Wall clock time and date at job start Tue Mar 31 2020 13:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.47177 * 2 1 4 4 C 1.52995 * 109.47265 * 119.99781 * 2 1 3 5 5 C 1.53003 * 109.47179 * 174.99992 * 4 2 1 6 6 C 1.53000 * 109.47057 * 180.02562 * 5 4 2 7 7 H 1.08994 * 110.01879 * 306.39064 * 6 5 4 8 8 C 1.54270 * 110.03293 * 67.83448 * 6 5 4 9 9 C 1.54892 * 104.19553 * 142.89284 * 8 6 5 10 10 C 1.54893 * 102.75021 * 322.06135 * 9 8 6 11 11 C 1.53879 * 110.03209 * 184.99947 * 6 5 4 12 12 H 1.09003 * 110.02945 * 121.37917 * 11 6 5 13 13 N 1.46499 * 110.03313 * 0.02562 * 11 6 5 14 14 S 1.65594 * 120.00303 * 144.99838 * 13 11 6 15 15 O 1.42102 * 104.27534 * 308.92610 * 14 13 11 16 16 O 1.42108 * 104.27870 * 181.07054 * 14 13 11 17 17 C 1.81391 * 104.45143 * 64.99767 * 14 13 11 18 18 C 1.53004 * 109.47414 * 179.97438 * 17 14 13 19 19 C 1.50700 * 109.47208 * 179.97438 * 18 17 14 20 20 H 1.08002 * 119.99770 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00083 * 180.02562 * 19 18 17 22 22 N 1.31514 * 120.00147 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00278 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46986 * 270.00126 * 23 21 19 25 25 H 1.48496 * 109.47029 * 30.00143 * 23 21 19 26 26 H 1.48499 * 109.47352 * 149.99973 * 23 21 19 27 27 H 1.09000 * 109.47068 * 299.99776 * 1 2 3 28 28 H 1.08997 * 109.47057 * 59.99941 * 1 2 3 29 29 H 1.09005 * 109.46694 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47556 * 240.00074 * 2 1 3 31 31 H 1.08998 * 109.47132 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.46997 * 300.00404 * 3 2 1 33 33 H 1.09003 * 109.46818 * 59.99622 * 3 2 1 34 34 H 1.09003 * 109.46912 * 55.00791 * 4 2 1 35 35 H 1.08994 * 109.47919 * 295.00298 * 4 2 1 36 36 H 1.08995 * 109.47144 * 60.00732 * 5 4 2 37 37 H 1.09000 * 109.47291 * 300.00281 * 5 4 2 38 38 H 1.08993 * 110.48692 * 261.57249 * 8 6 5 39 39 H 1.08997 * 110.48277 * 24.08798 * 8 6 5 40 40 H 1.08998 * 110.75404 * 80.37210 * 9 8 6 41 41 H 1.08994 * 110.75665 * 203.55643 * 9 8 6 42 42 H 1.09001 * 110.48066 * 279.26377 * 10 9 8 43 43 H 1.09000 * 110.48587 * 156.62129 * 10 9 8 44 44 H 0.97006 * 119.99926 * 324.99541 * 13 11 6 45 45 H 1.09000 * 109.47478 * 59.99882 * 17 14 13 46 46 H 1.08998 * 109.47401 * 300.00003 * 17 14 13 47 47 H 1.08994 * 109.47074 * 60.00211 * 18 17 14 48 48 H 1.08998 * 109.47285 * 300.00046 * 18 17 14 49 49 H 0.97005 * 119.99661 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.8310 1.1879 6 6 4.0748 -1.5527 2.4369 7 1 3.6962 -1.0608 3.3328 8 6 3.6271 -3.0288 2.4140 9 6 4.8283 -3.7995 3.0159 10 6 6.0471 -3.0406 2.4347 11 6 5.6135 -1.5603 2.4500 12 1 5.9816 -1.0719 3.3523 13 7 6.1289 -0.8736 1.2629 14 16 7.5197 0.0196 1.3615 15 8 7.3070 0.8777 2.4741 16 8 7.6918 0.5459 0.0528 17 6 8.8132 -1.1964 1.7337 18 6 10.1632 -0.4857 1.8502 19 6 11.2376 -1.4959 2.1601 20 1 10.9832 -2.5405 2.2632 21 6 12.5454 -1.0867 2.3119 22 7 12.8552 0.1853 2.1869 23 14 13.8775 -2.3390 2.6953 24 1 14.0126 -2.4831 4.1671 25 1 13.5105 -3.6495 2.1012 26 1 15.1683 -1.8799 2.1224 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6055 -1.7198 1.2951 35 1 1.7517 -0.1584 2.1370 36 1 3.9994 0.1675 1.1421 37 1 3.8532 -1.3939 0.3002 38 1 2.7381 -3.1674 3.0292 39 1 3.4366 -3.3538 1.3912 40 1 4.8193 -3.7399 4.1042 41 1 4.8242 -4.8388 2.6874 42 1 6.2496 -3.3683 1.4150 43 1 6.9241 -3.1879 3.0650 44 1 5.6553 -0.9422 0.4191 45 1 8.8595 -1.9344 0.9329 46 1 8.5827 -1.6956 2.6749 47 1 10.1173 0.2524 2.6509 48 1 10.3936 0.0132 0.9089 49 1 12.1636 0.8355 1.9875 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171766547.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:46 Heat of formation + Delta-G solvation = -145.434889 kcal Electronic energy + Delta-G solvation = -25766.588669 eV Core-core repulsion = 22238.806370 eV Total energy + Delta-G solvation = -3527.782299 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.31002 -38.24104 -37.39509 -37.11391 -36.31425 -34.44864 -33.05250 -32.58437 -28.24166 -27.98304 -27.84807 -27.09288 -24.14218 -23.90742 -21.64075 -21.03832 -20.69657 -20.01240 -19.37647 -18.51762 -17.50307 -17.27819 -16.46035 -16.38387 -16.16170 -15.67359 -15.35449 -15.14599 -15.13223 -14.86190 -14.73701 -14.12279 -13.98919 -13.69669 -13.57964 -13.39208 -13.23220 -13.21231 -13.04453 -12.87791 -12.58111 -12.45489 -12.33085 -12.28111 -12.13098 -12.01821 -11.96134 -11.89109 -11.79218 -11.60520 -11.45939 -11.40914 -11.12131 -11.08702 -10.81458 -10.63770 -10.31775 -8.76366 -6.50329 -0.76380 1.52092 1.61618 1.76929 1.79144 2.53320 2.70362 3.08345 3.16403 3.50499 3.69922 3.74393 3.84202 3.97755 4.04064 4.08930 4.13587 4.29234 4.36604 4.49332 4.51994 4.55500 4.61151 4.66534 4.77679 4.80847 4.83456 4.88265 4.92130 4.95515 4.99316 5.01940 5.04100 5.09390 5.15940 5.23234 5.23888 5.32217 5.33742 5.41227 5.48710 5.54279 5.56772 5.60034 5.80084 6.06748 6.09811 6.43494 7.32797 8.63351 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021307 B = 0.003109 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.782660 B = 9004.853438 C = 9989.750271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.099 4.099 3 C -0.155 4.155 4 C -0.107 4.107 5 C -0.119 4.119 6 C -0.090 4.090 7 H 0.082 0.918 8 C -0.110 4.110 9 C -0.119 4.119 10 C -0.153 4.153 11 C 0.136 3.864 12 H 0.083 0.917 13 N -1.097 6.097 14 S 2.615 3.385 15 O -0.997 6.997 16 O -1.000 7.000 17 C -0.582 4.582 18 C 0.005 3.995 19 C -0.611 4.611 20 H 0.068 0.932 21 C -0.043 4.043 22 N -0.937 5.937 23 Si 1.125 2.875 24 H -0.270 1.270 25 H -0.262 1.262 26 H -0.284 1.284 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.045 0.955 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.076 0.924 35 H 0.059 0.941 36 H 0.053 0.947 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.068 0.932 44 H 0.425 0.575 45 H 0.142 0.858 46 H 0.140 0.860 47 H 0.002 0.998 48 H 0.001 0.999 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.900 -9.103 -1.022 27.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.118 4.118 3 C -0.212 4.212 4 C -0.145 4.145 5 C -0.157 4.157 6 C -0.110 4.110 7 H 0.100 0.900 8 C -0.148 4.148 9 C -0.157 4.157 10 C -0.192 4.192 11 C 0.029 3.971 12 H 0.101 0.899 13 N -0.860 5.860 14 S 2.711 3.289 15 O -0.987 6.987 16 O -0.990 6.990 17 C -0.714 4.714 18 C -0.034 4.034 19 C -0.650 4.650 20 H 0.086 0.914 21 C -0.240 4.240 22 N -0.574 5.574 23 Si 0.944 3.056 24 H -0.195 1.195 25 H -0.187 1.187 26 H -0.210 1.210 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.098 0.902 42 H 0.101 0.899 43 H 0.087 0.913 44 H 0.264 0.736 45 H 0.160 0.840 46 H 0.158 0.842 47 H 0.020 0.980 48 H 0.020 0.980 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -24.185 -8.270 -0.712 25.570 hybrid contribution -1.240 0.314 -0.592 1.410 sum -25.425 -7.956 -1.304 26.673 Atomic orbital electron populations 1.21813 0.94581 1.02053 1.01717 1.21151 0.96193 0.95770 0.98668 1.21944 1.00718 0.96838 1.01691 1.21621 0.94382 1.01001 0.97480 1.21742 0.96197 1.00253 0.97506 1.21990 0.91820 0.97773 0.99414 0.89955 1.22427 0.98072 0.92393 1.01886 1.22441 0.93411 0.99279 1.00593 1.23063 0.99470 0.93857 1.02804 1.21787 0.96236 0.92851 0.86259 0.89872 1.55499 1.41385 1.69604 1.19547 1.04534 0.75464 0.75965 0.72907 1.93505 1.84854 1.64492 1.55840 1.93504 1.86552 1.78565 1.40417 1.30303 1.11979 1.16345 1.12734 1.18982 0.92412 0.96408 0.95612 1.22337 0.94294 0.95453 1.52890 0.91388 1.27661 1.02484 1.00596 0.93280 1.70896 1.37040 1.02674 1.46757 0.82859 0.72479 0.72632 0.77591 1.19508 1.18655 1.20958 0.92797 0.92756 0.92021 0.91257 0.93550 0.92621 0.92854 0.90556 0.92257 0.92786 0.91098 0.90183 0.90655 0.90917 0.90231 0.89949 0.91280 0.73622 0.84021 0.84153 0.97975 0.98031 0.93610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.19 71.98 0.66 -1.02 16 2 C -0.10 -1.38 2.92 -10.79 -0.03 -1.41 16 3 C -0.15 -2.57 8.95 71.98 0.64 -1.93 16 4 C -0.11 -1.43 4.54 30.59 0.14 -1.29 16 5 C -0.12 -1.92 3.03 30.60 0.09 -1.83 16 6 C -0.09 -1.44 2.93 -10.07 -0.03 -1.47 16 7 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 8 C -0.11 -1.31 5.53 31.67 0.18 -1.13 16 9 C -0.12 -1.58 6.91 31.89 0.22 -1.36 16 10 C -0.15 -2.72 6.46 31.67 0.20 -2.52 16 11 C 0.14 2.84 3.45 45.72 0.16 3.00 16 12 H 0.08 1.96 7.52 -2.39 -0.02 1.95 16 13 N -1.10 -26.94 4.46 -166.37 -0.74 -27.69 16 14 S 2.61 93.88 5.44 -56.49 -0.31 93.57 16 15 O -1.00 -42.03 17.42 -127.65 -2.22 -44.25 16 16 O -1.00 -42.08 18.08 -127.65 -2.31 -44.39 16 17 C -0.58 -22.21 6.00 71.98 0.43 -21.78 16 18 C 0.00 0.24 4.29 29.85 0.13 0.37 16 19 C -0.61 -34.36 9.11 25.60 0.23 -34.13 16 20 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 21 C -0.04 -2.48 5.46 84.65 0.46 -2.02 16 22 N -0.94 -59.11 13.65 21.45 0.29 -58.81 16 23 Si 1.12 49.41 29.90 68.60 2.05 51.46 16 24 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 25 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 26 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 27 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 30 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.05 0.89 6.56 -2.39 -0.02 0.87 16 32 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.08 0.83 7.51 -2.39 -0.02 0.81 16 35 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.05 1.09 5.95 -2.39 -0.01 1.08 16 37 H 0.07 1.03 7.04 -2.39 -0.02 1.02 16 38 H 0.08 0.76 8.14 -2.39 -0.02 0.75 16 39 H 0.07 0.82 7.76 -2.39 -0.02 0.80 16 40 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.08 1.40 8.05 -2.39 -0.02 1.38 16 43 H 0.07 1.32 7.64 -2.39 -0.02 1.30 16 44 H 0.42 8.76 6.49 -96.74 -0.63 8.14 16 45 H 0.14 4.79 8.14 -2.39 -0.02 4.77 16 46 H 0.14 4.72 7.58 -2.39 -0.02 4.71 16 47 H 0.00 0.11 8.01 -2.39 -0.02 0.09 16 48 H 0.00 0.08 8.01 -2.39 -0.02 0.06 16 49 H 0.25 16.39 7.22 -92.70 -0.67 15.72 16 Total: -1.00 -75.71 389.80 0.63 -75.08 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: 0.37 Total: 23.56 kcal Atomic # 6 Polarization: -72.02 SS G_CDS: 3.49 Total: -68.53 kcal Atomic # 7 Polarization: -86.05 SS G_CDS: -0.45 Total: -86.50 kcal Atomic # 8 Polarization: -84.11 SS G_CDS: -4.53 Total: -88.64 kcal Atomic # 14 Polarization: 49.41 SS G_CDS: 2.05 Total: 51.46 kcal Atomic # 16 Polarization: 93.88 SS G_CDS: -0.31 Total: 93.57 kcal Total: -75.71 0.63 -75.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171766547.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.351 kcal (2) G-P(sol) polarization free energy of solvation -75.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds