Wall clock time and date at job start Tue Mar 31 2020 13:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.47177 * 2 1 4 4 C 1.52995 * 109.47265 * 119.99781 * 2 1 3 5 5 C 1.53003 * 109.47179 * 174.99992 * 4 2 1 6 6 C 1.53000 * 109.47057 * 180.02562 * 5 4 2 7 7 H 1.08994 * 110.01879 * 306.39064 * 6 5 4 8 8 C 1.54270 * 110.03293 * 67.83448 * 6 5 4 9 9 C 1.54892 * 104.19553 * 142.89284 * 8 6 5 10 10 C 1.54893 * 102.75021 * 322.06135 * 9 8 6 11 11 C 1.53879 * 110.03209 * 184.99947 * 6 5 4 12 12 H 1.09003 * 110.02945 * 121.37917 * 11 6 5 13 13 N 1.46499 * 110.03313 * 0.02562 * 11 6 5 14 14 S 1.65594 * 120.00303 * 144.99838 * 13 11 6 15 15 O 1.42102 * 104.27534 * 308.92610 * 14 13 11 16 16 O 1.42108 * 104.27870 * 181.07054 * 14 13 11 17 17 C 1.81391 * 104.45143 * 64.99767 * 14 13 11 18 18 C 1.53004 * 109.47414 * 179.97438 * 17 14 13 19 19 C 1.50700 * 109.47208 * 179.97438 * 18 17 14 20 20 H 1.08002 * 119.99770 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00083 * 180.02562 * 19 18 17 22 22 N 1.31514 * 120.00147 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00278 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46986 * 270.00126 * 23 21 19 25 25 H 1.48496 * 109.47029 * 30.00143 * 23 21 19 26 26 H 1.48499 * 109.47352 * 149.99973 * 23 21 19 27 27 H 1.09000 * 109.47068 * 299.99776 * 1 2 3 28 28 H 1.08997 * 109.47057 * 59.99941 * 1 2 3 29 29 H 1.09005 * 109.46694 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47556 * 240.00074 * 2 1 3 31 31 H 1.08998 * 109.47132 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.46997 * 300.00404 * 3 2 1 33 33 H 1.09003 * 109.46818 * 59.99622 * 3 2 1 34 34 H 1.09003 * 109.46912 * 55.00791 * 4 2 1 35 35 H 1.08994 * 109.47919 * 295.00298 * 4 2 1 36 36 H 1.08995 * 109.47144 * 60.00732 * 5 4 2 37 37 H 1.09000 * 109.47291 * 300.00281 * 5 4 2 38 38 H 1.08993 * 110.48692 * 261.57249 * 8 6 5 39 39 H 1.08997 * 110.48277 * 24.08798 * 8 6 5 40 40 H 1.08998 * 110.75404 * 80.37210 * 9 8 6 41 41 H 1.08994 * 110.75665 * 203.55643 * 9 8 6 42 42 H 1.09001 * 110.48066 * 279.26377 * 10 9 8 43 43 H 1.09000 * 110.48587 * 156.62129 * 10 9 8 44 44 H 0.97006 * 119.99926 * 324.99541 * 13 11 6 45 45 H 1.09000 * 109.47478 * 59.99882 * 17 14 13 46 46 H 1.08998 * 109.47401 * 300.00003 * 17 14 13 47 47 H 1.08994 * 109.47074 * 60.00211 * 18 17 14 48 48 H 1.08998 * 109.47285 * 300.00046 * 18 17 14 49 49 H 0.97005 * 119.99661 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.8310 1.1879 6 6 4.0748 -1.5527 2.4369 7 1 3.6962 -1.0608 3.3328 8 6 3.6271 -3.0288 2.4140 9 6 4.8283 -3.7995 3.0159 10 6 6.0471 -3.0406 2.4347 11 6 5.6135 -1.5603 2.4500 12 1 5.9816 -1.0719 3.3523 13 7 6.1289 -0.8736 1.2629 14 16 7.5197 0.0196 1.3615 15 8 7.3070 0.8777 2.4741 16 8 7.6918 0.5459 0.0528 17 6 8.8132 -1.1964 1.7337 18 6 10.1632 -0.4857 1.8502 19 6 11.2376 -1.4959 2.1601 20 1 10.9832 -2.5405 2.2632 21 6 12.5454 -1.0867 2.3119 22 7 12.8552 0.1853 2.1869 23 14 13.8775 -2.3390 2.6953 24 1 14.0126 -2.4831 4.1671 25 1 13.5105 -3.6495 2.1012 26 1 15.1683 -1.8799 2.1224 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6055 -1.7198 1.2951 35 1 1.7517 -0.1584 2.1370 36 1 3.9994 0.1675 1.1421 37 1 3.8532 -1.3939 0.3002 38 1 2.7381 -3.1674 3.0292 39 1 3.4366 -3.3538 1.3912 40 1 4.8193 -3.7399 4.1042 41 1 4.8242 -4.8388 2.6874 42 1 6.2496 -3.3683 1.4150 43 1 6.9241 -3.1879 3.0650 44 1 5.6553 -0.9422 0.4191 45 1 8.8595 -1.9344 0.9329 46 1 8.5827 -1.6956 2.6749 47 1 10.1173 0.2524 2.6509 48 1 10.3936 0.0132 0.9089 49 1 12.1636 0.8355 1.9875 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171766547.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:47 Heat of formation + Delta-G solvation = -123.501391 kcal Electronic energy + Delta-G solvation = -25765.637561 eV Core-core repulsion = 22238.806370 eV Total energy + Delta-G solvation = -3526.831191 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.52320 -36.80532 -36.57847 -35.50988 -34.25342 -33.46260 -31.97321 -31.00141 -27.57513 -27.27234 -27.07670 -25.05775 -23.38498 -22.00062 -20.91952 -20.28183 -19.76229 -18.84884 -17.69852 -16.76805 -16.29427 -15.75075 -15.62097 -15.46662 -15.10336 -14.49866 -14.31268 -14.07191 -13.79686 -13.54896 -13.30173 -12.99561 -12.85220 -12.63783 -12.52380 -12.39200 -12.09621 -11.73309 -11.67430 -11.64340 -11.54799 -11.34308 -11.21418 -11.15581 -11.01251 -10.91862 -10.84323 -10.77278 -10.52035 -10.47919 -10.44775 -10.38843 -10.29177 -10.09575 -9.34667 -8.65065 -8.45564 -6.47351 -4.19998 0.73797 3.08929 3.38179 3.41827 3.57583 4.17429 4.27405 4.39244 4.43853 4.47199 4.64673 4.66492 4.72463 4.80306 5.04370 5.17322 5.18896 5.22559 5.28505 5.32919 5.36249 5.39880 5.44716 5.49004 5.54432 5.55363 5.58043 5.59518 5.63660 5.69337 5.75685 5.76798 5.85321 5.91061 5.93913 5.98953 6.07276 6.14775 6.22077 6.24620 6.33280 6.35892 6.97593 7.05170 7.12157 7.97049 8.30578 8.73193 9.52418 10.92593 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021307 B = 0.003109 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.782660 B = 9004.853438 C = 9989.750271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.099 4.099 3 C -0.152 4.152 4 C -0.113 4.113 5 C -0.117 4.117 6 C -0.093 4.093 7 H 0.080 0.920 8 C -0.118 4.118 9 C -0.123 4.123 10 C -0.149 4.149 11 C 0.147 3.853 12 H 0.095 0.905 13 N -1.119 6.119 14 S 2.588 3.412 15 O -0.967 6.967 16 O -0.970 6.970 17 C -0.583 4.583 18 C 0.015 3.985 19 C -0.599 4.599 20 H 0.055 0.945 21 C 0.015 3.985 22 N -0.907 5.907 23 Si 1.076 2.924 24 H -0.286 1.286 25 H -0.288 1.288 26 H -0.282 1.282 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.413 0.587 45 H 0.121 0.879 46 H 0.120 0.880 47 H 0.024 0.976 48 H 0.023 0.977 49 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.156 -6.352 -1.221 25.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 C -0.210 4.210 4 C -0.151 4.151 5 C -0.155 4.155 6 C -0.113 4.113 7 H 0.099 0.901 8 C -0.155 4.155 9 C -0.161 4.161 10 C -0.189 4.189 11 C 0.039 3.961 12 H 0.113 0.887 13 N -0.877 5.877 14 S 2.686 3.314 15 O -0.957 6.957 16 O -0.960 6.960 17 C -0.716 4.716 18 C -0.024 4.024 19 C -0.638 4.638 20 H 0.074 0.926 21 C -0.189 4.189 22 N -0.542 5.542 23 Si 0.903 3.097 24 H -0.213 1.213 25 H -0.214 1.214 26 H -0.208 1.208 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.096 0.904 43 H 0.093 0.907 44 H 0.249 0.751 45 H 0.140 0.860 46 H 0.138 0.862 47 H 0.042 0.958 48 H 0.042 0.958 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -22.419 -5.513 -0.905 23.105 hybrid contribution -1.684 -0.567 -0.526 1.854 sum -24.104 -6.080 -1.431 24.900 Atomic orbital electron populations 1.21838 0.95494 1.01454 1.01615 1.21143 0.95443 0.96587 0.98580 1.21923 1.01628 0.95844 1.01565 1.21673 0.95463 1.00294 0.97670 1.21736 0.95213 1.01260 0.97252 1.21988 0.93781 0.96290 0.99264 0.90125 1.22454 0.97821 0.94146 1.01121 1.22439 0.94399 0.98892 1.00380 1.23035 0.98657 0.94755 1.02406 1.21489 0.94517 0.92313 0.87747 0.88671 1.55975 1.43609 1.69999 1.18141 1.05618 0.75126 0.76379 0.74325 1.93544 1.84254 1.63203 1.54734 1.93554 1.85729 1.77622 1.39096 1.30373 1.14697 1.15830 1.10706 1.19065 0.89107 0.96666 0.97586 1.21861 0.93522 0.94420 1.54013 0.92650 1.25968 0.99156 0.99728 0.94082 1.70752 1.37483 1.01692 1.44254 0.83450 0.75461 0.74083 0.76693 1.21261 1.21389 1.20775 0.92804 0.92894 0.92889 0.91313 0.92138 0.92932 0.92742 0.91962 0.92004 0.90841 0.91807 0.91680 0.91397 0.91269 0.91402 0.90416 0.90662 0.75098 0.86012 0.86178 0.95830 0.95843 0.91893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.19 37.16 0.34 -0.66 16 2 C -0.10 -0.77 2.92 -90.62 -0.26 -1.03 16 3 C -0.15 -1.31 8.95 37.16 0.33 -0.97 16 4 C -0.11 -0.87 4.54 -26.73 -0.12 -1.00 16 5 C -0.12 -1.04 3.03 -26.73 -0.08 -1.12 16 6 C -0.09 -0.85 2.93 -89.50 -0.26 -1.11 16 7 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 8 C -0.12 -0.90 5.53 -25.07 -0.14 -1.03 16 9 C -0.12 -1.00 6.91 -24.73 -0.17 -1.17 16 10 C -0.15 -1.50 6.46 -25.07 -0.16 -1.66 16 11 C 0.15 1.65 3.45 -66.81 -0.23 1.42 16 12 H 0.10 1.15 7.52 -51.93 -0.39 0.76 16 13 N -1.12 -14.24 4.46 -3.94 -0.02 -14.26 16 14 S 2.59 46.02 5.44 -107.50 -0.58 45.44 16 15 O -0.97 -19.95 17.42 -57.54 -1.00 -20.95 16 16 O -0.97 -20.08 18.08 -57.54 -1.04 -21.12 16 17 C -0.58 -11.19 6.00 37.16 0.22 -10.97 16 18 C 0.01 0.38 4.29 -27.88 -0.12 0.26 16 19 C -0.60 -16.78 9.11 -34.44 -0.31 -17.10 16 20 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 21 C 0.02 0.44 5.46 -17.82 -0.10 0.35 16 22 N -0.91 -27.84 13.65 55.43 0.76 -27.08 16 23 Si 1.08 24.95 29.90 -169.99 -5.08 19.86 16 24 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.58 6.56 -51.93 -0.34 0.23 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.44 7.51 -51.93 -0.39 0.05 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.77 5.95 -51.93 -0.31 0.46 16 37 H 0.06 0.53 7.04 -51.93 -0.37 0.17 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.50 7.76 -51.93 -0.40 0.10 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.77 8.05 -51.93 -0.42 0.35 16 43 H 0.07 0.79 7.64 -51.93 -0.40 0.39 16 44 H 0.41 4.53 6.49 -34.46 -0.22 4.30 16 45 H 0.12 2.13 8.14 -51.92 -0.42 1.71 16 46 H 0.12 2.07 7.58 -51.92 -0.39 1.68 16 47 H 0.02 0.63 8.01 -51.93 -0.42 0.21 16 48 H 0.02 0.62 8.01 -51.93 -0.42 0.21 16 49 H 0.27 8.30 7.22 -40.82 -0.29 8.00 16 LS Contribution 389.80 15.07 5.87 5.87 Total: -1.00 -34.59 389.80 -11.19 -45.79 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -9.03 Total: 2.25 kcal Atomic # 6 Polarization: -34.74 SS G_CDS: -1.06 Total: -35.80 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: 0.74 Total: -41.34 kcal Atomic # 8 Polarization: -40.03 SS G_CDS: -2.04 Total: -42.07 kcal Atomic # 14 Polarization: 24.95 SS G_CDS: -5.08 Total: 19.86 kcal Atomic # 16 Polarization: 46.02 SS G_CDS: -0.58 Total: 45.44 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.59 -11.19 -45.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171766547.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.715 kcal (2) G-P(sol) polarization free energy of solvation -34.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds