0.011 4.011 19 C -0.559 4.559 20 H 0.079 0.921 21 C -0.145 4.145 22 N -0.529 5.529 23 Si 0.727 3.273 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.201 1.201 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.096 0.904 43 H 0.093 0.907 44 H 0.244 0.756 45 H 0.137 0.863 46 H 0.138 0.862 47 H 0.051 0.949 48 H 0.051 0.949 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -22.353 7.458 4.998 24.089 hybrid contribution 0.891 0.044 1.301 1.578 sum -21.462 7.502 6.300 23.592 Atomic orbital electron populations 1.21841 0.95549 1.01518 1.01501 1.21147 0.95377 0.96571 0.98801 1.21895 1.01543 0.95853 1.01371 1.21649 0.95527 1.00236 0.97551 1.21744 0.95260 1.00907 0.97678 1.22257 0.94303 0.99351 0.95170 0.90084 1.22566 0.98888 0.99249 0.94965 1.22305 0.95447 1.00647 0.97520 1.22846 0.98396 1.02897 0.95015 1.21527 0.96247 0.82915 0.95436 0.88592 1.55904 1.44897 1.14721 1.72048 1.05594 0.75761 0.74123 0.75790 1.93548 1.86097 1.32098 1.84302 1.93539 1.85665 1.64106 1.52399 1.30489 1.16629 1.10556 1.14585 1.18952 0.88270 0.98481 0.95350 1.20961 0.90019 1.45991 0.98957 0.92112 1.25068 0.99229 0.94981 0.95217 1.69945 1.22292 1.45648 1.15003 0.86536 0.81497 0.78903 0.80358 1.20100 1.21083 1.20084 0.92885 0.92912 0.92855 0.91169 0.92138 0.93038 0.92894 0.92198 0.91959 0.91302 0.91299 0.91132 0.91498 0.91659 0.91611 0.90406 0.90689 0.75570 0.86321 0.86170 0.94918 0.94871 0.92478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.19 37.16 0.34 -0.68 16 2 C -0.10 -0.80 2.92 -90.62 -0.26 -1.06 16 3 C -0.15 -1.15 8.95 37.16 0.33 -0.82 16 4 C -0.11 -0.89 4.56 -26.73 -0.12 -1.01 16 5 C -0.12 -1.11 4.32 -26.73 -0.12 -1.23 16 6 C -0.09 -0.83 2.56 -88.97 -0.23 -1.06 16 7 H 0.08 0.71 7.82 -51.93 -0.41 0.30 16 8 C -0.12 -0.92 5.67 -24.74 -0.14 -1.06 16 9 C -0.12 -1.00 6.83 -25.07 -0.17 -1.17 16 10 C -0.15 -1.55 6.22 -25.61 -0.16 -1.71 16 11 C 0.15 1.66 3.04 -66.81 -0.20 1.46 16 12 H 0.10 1.19 7.22 -51.93 -0.37 0.81 16 13 N -1.12 -14.33 5.29 -3.94 -0.02 -14.35 16 14 S 2.59 46.42 5.44 -107.50 -0.58 45.83 16 15 O -0.97 -20.37 18.08 -57.54 -1.04 -21.41 16 16 O -0.97 -20.06 17.41 -57.54 -1.00 -21.07 16 17 C -0.59 -11.22 5.86 37.16 0.22 -11.00 16 18 C 0.03 0.73 4.98 -27.88 -0.14 0.59 16 19 C -0.52 -14.35 9.11 -34.44 -0.31 -14.67 16 20 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 21 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 22 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 23 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 H 0.05 0.34 8.14 -51.92 -0.42 -0.08 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.50 6.56 -51.93 -0.34 0.16 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.45 7.55 -51.93 -0.39 0.06 16 36 H 0.07 0.64 6.44 -51.93 -0.33 0.30 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.53 7.97 -51.93 -0.41 0.12 16 39 H 0.07 0.45 8.05 -51.93 -0.42 0.04 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.08 0.81 7.92 -51.93 -0.41 0.40 16 43 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.41 4.42 8.58 -34.47 -0.30 4.12 16 45 H 0.12 2.02 7.91 -51.92 -0.41 1.61 16 46 H 0.12 2.06 8.14 -51.92 -0.42 1.64 16 47 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 48 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 49 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 396.08 15.07 5.97 5.97 Total: -1.00 -33.88 396.08 -11.28 -45.16 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -9.26 Total: 1.41 kcal Atomic # 6 Polarization: -30.83 SS G_CDS: -1.06 Total: -31.89 kcal Atomic # 7 Polarization: -40.92 SS G_CDS: 0.72 Total: -40.20 kcal Atomic # 8 Polarization: -40.43 SS G_CDS: -2.04 Total: -42.47 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 46.42 SS G_CDS: -0.58 Total: 45.83 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.88 -11.28 -45.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171766543.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.120 kcal (2) G-P(sol) polarization free energy of solvation -33.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds