Wall clock time and date at job start Tue Mar 31 2020 13:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47255 * 2 1 4 4 C 1.53002 * 109.47039 * 119.99837 * 2 1 3 5 5 C 1.53003 * 109.47166 * 174.99717 * 4 2 1 6 6 C 1.52994 * 109.47152 * 180.02562 * 5 4 2 7 7 H 1.08999 * 110.54017 * 52.38948 * 6 5 4 8 8 C 1.54888 * 110.48770 * 289.77771 * 6 5 4 9 9 C 1.54891 * 102.75120 * 203.38058 * 8 6 5 10 10 C 1.54267 * 104.19324 * 37.94011 * 9 8 6 11 11 C 1.53876 * 106.59870 * 336.39035 * 10 9 8 12 12 H 1.08998 * 110.02768 * 119.28860 * 11 10 9 13 13 N 1.46503 * 110.03171 * 240.66457 * 11 10 9 14 14 S 1.65599 * 120.00260 * 263.54929 * 13 11 10 15 15 O 1.42098 * 104.27746 * 181.07326 * 14 13 11 16 16 O 1.42107 * 104.27369 * 308.93026 * 14 13 11 17 17 C 1.81393 * 104.44960 * 64.99985 * 14 13 11 18 18 C 1.53005 * 109.47203 * 180.02562 * 17 14 13 19 19 C 1.50698 * 109.47025 * 180.02562 * 18 17 14 20 20 H 1.07995 * 120.00351 * 359.97438 * 19 18 17 21 21 C 1.37875 * 119.99804 * 179.97438 * 19 18 17 22 22 N 1.31518 * 120.00313 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00180 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46971 * 60.00243 * 23 21 19 25 25 H 1.48500 * 109.47454 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47338 * 300.00069 * 23 21 19 27 27 H 1.09010 * 109.46962 * 300.00336 * 1 2 3 28 28 H 1.09000 * 109.47263 * 59.99843 * 1 2 3 29 29 H 1.08996 * 109.47698 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47028 * 240.00002 * 2 1 3 31 31 H 1.09000 * 109.47486 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47113 * 300.00249 * 3 2 1 33 33 H 1.09010 * 109.47410 * 59.99939 * 3 2 1 34 34 H 1.09004 * 109.46780 * 55.00273 * 4 2 1 35 35 H 1.08992 * 109.47429 * 295.00168 * 4 2 1 36 36 H 1.09002 * 109.46687 * 60.00053 * 5 4 2 37 37 H 1.08999 * 109.47009 * 300.00722 * 5 4 2 38 38 H 1.09005 * 110.75648 * 321.69288 * 8 6 5 39 39 H 1.09004 * 110.75897 * 84.87739 * 8 6 5 40 40 H 1.09004 * 110.48613 * 279.26383 * 9 8 6 41 41 H 1.08994 * 110.48745 * 156.61801 * 9 8 6 42 42 H 1.08995 * 110.03032 * 217.10762 * 10 9 8 43 43 H 1.08998 * 110.03405 * 95.67701 * 10 9 8 44 44 H 0.96998 * 119.99391 * 83.55263 * 13 11 10 45 45 H 1.09006 * 109.47291 * 300.00184 * 17 14 13 46 46 H 1.09005 * 109.47383 * 59.99950 * 17 14 13 47 47 H 1.08999 * 109.46393 * 299.99728 * 18 17 14 48 48 H 1.08999 * 109.47239 * 59.99985 * 18 17 14 49 49 H 0.96996 * 120.00199 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.8311 1.1880 6 6 4.0747 -1.5529 2.4369 7 1 3.5507 -2.4989 2.5727 8 6 3.9066 -0.6556 3.6882 9 6 4.9656 -1.2270 4.6634 10 6 6.1629 -1.5803 3.7570 11 6 5.5964 -1.7875 2.3414 12 1 6.0423 -1.0704 1.6522 13 7 5.8670 -3.1540 1.8877 14 16 7.1842 -3.4640 0.9331 15 8 7.1100 -4.8595 0.6759 16 8 7.0824 -2.5179 -0.1224 17 6 8.6086 -3.0865 1.9909 18 6 9.9022 -3.3360 1.2126 19 6 11.0855 -3.0230 2.0917 20 1 10.9306 -2.6801 3.1039 21 6 12.3660 -3.1745 1.6035 22 7 12.5548 -3.5926 0.3709 23 14 13.8330 -2.7872 2.6933 24 1 13.8014 -3.6600 3.8944 25 1 15.0884 -3.0304 1.9383 26 1 13.7754 -1.3641 3.1137 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6054 -1.7198 1.2951 35 1 1.7516 -0.1584 2.1370 36 1 3.9994 0.1675 1.1421 37 1 3.8532 -1.3940 0.3002 38 1 4.1236 0.3855 3.4490 39 1 2.9030 -0.7541 4.1022 40 1 4.5854 -2.1205 5.1588 41 1 5.2524 -0.4750 5.3984 42 1 6.6382 -2.4967 4.1068 43 1 6.8836 -0.7627 3.7548 44 1 5.2745 -3.8771 2.1464 45 1 8.5660 -2.0417 2.2987 46 1 8.5858 -3.7264 2.8731 47 1 9.9450 -4.3806 0.9046 48 1 9.9248 -2.6958 0.3307 49 1 13.4557 -3.6988 0.0274 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171766543.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:42 Heat of formation + Delta-G solvation = -148.921221 kcal Electronic energy + Delta-G solvation = -25482.312572 eV Core-core repulsion = 21954.379095 eV Total energy + Delta-G solvation = -3527.933478 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.06854 -38.13947 -37.45286 -37.01412 -35.89990 -34.41893 -33.15389 -32.57871 -28.29966 -27.97387 -27.80570 -27.53820 -23.75183 -23.59753 -21.50428 -21.16403 -20.66281 -20.16040 -19.05095 -18.17936 -17.62571 -17.03168 -16.52979 -16.51411 -16.09594 -16.02258 -15.21755 -14.96560 -14.80358 -14.58293 -14.47555 -14.42045 -13.86308 -13.72498 -13.39319 -13.21245 -13.12364 -13.09618 -12.97380 -12.90656 -12.81194 -12.65568 -12.37623 -12.24073 -12.22532 -12.16706 -11.87139 -11.72930 -11.71013 -11.56915 -11.37012 -11.32608 -11.27384 -11.15629 -11.05754 -10.64129 -10.23824 -8.25990 -6.40148 -0.66687 1.40421 1.44021 1.52140 1.86800 2.37875 2.80450 3.07293 3.26303 3.51377 3.70887 3.85730 4.01085 4.04794 4.08729 4.13115 4.14620 4.38818 4.42122 4.53447 4.62211 4.64958 4.66825 4.74386 4.77226 4.81835 4.87572 4.88735 4.93798 5.02913 5.06961 5.12675 5.16323 5.25383 5.26496 5.27497 5.31613 5.35973 5.37812 5.43908 5.49376 5.56193 5.61389 5.65466 5.68124 6.05954 6.19160 6.73412 7.29985 8.86234 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019058 B = 0.002920 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.825895 B = 9585.536343 C =10009.589455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.104 4.104 3 C -0.149 4.149 4 C -0.106 4.106 5 C -0.119 4.119 6 C -0.087 4.087 7 H 0.090 0.910 8 C -0.112 4.112 9 C -0.117 4.117 10 C -0.157 4.157 11 C 0.135 3.865 12 H 0.082 0.918 13 N -1.099 6.099 14 S 2.614 3.386 15 O -1.002 7.002 16 O -0.998 6.998 17 C -0.586 4.586 18 C 0.021 3.979 19 C -0.538 4.538 20 H 0.077 0.923 21 C -0.005 4.005 22 N -0.935 5.935 23 Si 0.974 3.026 24 H -0.263 1.263 25 H -0.285 1.285 26 H -0.262 1.262 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.043 0.957 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.424 0.576 45 H 0.140 0.860 46 H 0.143 0.857 47 H 0.004 0.996 48 H 0.005 0.995 49 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.863 8.735 8.950 26.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.122 4.122 3 C -0.206 4.206 4 C -0.143 4.143 5 C -0.156 4.156 6 C -0.107 4.107 7 H 0.108 0.892 8 C -0.150 4.150 9 C -0.154 4.154 10 C -0.196 4.196 11 C 0.028 3.972 12 H 0.100 0.900 13 N -0.860 5.860 14 S 2.711 3.289 15 O -0.993 6.993 16 O -0.988 6.988 17 C -0.718 4.718 18 C -0.018 4.018 19 C -0.577 4.577 20 H 0.095 0.905 21 C -0.203 4.203 22 N -0.575 5.575 23 Si 0.797 3.203 24 H -0.188 1.188 25 H -0.210 1.210 26 H -0.187 1.187 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.062 0.938 38 H 0.092 0.908 39 H 0.103 0.897 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.093 0.907 44 H 0.261 0.739 45 H 0.159 0.841 46 H 0.161 0.839 47 H 0.023 0.977 48 H 0.024 0.976 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -23.680 8.522 7.837 26.359 hybrid contribution 1.226 -0.270 0.390 1.314 sum -22.454 8.251 8.227 25.297 Atomic orbital electron populations 1.21813 0.94553 1.01766 1.01997 1.21167 0.96230 0.96564 0.98285 1.21886 1.00937 0.95827 1.01930 1.21599 0.94135 1.00563 0.98004 1.21730 0.96557 1.00482 0.96841 1.22260 0.92385 1.00191 0.95843 0.89205 1.22549 0.99763 0.98900 0.93745 1.22298 0.94482 1.01334 0.97335 1.22881 0.99407 1.02950 0.94360 1.21819 0.98169 0.81209 0.95971 0.90010 1.55399 1.43011 1.16159 1.71387 1.04561 0.76053 0.72740 0.75538 1.93496 1.86740 1.33973 1.85057 1.93500 1.86263 1.64818 1.54217 1.30374 1.14090 1.12571 1.14743 1.18810 0.91579 0.96130 0.95247 1.21481 0.90871 1.45496 0.99830 0.90515 1.26134 1.02846 0.94694 0.96644 1.70100 1.23087 1.47112 1.17200 0.85365 0.77083 0.79389 0.78422 1.18752 1.21040 1.18670 0.92040 0.92781 0.92739 0.92712 0.93072 0.92931 0.91903 0.92019 0.90553 0.91391 0.93819 0.90849 0.89726 0.90870 0.90624 0.90484 0.90679 0.73898 0.84145 0.83897 0.97723 0.97630 0.92400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.19 71.98 0.66 -1.12 16 2 C -0.10 -1.55 2.92 -10.79 -0.03 -1.59 16 3 C -0.15 -2.14 8.95 71.98 0.64 -1.50 16 4 C -0.11 -1.49 4.56 30.60 0.14 -1.35 16 5 C -0.12 -2.12 4.32 30.59 0.13 -1.99 16 6 C -0.09 -1.41 2.56 -9.72 -0.02 -1.44 16 7 H 0.09 1.33 7.82 -2.39 -0.02 1.31 16 8 C -0.11 -1.37 5.67 31.89 0.18 -1.19 16 9 C -0.12 -1.55 6.83 31.67 0.22 -1.33 16 10 C -0.16 -2.83 6.22 31.32 0.19 -2.64 16 11 C 0.14 2.88 3.04 45.71 0.14 3.02 16 12 H 0.08 2.00 7.22 -2.39 -0.02 1.98 16 13 N -1.10 -27.09 5.29 -166.37 -0.88 -27.97 16 14 S 2.61 94.93 5.44 -56.49 -0.31 94.63 16 15 O -1.00 -42.84 18.08 -127.65 -2.31 -45.15 16 16 O -1.00 -42.66 17.41 -127.65 -2.22 -44.88 16 17 C -0.59 -22.23 5.86 71.98 0.42 -21.81 16 18 C 0.02 1.12 4.98 29.85 0.15 1.27 16 19 C -0.54 -29.85 9.11 25.60 0.23 -29.62 16 20 H 0.08 3.90 7.74 -2.91 -0.02 3.88 16 21 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 22 N -0.94 -57.37 13.29 21.45 0.28 -57.09 16 23 Si 0.97 43.31 29.54 68.60 2.03 45.33 16 24 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 25 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 26 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 27 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 28 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.05 0.82 6.56 -2.39 -0.02 0.80 16 32 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 34 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 35 H 0.08 0.88 7.55 -2.39 -0.02 0.87 16 36 H 0.07 1.21 6.44 -2.39 -0.02 1.20 16 37 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.07 0.89 7.97 -2.38 -0.02 0.87 16 39 H 0.08 0.80 8.05 -2.38 -0.02 0.78 16 40 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 41 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.08 1.41 7.92 -2.39 -0.02 1.39 16 43 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.42 8.47 8.58 -96.75 -0.83 7.64 16 45 H 0.14 4.66 7.91 -2.39 -0.02 4.64 16 46 H 0.14 4.73 8.14 -2.39 -0.02 4.71 16 47 H 0.00 0.25 8.14 -2.39 -0.02 0.24 16 48 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 49 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -74.53 396.08 0.18 -74.35 By element: Atomic # 1 Polarization: 21.80 SS G_CDS: 0.06 Total: 21.87 kcal Atomic # 6 Polarization: -64.61 SS G_CDS: 3.52 Total: -61.09 kcal Atomic # 7 Polarization: -84.46 SS G_CDS: -0.59 Total: -85.06 kcal Atomic # 8 Polarization: -85.50 SS G_CDS: -4.53 Total: -90.03 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.33 kcal Atomic # 16 Polarization: 94.93 SS G_CDS: -0.31 Total: 94.63 kcal Total: -74.53 0.18 -74.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171766543.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.571 kcal (2) G-P(sol) polarization free energy of solvation -74.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds